Search Results ( 26 studies )

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#STUDYSUBMISSIONSTUDY_TITLESTUDY_TYPEORGANISM BASESSUBMITTEDCENTER_NAME
1 DRP004452 DRA005730 Draft genome sequences of Salmonella enterica subsp. enterica serovar Paratyphi A from Nepal Other Salmonella enterica subsp. enterica serovar Paratyphi A 15G 2017-04-13 NIID
2 ERP000014 ERA000083 Salmonella Paratyphi A diversity (test pool) Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A 1.3G SC
3 ERP000281 ERA015982
ERA020600
ERA119040
ERA166506
ERA885687
ERA885688
ERA893207
Salmonella Typhi and Salmonella Paratyphi A Strains Whole Genome Sequencing Campylobacter fetus
Campylobacter sputorum
Escherichia coli
Hafnia alvei
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Typhi
Wolbachia endosymbiont of Drosophila simulans
human gut metagenome
80.1G SC
4 ERP000347 ERA020636
ERA022064
ERA370784
ERA885720
ERA885721
ERA885722
ERA885723
ERA885724
ERA885725
ERA885726
ERA885727
ERA885836
ERA885837
ERA885838
ERA885839
ERA885840
ERA885841
ERA885842
ERA885843
Salmonella Paratyphi A global variation Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A
human gut metagenome
131G SC
5 ERP000348 ERA020637
ERA283994
ERA885728
ERA885729
ERA885730
ERA885731
Salmonella enterica variation Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Arechavaleta
Salmonella enterica subsp. enterica serovar Brandenburg
Salmonella enterica subsp. enterica serovar Carrau
Salmonella enterica subsp. enterica serovar Chester
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Eastbourne
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Goettingen
Salmonella enterica subsp. enterica serovar Itami
Salmonella enterica subsp. enterica serovar Javiana
Salmonella enterica subsp. enterica serovar Johannesburg
Salmonella enterica subsp. enterica serovar Minnesota
Salmonella enterica subsp. enterica serovar Montevideo
Salmonella enterica subsp. enterica serovar Muenster
Salmonella enterica subsp. enterica serovar Naestved
Salmonella enterica subsp. enterica serovar Oranienburg
Salmonella enterica subsp. enterica serovar Panama
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Pullorum
Salmonella enterica subsp. enterica serovar Reading
Salmonella enterica subsp. enterica serovar Sandiego
Salmonella enterica subsp. enterica serovar Urbana
human gut metagenome
29.8G The Wellcome Trust Sanger Institute
6 ERP000414 ERA015322 Salmonella_Typhi_and_Salmonella_Paratyphi_A_Strains_II Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A 82.9G The Wellcome Trust Sanger Institute
7 ERP000612 ERA029316
ERA135582
ERA201067
ERA885809
ERA885810
ERA885811
ERA885812
ERA885813
ERA885814
ERA889036
ERA889351
ERA889730
ERA889731
ERA889732
ERA889733
Genomic_variation_in_a_global_set_of_Salmonella_Paratyphi_A_isolates Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Typhi
human gut metagenome
90.9G SC
8 ERP005585 ERA301202 Sequencing_Salmonella_Paratyphi_A_samples Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A 4.8G SC
9 ERP005928 ERA1098284
ERA1103556
ERA1106625
ERA1116457
ERA1119444
ERA1120512
ERA1123581
ERA1127818
ERA1133795
ERA1138824
ERA1146706
ERA1149161
ERA1154585
ERA1165929
ERA1172104
ERA1179997
ERA1187975
ERA1193295
ERA1209513
ERA1230159
ERA1238334
ERA1245033
ERA1252897
ERA1267446
ERA1269439
ERA1272248
ERA1314259
ERA1332583
ERA1340968
ERA1348695
ERA1350052
ERA1408786
ERA1467170
ERA1485730
ERA1490692
ERA1502191
ERA1510098
ERA1517552
ERA1521369
ERA1526597
ERA1534097
ERA1539392
ERA1748096
ERA1800436
ERA2102798
ERA317479
ERA323265
ERA349384
ERA352179
ERA356875
ERA358084
ERA369205
ERA370035
ERA370892
ERA372375
ERA384459
ERA388435
ERA391800
ERA392766
ERA394909
ERA396055
ERA398061
ERA401040
ERA402071
ERA406006
ERA407429
ERA410947
ERA411695
ERA414337
ERA420035
ERA422319
ERA427384
ERA428793
ERA435002
ERA436824
ERA440004
ERA441519
ERA443121
ERA445443
ERA450059
ERA452562
ERA455415
ERA459643
ERA461270
ERA462814
ERA465247
ERA466459
ERA472339
ERA475244
ERA484782
ERA486630
ERA490832
ERA520661
ERA524506
ERA525887
ERA526659
ERA528927
ERA532391
ERA535257
ERA535838
ERA540674
ERA542367
ERA546307
ERA551699
ERA552098
ERA553589
ERA557791
ERA560726
ERA562148
ERA565051
ERA570425
ERA582788
ERA596673
ERA598441
ERA601841
ERA607527
ERA610037
ERA612411
ERA619194
ERA624588
ERA625460
ERA640046
ERA648767
ERA651416
ERA653335
ERA666322
ERA672288
ERA676170
ERA678388
ERA681828
ERA686816
ERA689257
ERA695319
ERA697652
ERA707453
ERA709434
ERA716401
ERA732791
ERA742458
ERA763746
ERA767150
ERA769182
ERA771509
ERA775503
ERA778271
ERA787520
ERA789720
ERA789953
ERA791926
ERA803094
ERA808777
ERA815606
ERA828195
ERA829918
ERA845654
ERA854069
ERA856274
