Experiment Detail
| Title | NextSeq 500 paired end sequencing; Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (MNase-seq) |
| Design Description | Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (MNase-seq) |
| Organism | Arabidopsis thaliana |
Library Description
| Name | Sample 3_p |
| Strategy | MNase-Seq |
| Source | GENOMIC |
| Selection | MNase |
| Layout | PAIRED |
| Orientation | |
| Nominal Length | 150 |
| Nominal Sdev | 9.97 |
| Construction Protocol | closed flower buds Nuclei isolation, MNase treatment, phenol chloroform extraction, gel extraction of mononucleosomal DNAs TruSeq DNA LT Sample Prep Kit protocol |
Platform
| Platform | ILLUMINA |
| Instrument Model | NextSeq 500 |
Processing
| Base Calls | |
|---|---|
| Sequence Space | |
| Base Caller | |
Spot Information
| Number of Reads per Spots | 0 |
| Spot Length | 200 |
Read Spec
| Read Index 0 | |
|---|---|
| Read Label | |
| Read Class | Application Read |
| Read Type | Forward |
| Base Coord | 1 |
| Read Index 1 | |
| Read Label | |
| Read Class | Application Read |
| Read Type | Reverse |
| Base Coord | 101 |
Navigation
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Submission | ERA691401 |
 FTP
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Study | ERP016890 | ||
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Sample | ERS1298071 | ||
|
Run | ERR1590156 |
FASTQ
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SRA
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