Experiment Detail
| Title | NextSeq 500 paired end sequencing; Gynandropsis gynandra de-etiolation experiment |
| Design Description | Gynandropsis gynandra de-etiolation experiment |
| Organism | Gynandropsis gynandra |
Library Description
| Name | JMH-Gg-Dark-R1-Rep3 |
| Strategy | RNA-Seq |
| Source | TRANSCRIPTOMIC |
| Selection | unspecified |
| Layout | PAIRED |
| Orientation | |
| Nominal Length | 199 |
| Nominal Sdev | 66.03 |
| Construction Protocol | QIAGEN RNeasy Plant Mini kit Growth Conditions Treatment Conditions TruSeq RNA v2 |
Platform
| Platform | ILLUMINA |
| Instrument Model | NextSeq 500 |
Processing
| Base Calls | |
|---|---|
| Sequence Space | |
| Base Caller | |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 70 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Application Read |
| Read Type | Forward |
| Base Coord | 1 |
| Read Index 1 | |
| Read Label | |
| Read Class | Application Read |
| Read Type | Reverse |
| Base Coord | 36 |
Navigation
|
Submission | ERA558118 |
 FTP
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|
Study | ERP014030 | ||
|
Sample | ERS1044618 | ||
|
Run | ERR1230129 |
FASTQ
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SRA
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