ERA863103
ERA871183
ERA885395
ERA886780
ERA894252
ERA904256
NCTC_3000 Other Acholeplasma axanthum
Acholeplasma equifetale
Acholeplasma granularum
Acholeplasma hippikon
Acholeplasma laidlawii
Acholeplasma modicum
Acholeplasma oculi
Achromobacter denitrificans
Achromobacter insolitus
Achromobacter marplatensis
Achromobacter piechaudii
Achromobacter ruhlandii
Achromobacter spanius
Achromobacter xylosoxidans
Acidipropionibacterium jensenii
Acidipropionibacterium microaerophilum
Acinetobacter baumannii
Acinetobacter calcoaceticus
Acinetobacter haemolyticus
Acinetobacter johnsonii
Acinetobacter junii
Acinetobacter lwoffii
Actinobacillus capsulatus
Actinobacillus delphinicola
Actinobacillus equuli
Actinobacillus equuli subsp. haemolyticus
Actinobacillus lignieresii
Actinobacillus pleuropneumoniae
Actinobacillus seminis
Actinobacillus suis
Actinobacillus ureae
Actinomadura madurae
Actinomadura pelletieri
Actinomyces bovis
Actinomyces denticolens
Actinomyces howellii
Actinomyces israelii
Actinomyces slackii
Actinomyces viscosus
Aerococcus viridans
Aeromonas caviae
Aeromonas encheleia
Aeromonas hydrophila
Aeromonas salmonicida
Aeromonas sobria
Afipia broomeae
Afipia clevelandensis
Afipia felis
Aggregatibacter actinomycetemcomitans
Aggregatibacter aphrophilus
Aggregatibacter aphrophilus ATCC 33389
Aggregatibacter segnis ATCC 33393
Agrobacterium tumefaciens
Alcaligenes faecalis
Alcaligenes faecalis subsp. faecalis
Alloiococcus otitis
Alloprevotella tannerae
Alysiella crassa
Alysiella filiformis
Aminobacter aminovorans
Anaerobiospirillum succiniciproducens
Anaerobiospirillum thomasii
Anaerococcus octavius
Anaerococcus prevotii
Aquaspirillum serpens
Arcanobacterium haemolyticum
Arcobacter butzleri
Arcobacter cryaerophilus
Arcobacter nitrofigilis
Arcobacter skirrowii
Atlantibacter hermannii
Atopobium fossor
Atopobium vaginae
Avibacterium avium
Avibacterium gallinarum
Avibacterium paragallinarum
Avibacterium volantium
Bacillus badius
Bacillus cereus
Bacillus circulans
Bacillus coagulans
Bacillus firmus
Bacillus freudenreichii
Bacillus lentus
Bacillus licheniformis
Bacillus megaterium
Bacillus mycoides
Bacillus pumilus
Bacillus simplex
Bacillus subtilis
Bacillus subtilis subsp. spizizenii
Bacillus tequilensis
Bacteroides caccae
Bacteroides eggerthii
Bacteroides fragilis
Bacteroides heparinolyticus
Bacteroides ovatus
Bacteroides pyogenes
Bacteroides stercoris
Bacteroides thetaiotaomicron
Bacteroides uniformis
Bacteroides vulgatus
Bartonella doshiae
Bartonella elizabethae
Bartonella grahamii
Bartonella quintana
Bartonella vinsonii
Bartonella washoeensis
Bergeriella denitrificans
Bergeyella zoohelcum
Bibersteinia trehalosi
Bifidobacterium adolescentis
Bifidobacterium bifidum
Bifidobacterium breve
Bifidobacterium dentium
Bifidobacterium longum
Bifidobacterium longum subsp. infantis
Bisgaard Taxon 40
Blautia coccoides
Blautia producta
Bordetella ansorpii
Bordetella avium
Bordetella bronchiseptica
Bordetella hinzii
Bordetella holmesii
Bordetella parapertussis
Bordetella pertussis
Bordetella petrii
Bordetella pseudohinzii
Bordetella trematum
Brachyspira pilosicoli
Brevibacillus brevis
Brevibacillus laterosporus
Brevibacterium casei
Brevibacterium epidermidis
Brevibacterium iodinum
Brevundimonas diminuta
Brevundimonas vancanneytii
Brevundimonas vesicularis
Brucella abortus
Brucella melitensis
Brucella neotomae
Brucella ovis
Brucella suis
Budvicia aquatica
Burkholderia cenocepacia
Burkholderia cepacia
Burkholderia gladioli
Burkholderia mallei
Burkholderia multivorans
Burkholderia oklahomensis
Burkholderia pseudomallei
Burkholderia stabilis
Burkholderia ubonensis
Buttiauxella agrestis
Campylobacter coli
Campylobacter fetus subsp. fetus
Campylobacter fetus subsp. venerealis
Campylobacter gracilis
Campylobacter helveticus
Campylobacter hepaticus
Campylobacter hominis
Campylobacter hyointestinalis
Campylobacter insulaenigrae
Campylobacter jejuni
Campylobacter jejuni subsp. doylei
Campylobacter jejuni subsp. jejuni
Campylobacter lanienae
Campylobacter lari
Campylobacter lari subsp. lari
Campylobacter mucosalis
Campylobacter rectus
Campylobacter sputorum biovar faecalis
Campylobacter sputorum biovar sputorum
Campylobacter sputorum subsp. bubulus
Campylobacter upsaliensis
Campylobacter ureolyticus
Capnocytophaga canimorsus
Capnocytophaga cynodegmi
Capnocytophaga granulosa
Capnocytophaga haemolytica
Capnocytophaga leadbetteri
Capnocytophaga ochracea
Capnocytophaga sp. oral taxon 326
Capnocytophaga sp. oral taxon 412
Capnocytophaga sputigena
Cardiobacterium hominis
Cardiobacterium sp. A
Cardiobacterium valvarum
Carnobacterium divergens
Cedecea davisae
Cedecea lapagei
Cedecea neteri
