FASTQExperiment Detail
| Title | Pyrosequencing study of 16S ribosomal DNA isolated from fermented food "narezushi" |
| Design Description | none provided |
| Organism | food metagenome |
Library Description
| Name | Time course analysis of bacterial flora during narezushi fermentation |
| Strategy | OTHER |
| Source | OTHER |
| Selection | PCR |
| Layout | SINGLE |
| Construction Protocol | The 16S ribosomal DNA V1-V2 regions were amplified by PCR, and the fragments were analyzed by pyrosequencing. |
Platform
| Platform | LS454 |
| Instrument Model | 454 GS FLX Titanium |
Processing
| PipeSection | |
|---|---|
| Step Index | 1 |
| Prev Step Index | NIL |
| Program | 454BaseCaller 2.3 |
| Version | |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 0 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Technical Read |
| Read Type | Primer |
| Base Coord | 0 |
| Read Index 1 | |
| Read Label | |
| Read Class | Application Read |
| Read Type | Reverse |
| Base Coord | 0 |
