Experiment Detail
| Title | NextSeq 500 paired end sequencing; Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (H3K4m3 ChIP-seq) |
| Design Description | Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (H3K4m3 ChIP-seq) |
| Organism | Arabidopsis thaliana |
Library Description
| Name | Sample 5_p |
| Strategy | ChIP-Seq |
| Source | GENOMIC |
| Selection | ChIP |
| Layout | PAIRED |
| Orientation | |
| Nominal Length | 147 |
| Nominal Sdev | 18.7 |
| Construction Protocol | closed flower buds MNase treatment to chromatins H3K4m3 ChIP, phenol chloroform extraction, gel extraction of mononuclesomal DNAs TruSeq DNA LT Sample Prep Kit protocol (Illumina) |
Platform
| Platform | ILLUMINA |
| Instrument Model | NextSeq 500 |
Processing
| Base Calls | |
|---|---|
| Sequence Space | |
| Base Caller | |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 70 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Application Read |
| Read Type | Forward |
| Base Coord | 1 |
| Read Index 1 | |
| Read Label | |
| Read Class | Application Read |
| Read Type | Reverse |
| Base Coord | 36 |
Navigation
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Submission | ERA691390 |
 FTP
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Study | ERP016888 | ||
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Sample | ERS1298055 | ||
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Run | ERR1590149 |
FASTQ
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SRA
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