Cellulomonas biazotea
Cellulomonas fimi
Cellulosimicrobium cellulans
Cellulosimicrobium funkei
Cellulosimicrobium terreum
Chelonobacter oris
Chromobacterium violaceum
Chryseobacterium antarcticum
Chryseobacterium anthropi
Chryseobacterium aquifrigidense
Chryseobacterium balustinum
Chryseobacterium bernardetii
Chryseobacterium bovis
Chryseobacterium carnis
Chryseobacterium gleum
Chryseobacterium haifense
Chryseobacterium indologenes
Chryseobacterium indoltheticum
Chryseobacterium jejuense
Chryseobacterium jeonii
Chryseobacterium lactis
Chryseobacterium nakagawai
Chryseobacterium pallidum
Chryseobacterium shandongense
Chryseobacterium shigense
Chryseobacterium taklimakanense
Citrobacter amalonaticus
Citrobacter braakii
Citrobacter freundii
Citrobacter koseri
Citrobacter youngae
Clostridioides difficile
Clostridium baratii
Clostridium beijerinckii
Clostridium botulinum
Clostridium carnis
Clostridium chauvoei
Clostridium cochlearium
Clostridium fallax
Clostridium novyi
Clostridium paraputrificum
Clostridium perfringens
Clostridium perfringens B
Clostridium perfringens NCTC 8239
Clostridium putrefaciens
Clostridium sardiniense
Clostridium sporogenes
Clostridium tertium
Clostridium tetani
Clostridium tetanomorphum
Clostridium ventriculi
Collinsella aerofaciens
Comamonas kerstersii
Comamonas terrigena
Comamonas testosteroni
Corynebacterium amycolatum
Corynebacterium auriscanis
Corynebacterium bovis
Corynebacterium cervicis
Corynebacterium cystitidis
Corynebacterium diphtheriae
Corynebacterium diphtheriae bv. mitis
Corynebacterium imitans
Corynebacterium jeikeium
Corynebacterium kutscheri
Corynebacterium matruchotii
Corynebacterium minutissimum
Corynebacterium mycetoides
Corynebacterium pilosum
Corynebacterium pseudotuberculosis
Corynebacterium renale
Corynebacterium segmentosum
Corynebacterium striatum
Corynebacterium ulcerans
Corynebacterium urealyticum
Corynebacterium xerosis
Cronobacter sakazakii
Cronobacter universalis NCTC 9529
Cutibacterium acnes
Cutibacterium avidum
Cutibacterium granulosum
Deinococcus radiophilus
Delftia acidovorans
Dermacoccus nishinomiyaensis
Dermatophilus congolensis
Edwardsiella hoshinae
Edwardsiella ictaluri
Edwardsiella tarda
Eggerthella lenta
Eikenella corrodens
Elizabethkingia anophelis
Elizabethkingia meningoseptica
Empedobacter brevis
Empedobacter falsenii
Enterobacter asburiae
Enterobacter cancerogenus
Enterobacter cloacae
Enterobacter hormaechei
Enterocloster clostridioformis
Enterococcus avium
Enterococcus casseliflavus
Enterococcus cecorum
Enterococcus durans
Enterococcus faecalis
Enterococcus faecium
Enterococcus gallinarum
Enterococcus hirae
Enterococcus malodoratus
Enterococcus mundtii
Enterococcus raffinosus
Enterococcus saccharolyticus
Erysipelatoclostridium ramosum
Erysipelothrix rhusiopathiae
Escherichia coli
Escherichia fergusonii
Ewingella americana
Exiguobacterium aurantiacum
Faecalicoccus pleomorphus
Filifactor villosus
Finegoldia magna
Flavobacterium filum
Flavobacterium hibernum
Flavobacterium hydatis
Flavobacterium lindanitolerans
Flavobacterium resistens
Fluoribacter bozemanae
Fluoribacter dumoffii
Fluoribacter gormanii
Francisella tularensis subsp. holarctica
Fusobacterium naviforme
Fusobacterium necrogenes
Fusobacterium necrophorum
Fusobacterium necrophorum subsp. necrophorum
Fusobacterium nucleatum
Fusobacterium nucleatum subsp. polymorphum
Fusobacterium nucleatum subsp. vincentii
Fusobacterium ulcerans
Fusobacterium varium
Gallibacterium anatis
Gardnerella vaginalis
Gemella haemolysans
Gemella morbillorum
Glaesserella parasuis
Gordonia bronchialis
Gordonia rubripertincta
Gordonia terrae
Grimontia hollisae
Haemophilus aegyptius
Haemophilus haemoglobinophilus
Haemophilus haemolyticus
Haemophilus influenzae
Haemophilus influenzae-murium
Haemophilus parahaemolyticus
Haemophilus parahaemolyticus HK385
Haemophilus parainfluenzae
Haemophilus parainfluenzae ATCC 33392
Haemophilus paraphrohaemolyticus
Haemophilus pittmaniae
Haemophilus sputorum
Hafnia alvei
Hathewaya histolytica
Helicobacter acinonychis
Helicobacter canadensis
Helicobacter canis
Helicobacter cholecystus
Helicobacter cinaedi
Helicobacter fennelliae
Helicobacter muridarum
Helicobacter mustelae
Helicobacter pametensis
Helicobacter pullorum
Helicobacter pylori
Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504
Iodobacter fluviatilis
Janthinobacterium lividum
Jonesia denitrificans
Kingella denitrificans
Kingella kingae
Kingella potus
Klebsiella aerogenes
Klebsiella oxytoca
Klebsiella pneumoniae
Klebsiella pneumoniae subsp. ozaenae
Klebsiella pneumoniae subsp. pneumoniae
Klebsiella pneumoniae subsp. rhinoscleromatis
Klebsiella sp.
