Search Results ( 48 studies )

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#STUDYSUBMISSIONSTUDY_TITLESTUDY_TYPEORGANISM BASESSUBMITTEDCENTER_NAME
1 DRP000031 DRA000031
DRA000158
Wild Rice Genome Whole Genome Sequencing Oryza longistaminata
Oryza rufipogon
Oryza sativa Japonica Group
44.4G 2009-07-17 NIG
2 DRP000427 DRA000419 Wild rice O. rufipogon (8 accessions) whole genome sequence by HiSeq2000 Whole Genome Sequencing Oryza rufipogon 111.7G 2011-07-15 NIG
3 DRP000447 DRA000438 Transcriptome analysis of Oryza rufipogon W1943 using mRNA-seq Transcriptome Sequencing Oryza rufipogon 1.2G 2011-08-23 NIAS
4 DRP000448 DRA000439 Transcriptome analysis of Oryza rufipogon W0106 using mRNA-seq Transcriptome Sequencing Oryza rufipogon 1.2G 2011-08-23 NIAS
5 DRP000453 DRA000444 Comparison of gene expression pattern between the hybrid and its parents Transcriptome Analysis Oryza rufipogon
Oryza sativa Indica Group
Oryza sativa Indica Group x Oryza sativa Japonica Group
Oryza sativa Japonica Group x Oryza sativa Indica Group
59.6G 2011-08-26 NIG
6 DRP003530 DRA005599 Wild rice O. rufipogon variations Other Oryza rufipogon 129.8G 2017-02-01 NIG
7 DRP005897 DRA005885 Genome diversity and allele mining of rice Other Oryza rufipogon
Oryza sativa Indica Group
Oryza sativa Japonica Group
Oryza sativa f. spontanea
771.6G 2017-05-01 NICS_NARO
8 ERP001143 ERA081008 A map of wild rice genome variation Whole Genome Sequencing Oryza barthii
Oryza glaberrima
Oryza longistaminata
Oryza meridionalis
Oryza rufipogon
364.7G NCGR
9 ERP001394 ERA125029 Whole-genome sequencing of O. rufipogon W1943 Whole Genome Sequencing Oryza rufipogon 7.7G NCGR
10 ERP021432 ERA1172917
ERA1172918
ERA1172919
ERA1172920
ERA1172921
ERA1172923
ERA1172926
ERA1172928
ERA1172931
ERA1172932
ERA1172933
ERA1172936
ERA1172940
ERA1179279
ERA1179280
ERA1179282
ERA1179283
ERA1179284
ERA1179285
ERA1179287
ERA1179629
ERA1179972
The collections of rice germplasm are an important source of genetic diversity for modern breeding, but the gene resources remains largely unexplored. Now we report the establishment and in-depth analysis of a pan-genome dataset for the O. sativa-O. rufipogon species complex, by sequencing and de novo assembly of 66 phylogenetically representative accessions. Other Oryza rufipogon
Oryza sativa
2.9T National Center for Gene Research, Chinese Academy of Sciences
11 SRP002084 SRA012190 Single-base resolution DNA methylomes of rice and functional roles of DNA methylation Epigenetics Oryza rufipogon
Oryza sativa Indica Group
Oryza sativa Japonica Group
Oryza sativa f. spontanea
38.7G 2010-03-11 KIZ
12 SRP014149 SRA055709 Oryza rufipogon strain:dongxiang Genome sequencing Whole Genome Sequencing Oryza rufipogon 22.4G 2012-07-08 BioProject
13 SRP014308 SRA055927 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [small RNA] Transcriptome Analysis Oryza rufipogon 3.5G 2012-07-12 GEO
14 SRP014309 SRA055928 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [degradome] Other Oryza rufipogon 650.1M 2012-07-12 GEO
15 SRP031881 SRA106223 Oryza sativa Genome sequencing Other Oryza rufipogon
Oryza sativa Indica Group
Oryza sativa Japonica Group
239.8G BioProject
16 SRP040984 SRA156457 Oryza rufipogon strain:IRGC:106424 Genome sequencing Other Oryza rufipogon 99.8G BioProject
17 SRP041482 SRA160059 Oryza rufipogon Genome sequencing Whole Genome Sequencing Oryza rufipogon 1.6G BioProject
18 SRP042312 SRA167397 Oryza rufipogon cultivar:Griff. Genome sequencing Whole Genome Sequencing Oryza rufipogon 26.6G BioProject
19 SRP047120 SRA184400
SRA823496
Oryza sativa Genome sequencing Other Oryza rufipogon
Oryza sativa
Oryza sativa Indica Group
Oryza sativa Japonica Group
370.2G BioProject
20 SRP058215 SRA250341 Oryza rufipogon Raw sequence reads Other Oryza rufipogon 36.7G BioProject