Experiment Detail
| Title | Illumina HiSeq 2000 paired end sequencing; RNA-Seq analysis in bovine muscle |
| Design Description | RNA-Seq analysis in bovine muscle |
| Organism | Bos taurus |
Library Description
| Name | 1339 |
| Strategy | RNA-Seq |
| Source | TRANSCRIPTOMIC |
| Selection | size fractionation |
| Layout | PAIRED |
| Orientation | |
| Nominal Length | 200 |
| Nominal Sdev | 50 |
| Construction Protocol | muscle biopsies were obtained at the slaughterhouse Qiagen RNAeasy Midi protocol 4 ug of total RNA were used with Illumina TruSeq RNA sample preparation kit to make the paired-end RNA-Seq libraries; size selection of 200+/-25 bp fragments |
Platform
| Platform | ILLUMINA |
| Instrument Model | Illumina HiSeq 2000 |
Processing
| Base Calls | |
|---|---|
| Sequence Space | |
| Base Caller | |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 202 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Application Read |
| Read Type | Forward |
| Base Coord | 1 |
| Read Index 1 | |
| Read Label | |
| Read Class | Application Read |
| Read Type | Reverse |
| Base Coord | 102 |
Navigation
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Submission | ERA606777 |
 FTP
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Study | ERP015142 | ||
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Sample | ERS1119110 | ||
|
Run | ERR1360993 |
FASTQ
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SRA
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