Kluyvera ascorbata
Kluyvera cryocrescens
Kluyvera intermedia
Kocuria rhizophila
Kocuria rosea
Kocuria varians
Kurthia zopfii
Kytococcus sedentarius
Lacrimispora indolis
Lacrimispora sphenoides
Lacrimispora xylanolytica
Lactobacillus acidophilus
Lactobacillus brevis
Lactobacillus casei
Lactobacillus delbrueckii subsp. bulgaricus
Lactobacillus delbrueckii subsp. lactis
Lactobacillus gasseri
Lactobacillus plantarum
Lactobacillus plantarum subsp. plantarum
Lactobacillus rhamnosus
Lactobacillus sakei subsp. sakei
Lactococcus lactis subsp. lactis
Lautropia mirabilis
Leclercia adecarboxylata
Legionella adelaidensis
Legionella anisa
Legionella beliardensis
Legionella birminghamensis
Legionella brunensis
Legionella busanensis
Legionella cherrii
Legionella cincinnatiensis
Legionella donaldsonii
Legionella dresdenensis
Legionella erythra
Legionella fairfieldensis
Legionella feeleii
Legionella geestiana
Legionella genomosp. 1
Legionella gratiana
Legionella gresilensis
Legionella hackeliae
Legionella israelensis
Legionella jamestowniensis
Legionella jordanis
Legionella lansingensis
Legionella londiniensis
Legionella longbeachae
Legionella maceachernii
Legionella moravica
Legionella nautarum
Legionella oakridgensis
Legionella parisiensis
Legionella pneumophila
Legionella pneumophila subsp. pascullei
Legionella quateirensis
Legionella quinlivanii
Legionella rubrilucens
Legionella sainthelensi
Legionella santicrucis
Legionella shakespearei
Legionella spiritensis
Legionella steigerwaltii
Legionella taurinensis
Legionella wadsworthii
Legionella waltersii
Legionella worsleiensis
Lelliottia amnigena
Leminorella grimontii
Leminorella richardii
Leuconostoc mesenteroides
Listeria booriae
Listeria fleischmannii subsp. coloradonensis
Listeria fleischmannii subsp. fleischmannii
Listeria grayi
Listeria innocua
Listeria ivanovii subsp. ivanovii
Listeria ivanovii subsp. londoniensis
Listeria marthii
Listeria monocytogenes
Listeria newyorkensis
Listeria seeligeri
Listeria welshimeri
Lysinibacillus sphaericus
Mannheimia haemolytica
Megamonas hypermegale
Microbacterium oxydans
Micrococcus luteus
Micrococcus luteus NCTC 2665
Micrococcus lylae
Mobiluncus curtisii
Mobiluncus curtisii subsp. curtisii
Mobiluncus holmesii
Mobiluncus mulieris
Moellerella wisconsensis
Moraxella atlantae
Moraxella boevrei
Moraxella bovis
Moraxella caprae
Moraxella catarrhalis
Moraxella caviae
Moraxella cuniculi
Moraxella equi
Moraxella lacunata
Moraxella nonliquefaciens
Moraxella osloensis
Moraxella ovis
Morganella morganii
Morococcus cerebrosus
Muribacter muris
Mycobacterium barrassiae
Mycobacterium celatum
Mycobacterium gordonae
Mycobacterium marinum
Mycobacterium xenopi
Mycobacteroides abscessus
Mycobacteroides chelonae
Mycolicibacter nonchromogenicus
Mycolicibacter terrae
Mycolicibacterium acapulense
Mycolicibacterium aichiense
Mycolicibacterium aurum
Mycolicibacterium chitae
Mycolicibacterium chubuense
Mycolicibacterium duvalii
Mycolicibacterium flavescens
Mycolicibacterium fortuitum
Mycolicibacterium gadium
Mycolicibacterium gilvum
Mycolicibacterium neoaurum
Mycolicibacterium parafortuitum
Mycolicibacterium peregrinum
Mycolicibacterium phlei
Mycolicibacterium rhodesiae
Mycolicibacterium senegalense
Mycolicibacterium smegmatis
Mycolicibacterium thermoresistibile
Mycolicibacterium tokaiense
Mycolicibacterium vaccae
Mycoplasma alkalescens
Mycoplasma anatis
Mycoplasma arginini
Mycoplasma arthritidis
Mycoplasma bovigenitalium
Mycoplasma bovirhinis
Mycoplasma californicum
Mycoplasma canis
Mycoplasma caviae
Mycoplasma citelli
Mycoplasma cloacale
Mycoplasma columbinasale
Mycoplasma columbinum
Mycoplasma columborale
Mycoplasma conjunctivae
Mycoplasma cricetuli
Mycoplasma cynos
Mycoplasma dispar
Mycoplasma edwardii
Mycoplasma equirhinis
Mycoplasma fermentans
Mycoplasma gallinaceum
Mycoplasma gallinarum
Mycoplasma gallisepticum
Mycoplasma gallopavonis
Mycoplasma gateae
Mycoplasma glycophilum
Mycoplasma hyopneumoniae
Mycoplasma hyorhinis
Mycoplasma iguanae
Mycoplasma iowae
Mycoplasma lipofaciens
Mycoplasma maculosum
Mycoplasma meleagridis
Mycoplasma moatsii
Mycoplasma molare
Mycoplasma neurolyticum
Mycoplasma orale
Mycoplasma ovipneumoniae
Mycoplasma phocirhinis
Mycoplasma pneumoniae
Mycoplasma pulmonis
Mycoplasma putrefaciens
Mycoplasma salivarium
Mycoplasma sualvi
Mycoplasma subdolum
Mycoplasma synoviae
Myroides odoratimimus
Myroides odoratus
Neisseria animalis
Neisseria animaloris
Neisseria canis
Neisseria cinerea
Neisseria dentiae
Neisseria elongata
Neisseria elongata subsp. glycolytica
Neisseria elongata subsp. nitroreducens
Neisseria flavescens
Neisseria gonorrhoeae
Neisseria lactamica
Neisseria meningitidis
Neisseria mucosa
Neisseria pharyngis
Neisseria polysaccharea
Neisseria weaveri
Neisseria zoodegmatis
Nocardia africana
Nocardia asteroides
Nocardia brasiliensis
Nocardia cyriacigeorgica
Nocardia farcinica
Nocardia otitidiscaviarum
Nocardiopsis dassonvillei
Ochrobactrum anthropi
Ochrobactrum intermedium
Odoribacter splanchnicus
Oerskovia turbata
Oligella ureolytica
Oligella urethralis
Paenibacillus alvei
Paenibacillus macerans
Paenibacillus macquariensis
Paenibacillus polymyxa
Paenibacillus thiaminolyticus
Paeniclostridium sordellii
Pandoraea apista
Pandoraea norimbergensis
Pandoraea pnomenusa
Pandoraea pulmonicola
Pandoraea sputorum
Pannonibacter phragmitetus
Pantoea agglomerans
Parabacteroides distasonis
Parabacteroides merdae
Paraclostridium bifermentans
Parascardovia denticolens
Parvimonas micra
Pasteurella bettyae
Pasteurella canis
Pasteurella dagmatis
Pasteurella langaaensis
Pasteurella multocida
Pasteurella multocida subsp. gallicida
Pasteurella multocida subsp. septica
Pasteurella skyensis
Pasteurella stomatis
Pasteurella testudinis
Paucimonas lemoignei
Pediococcus pentosaceus
Peptococcus niger
Peptoniphilus asaccharolyticus
Peptoniphilus harei
Peptoniphilus indolicus
Peptoniphilus ivorii
Peptoniphilus lacrimalis
Peptostreptococcus anaerobius
Phocoenobacter uteri
Photobacterium damselae
Plesiomonas shigelloides
Pluralibacter gergoviae
Porphyromonas cangingivalis
Porphyromonas circumdentaria
Porphyromonas crevioricanis
Porphyromonas endodontalis
Porphyromonas gingivalis
Porphyromonas gulae
Porphyromonas macacae
Pragia fontium
Prevotella bivia
Prevotella buccae
Prevotella buccalis
Prevotella corporis
Prevotella denticola
Prevotella disiens
Prevotella intermedia
Prevotella melaninogenica
Prevotella nigrescens
Prevotella oralis
Prevotella oris
Prevotella oulorum
Prevotella pallens
Propionibacterium acidifaciens
Propionibacterium australiense
Propionibacterium freudenreichii
Propionibacterium freudenreichii subsp. shermanii
Propioniferax innocua
Propionimicrobium lymphophilum
Proteus mirabilis
Proteus penneri
Proteus vulgaris
Providencia alcalifaciens
Providencia heimbachae
Providencia rettgeri
Providencia rustigianii
Providencia stuartii
Pseudescherichia vulneris
Pseudoalteromonas nigrifaciens
Pseudomonas aeruginosa
Pseudomonas alcaligenes
Pseudomonas andersonii
Pseudomonas chlororaphis
Pseudomonas chlororaphis subsp. chlororaphis
Pseudomonas fluorescens
Pseudomonas fragi
Pseudomonas guguanensis
Pseudomonas luteola
Pseudomonas mendocina
Pseudomonas mucidolens
Pseudomonas oleovorans
Pseudomonas putida
Pseudomonas stutzeri
Pseudomonas syncyanea
Pseudomonas synxantha
Pseudomonas taetrolens
Pseudopropionibacterium propionicum
Psychrobacter phenylpyruvicus
Ralstonia mannitolilytica
Ralstonia pickettii
Raoultella ornithinolytica
Raoultella planticola
Raoultella sp. NCTC 9187
Raoultella sp. NCTC 9189
Raoultella terrigena
Rhodococcus coprophilus
Rhodococcus corynebacterioides
Rhodococcus erythropolis
Rhodococcus gordoniae
Rhodococcus hoagii
Rhodococcus rhodochrous
Rhodococcus wratislaviensis
Riemerella anatipestifer
Rikenella microfusus
Rodentibacter pneumotropicus
Romboutsia ilealis
Roseomonas gilardii subsp. rosea
Roseomonas mucosa
Rothia dentocariosa
Rothia kristinae
Salmonella bongori
Salmonella enterica
Salmonella enterica subsp. arizonae
Salmonella enterica subsp. diarizonae
Salmonella enterica subsp. enterica
Salmonella enterica subsp. enterica serovar Aberdeen
Salmonella enterica subsp. enterica serovar Bovismorbificans
Salmonella enterica subsp. enterica serovar Braenderup
Salmonella enterica subsp. enterica serovar Bredeney
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Daytona
Salmonella enterica subsp. enterica serovar Derby
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Give
Salmonella enterica subsp. enterica serovar Goldcoast
Salmonella enterica subsp. enterica serovar Hartford
Salmonella enterica subsp. enterica serovar Havana
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Infantis
Salmonella enterica subsp. enterica serovar Java
Salmonella enterica subsp. enterica serovar Madelia
Salmonella enterica subsp. enterica serovar Montevideo
Salmonella enterica subsp. enterica serovar Oranienburg
Salmonella enterica subsp. enterica serovar Panama
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Poona
Salmonella enterica subsp. enterica serovar Pullorum
Salmonella enterica subsp. enterica serovar Sanjuan
Salmonella enterica subsp. enterica serovar Sendai
Salmonella enterica subsp. enterica serovar Senftenberg
Salmonella enterica subsp. enterica serovar Stanley
Salmonella enterica subsp. enterica serovar Thompson
Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. houtenae
Salmonella enterica subsp. houtenae serovar Houten
Salmonella enterica subsp. indica
Salmonella enterica subsp. salamae
Salmonella enterica subsp. salamae serovar Greenside
Salmonella sp. NCTC 11881
Salmonella sp. NCTC 3046
Salmonella sp. NCTC 6947
Salmonella sp. NCTC 7297
Schaalia odontolytica
Sebaldella termitidis
Serratia ficaria
Serratia fonticola
Serratia grimesii
Serratia liquefaciens
Serratia marcescens
Serratia odorifera
Serratia plymuthica
Serratia proteamaculans
Serratia quinivorans
Serratia rubidaea
Shewanella baltica
Shewanella putrefaciens
Shigella boydii
Shigella dysenteriae
Shigella flexneri
Shigella sonnei
Shimwellia blattae
Shinella zoogloeoides
Slackia exigua
Slackia heliotrinireducens
Sphingobacterium composti Yoo et al. 2007 non Ten et al. 2007
Sphingobacterium daejeonense
Sphingobacterium mizutaii
Sphingobacterium multivorum
Sphingobacterium spiritivorum
Sphingobacterium thalpophilum
Sphingomonas paucimobilis
Sporosarcina pasteurii
Staphylococcus argenteus
Staphylococcus arlettae
Staphylococcus aureus
Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus auricularis
Staphylococcus capitis
Staphylococcus caprae
Staphylococcus carnosus subsp. carnosus
Staphylococcus carnosus subsp. utilis
Staphylococcus chromogenes
Staphylococcus cohnii
Staphylococcus condimenti
Staphylococcus delphini
Staphylococcus devriesei
Staphylococcus epidermidis
Staphylococcus equorum
Staphylococcus fleurettii
Staphylococcus gallinarum
Staphylococcus haemolyticus
Staphylococcus hominis
Staphylococcus hyicus
Staphylococcus intermedius NCTC 11048
Staphylococcus kloosii
Staphylococcus lentus
Staphylococcus lugdunensis
Staphylococcus massiliensis
Staphylococcus microti
Staphylococcus muscae
Staphylococcus nepalensis
Staphylococcus petrasii subsp. jettensis
Staphylococcus petrasii subsp. petrasii
Staphylococcus piscifermentans
Staphylococcus pseudintermedius
Staphylococcus rostri
Staphylococcus saccharolyticus
Staphylococcus saprophyticus
Staphylococcus saprophyticus subsp. saprophyticus
Staphylococcus schleiferi
Staphylococcus schweitzeri
Staphylococcus sciuri subsp. sciuri
Staphylococcus simiae
Staphylococcus simulans
Staphylococcus sp. NCTC 7486
Staphylococcus stepanovicii
Staphylococcus warneri
Staphylococcus xylosus
Stenotrophomonas maltophilia
Streptobacillus moniliformis
Streptococcus acidominimus
Streptococcus agalactiae
Streptococcus anginosus
Streptococcus australis
Streptococcus canis
Streptococcus constellatus
Streptococcus constellatus subsp. pharyngis
Streptococcus criceti
Streptococcus cristatus
Streptococcus cristatus ATCC 51100
Streptococcus downei MFe28
Streptococcus dysgalactiae
Streptococcus dysgalactiae subsp. dysgalactiae
Streptococcus dysgalactiae subsp. equisimilis
Streptococcus equi subsp. equi
Streptococcus equi subsp. zooepidemicus
Streptococcus equinus
Streptococcus ferus
Streptococcus gallolyticus
Streptococcus gallolyticus subsp. gallolyticus
Streptococcus gordonii
Streptococcus hyointestinalis
Streptococcus infantarius
Streptococcus infantis
Streptococcus intermedius
Streptococcus lutetiensis
Streptococcus macacae NCTC 11558
Streptococcus massiliensis
Streptococcus merionis
Streptococcus milleri
Streptococcus mitis
Streptococcus mutans
Streptococcus oralis
Streptococcus oralis ATCC 35037
Streptococcus oralis subsp. tigurinus
Streptococcus parasanguinis
Streptococcus pasteurianus
Streptococcus peroris
Streptococcus pneumoniae
Streptococcus porcinus
Streptococcus pseudoporcinus
Streptococcus pyogenes
Streptococcus salivarius
Streptococcus sanguinis
Streptococcus sobrinus
Streptococcus sp. NCTC 10228
Streptococcus sp. NCTC 10233
Streptococcus sp. NCTC 11567
Streptococcus sp. NCTC 5968
Streptococcus suis
Streptococcus thermophilus
Streptococcus uberis
Streptococcus urinalis
Streptococcus vestibularis
Streptococcus viridans
Streptomyces albus
Streptomyces coelicolor A3(2)
Streptomyces griseus
Streptomyces hominis
Streptomyces horton
Streptomyces somaliensis
Suttonella indologenes
Suttonella ornithocola
Tatlockia micdadei
Tatumella ptyseos
Taylorella equigenitalis
Taylorella equigenitalis ATCC 35865
Tissierella praeacuta
Trueperella bialowiezensis
Trueperella pyogenes
Tsukamurella inchonensis
Tsukamurella paurometabola
Tsukamurella pulmonis
Tsukamurella tyrosinosolvens
Veillonella atypica
Veillonella caviae
Veillonella criceti
Veillonella dispar
Veillonella parvula
Veillonella ratti
Veillonella rodentium
Vibrio alginolyticus
Vibrio anguillarum
Vibrio campbellii
Vibrio cholerae non-O1
Vibrio cincinnatiensis
Vibrio fluvialis
Vibrio furnissii
Vibrio harveyi
Vibrio mediterranei
Vibrio metschnikovii
Vibrio mimicus
Vibrio natriegens
Vibrio parahaemolyticus
Vibrio pelagius
Vibrio vulnificus
Weeksella virosa
Weissella viridescens
Wolinella succinogenes
Yersinia enterocolitica
Yersinia enterocolitica subsp. enterocolitica
Yersinia enterocolitica subsp. palearctica
Yersinia frederiksenii
Yersinia intermedia
Yersinia kristensenii
Yersinia pestis
Yersinia pseudotuberculosis
Yersinia ruckeri
Yokenella regensburgei
[Actinobacillus] rossii
[Clostridium] cocleatum
[Clostridium] symbiosum
[Eubacterium] infirmum
[Eubacterium] minutum
[Flavobacterium] thermophilum
[Haemophilus] ducreyi
[Pasteurella] aerogenes
[Pasteurella] mairii
uncultured Avibacterium sp.
4.5T The Wellcome Trust Sanger Institute
10 ERP010701 ERA446353
ERA446354
ERA446355
ERA446356
ERA446885
ERA446886
ERA446887
ERA446888
ERA446889
ERA446890
ERA446891
ERA446892
ERA446893
ERA446894
ERA446895
ERA446896
ERA446898
ERA523940
We carried out genomic analysis isolated in an outbreak caused by Salmonella Paratyphi A Metagenomics Salmonella enterica subsp. enterica serovar Paratyphi A 8.1G ICDC
11 ERP010764 ERA447680 Microevolution_of_Salmonella_Paratyphi_A_during_human_infection Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A 22.5G The Wellcome Trust Sanger Institute
12 ERP013676 ERA549701
ERA549715
ERA549716
ERA549720
ERA549721
ERA549722
ERA549723
ERA549724
ERA549725
Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015 Other Salmonella enterica subsp. enterica serovar Paratyphi A 44.7G Institut Pasteur, FRANCE
13 ERP013994 ERA557668
ERA557670
ERA557672
ERA557674
ERA557676
ERA557682
ERA787460
ParaA epidemic Cambodia 2014 Other Salmonella enterica subsp. enterica serovar Paratyphi A 45.1G Institut Pasteur, FRANCE
14 ERP015655 ERA1149466
ERA1596292
ERA1666693
ERA1762759
ERA1773727
ERA1852875
ERA2341399
ERA2380422
ERA812896
ERA814651
A_strategic_vision_to_drive_the_control_of_enteric_fever_through_vaccination_ Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
481.4G The Wellcome Trust Sanger Institute
15 ERP020561 ERA775688
ERA786386
EURL reference testing Other Escherichia coli
Salmonella enterica
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Hadar
Salmonella enterica subsp. enterica serovar Havana
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Infantis
Salmonella enterica subsp. enterica serovar Kentucky
Salmonella enterica subsp. enterica serovar Mbandaka
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Virchow
94.7G Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark
16 ERP020979 ERA1086845
ERA1086908
ERA1087119
ERA1087696
ERA1087707
ERA1097411
ERA1097413
ERA1097437
ERA1116646
ERA1131595
ERA1131604
ERA1141755
ERA1152486
ERA1153072
ERA1166040
ERA1209385
ERA1492334
ERA1492335
ERA1509879
ERA1509880
ERA1509881
ERA1509883
ERA1509884
ERA1509887
ERA1518991
ERA1518992
ERA1518993
ERA1518994
ERA1518995
ERA1518996
ERA1519094
ERA1519095
ERA1519205
ERA1519206
ERA1519207
ERA1519208
ERA1519209
ERA1519210
ERA1519211
ERA1519212
ERA1519214
ERA1521372
ERA1521375
ERA1521379
ERA1521381
ERA1521383
ERA1521384
ERA1521385
ERA1521387
ERA1521389
ERA1521390
ERA1560079
ERA1560080
ERA1560082
ERA1560084
ERA1560085
ERA1560086
ERA1560087
ERA1560088
ERA1560090
ERA1560092
ERA1560094
ERA1575696
ERA1575697
ERA1575698
ERA1575699
ERA1575700
ERA1575701
ERA1575702
ERA1575703
ERA1575704
ERA1575705
ERA1575849
ERA1575850
ERA1575851
ERA1575852
ERA1575853
ERA1575854
ERA1575855
ERA1575858
ERA1575859
ERA1575860
ERA1575863
ERA1635329
ERA1635330
ERA1635331
ERA1635332
ERA1635333
ERA1635334
ERA1635335
ERA1635336
ERA1635337
ERA1635338
ERA1635339
ERA1635340
ERA1635341
ERA1635342
ERA1635343
ERA1635344
ERA1635346
ERA1656756
ERA789573
ERA789912
ERA789950
ERA789954
ERA790337
ERA790482
ERA792141
ERA792142
ERA792421
ERA807123
ERA807128
ERA807140
ERA807143
ERA807172
ERA807368
ERA807381
ERA807431
ERA807488
ERA807608
ERA807613
ERA807673
ERA807848
ERA807929
ERA807953
ERA808588
ERA808592
ERA808593
ERA808763
ERA808875
ERA808881
ERA809229
ERA809383
ERA809393
ERA809570
ERA812721
ERA812816
ERA812842
ERA812879
ERA813003
ERA813695
ERA814011
ERA814211
ERA814221
ERA828192
ERA828229
ERA829192
ERA829223
ERA851948
ERA851952
ERA871119
ERA871134
ERA897393
ERA897399
ERA928751
ERA952686
ERA952688
ERA969034
ERA970731
ERA970832
ERA974201
ERA982867
Salmonella WGS from Ireland Other Salmonella enterica subsp. diarizonae
Salmonella enterica subsp. diarizonae serovar 35:i:z35
Salmonella enterica subsp. diarizonae serovar 61:k:1,5,7
Salmonella enterica subsp. enterica
Salmonella enterica subsp. enterica serovar Adjame
Salmonella enterica subsp. enterica serovar Agama
Salmonella enterica subsp. enterica serovar Agbeni
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Altona
Salmonella enterica subsp. enterica serovar Anatum
Salmonella enterica subsp. enterica serovar Apapa
Salmonella enterica subsp. enterica serovar Bareilly
Salmonella enterica subsp. enterica serovar Bonn
Salmonella enterica subsp. enterica serovar Bovismorbificans
Salmonella enterica subsp. enterica serovar Braenderup
Salmonella enterica subsp. enterica serovar Brandenburg
Salmonella enterica subsp. enterica serovar Bredeney
Salmonella enterica subsp. enterica serovar Cerro
Salmonella enterica subsp. enterica serovar Chester
Salmonella enterica subsp. enterica serovar Coeln
Salmonella enterica subsp. enterica serovar Corvallis
Salmonella enterica subsp. enterica serovar Denver
Salmonella enterica subsp. enterica serovar Derby
Salmonella enterica subsp. enterica serovar Diguel
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Durban
Salmonella enterica subsp. enterica serovar Durham
Salmonella enterica subsp. enterica serovar Eastbourne
Salmonella enterica subsp. enterica serovar Emek
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Essen
Salmonella enterica subsp. enterica serovar Give
Salmonella enterica subsp. enterica serovar Hadar
Salmonella enterica subsp. enterica serovar Hato
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Hessarek
Salmonella enterica subsp. enterica serovar Hvittingfoss
Salmonella enterica subsp. enterica serovar Idikan
Salmonella enterica subsp. enterica serovar Infantis
Salmonella enterica subsp. enterica serovar Irumu
Salmonella enterica subsp. enterica serovar Isangi
Salmonella enterica subsp. enterica serovar Java
Salmonella enterica subsp. enterica serovar Javiana
Salmonella enterica subsp. enterica serovar Jerusalem
Salmonella enterica subsp. enterica serovar Kentucky
Salmonella enterica subsp. enterica serovar Kiambu
Salmonella enterica subsp. enterica serovar Kimuenza
Salmonella enterica subsp. enterica serovar Kintambo
Salmonella enterica subsp. enterica serovar Kisangani
Salmonella enterica subsp. enterica serovar Kottbus
Salmonella enterica subsp. enterica serovar Lehrte
Salmonella enterica subsp. enterica serovar Limete
Salmonella enterica subsp. enterica serovar Litchfield
Salmonella enterica subsp. enterica serovar London
Salmonella enterica subsp. enterica serovar Luke
Salmonella enterica subsp. enterica serovar Manhattan
Salmonella enterica subsp. enterica serovar Mbandaka
Salmonella enterica subsp. enterica serovar Mikawasima
Salmonella enterica subsp. enterica serovar Minnesota
Salmonella enterica subsp. enterica serovar Montevideo
Salmonella enterica subsp. enterica serovar Muenchen
Salmonella enterica subsp. enterica serovar Muenster
Salmonella enterica subsp. enterica serovar Napoli
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Nima
Salmonella enterica subsp. enterica serovar Ohio
Salmonella enterica subsp. enterica serovar Oranienburg
Salmonella enterica subsp. enterica serovar Panama
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Poona
Salmonella enterica subsp. enterica serovar Potsdam
Salmonella enterica subsp. enterica serovar Rissen
Salmonella enterica subsp. enterica serovar Ruiru
Salmonella enterica subsp. enterica serovar Saintpaul
Salmonella enterica subsp. enterica serovar Sandiego
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Stanley
Salmonella enterica subsp. enterica serovar Stourbridge
Salmonella enterica subsp. enterica serovar Szentes
Salmonella enterica subsp. enterica serovar Tennessee
Salmonella enterica subsp. enterica serovar Thompson
Salmonella enterica subsp. enterica serovar Tudu
Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-
Salmonella enterica subsp. enterica serovar Umbilo
Salmonella enterica subsp. enterica serovar Virchow
Salmonella enterica subsp. enterica serovar Virginia
Salmonella enterica subsp. enterica serovar Weltevreden
Salmonella enterica subsp. enterica serovar Yaba
Salmonella enterica subsp. houtenae serovar 44:z4,z23:-
332.6G University Hospital Galway
17 ERP021286 ERA1313131
ERA1350078
ERA1659733
ERA1909083
ERA2421111
ERA2512225
ERA2517094
Enteric_bacteria_in_Nairobi Whole Genome Sequencing Astragalus didymocarpus var. dispermus
Astragalus kentrophyta var. implexus
Astragalus palenae var. palenae
Bacillus sp. LMG 19636
Boulaya mittenii
Lentaria patouillardii
Macaca brunnescens
Macaca fascicularis philippinensis
Macaca hecki
Macaca leonina
Macaca maura
Macaca nigrescens
Macaca ochreata
Oxytropis besseyi var. ventosa
Salmonella enterica subsp. enterica
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Infantis
Salmonella enterica subsp. enterica serovar Muenchen
Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Potsdam
Salmonella enterica subsp. enterica serovar Typhi
Salmonella enterica subsp. enterica serovar Typhimurium
Thiomargarita namibiensis
193.1G Wellcome Sanger Institute
18 ERP109468 ERA1526464
ERA1558198
Salmonella Typhi in Bangladesh: exploration of genomic diversity and antimicrobial resistance Other Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Typhi
207.4G Fondation Merieux
19 ERP112783 ERA2422055
ERA2516552
The_Surveillance_for_Enteric_fever_in_Asia_Project__SEAP_ Whole Genome Sequencing Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Typhi
Wellcome Sanger Institute
20 ERP116817 ERA2088138 Emergence and molecular basis of azithromycin resistance in typhoidal Salmonella in Dhaka, Bangladesh Other Salmonella enterica subsp. enterica serovar Paratyphi A
Salmonella enterica subsp. enterica serovar Typhi
28.5G Child Health Research Foundation