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Search Results ( 17 studies )

#	STUDY	SUBMISSION	STUDY_TITLE	STUDY_TYPE	ORGANISM	BASES	SUBMITTED	CENTER_NAME
1	SRP004490	SRA026538 SRA191269	Plant genome sequencing data	Whole Genome Sequencing	Aegilops tauschii Brassica oleracea var. italica Cajanus cajan Lemna gibba Oryza sativa Indica Group Oryza sativa Japonica Group Prunus persica var. persica Solanum pimpinellifolium Theobroma cacao Triticum monococcum Triticum turgidum subsp. durum Vitis rotundifolia	4.9T	2010-11-19	CSHL
2	SRP004925	SRA027322 SRA027323 SRA058777 SRA058778 SRA058779 SRA058780 SRA058781 SRA058782 SRA058783 SRA058784 SRA080040 SRA080065 SRA080386 SRA080387 SRA081721 SRA081722 SRA081733 SRA081734 SRA081735 SRA081736 SRA082615	Theobroma cacao Matina 1-6 genome sequencing project	Other	Theobroma cacao	127.5G	2010-12-16	Indiana University
3	SRP009436	SRA048198	Comparison of Theobroma cacao cultivars: Low coverage WGS approach	Other	Theobroma cacao Theobroma grandiflorum	40.1G	2011-11-23	University of British Columbia
4	SRP018696	SRA066232	Transcript profiling of the biotrophic interaction between Theobroma cacao and the fungal pathogen Moniliophthora perniciosa	Other	Theobroma cacao	96.2G	2013-02-07	BioProject
5	SRP071585	SRA383911	Theobroma cacao Transcriptome or Gene expression	Other	Theobroma cacao	59.6G		BioProject
6	SRP072226	SRA393415	Widespread natural variation of DNA methylation within angiosperms	Other	Beta vulgaris Brachypodium distachyon Brassica rapa Cannabis sativa Citrus clementina Cucumis sativus Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fragaria vesca Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Panicum hallii Panicum virgatum Populus trichocarpa Prunus persica Ricinus communis Setaria viridis Sorghum bicolor Theobroma cacao Vitis vinifera	347.6G		GEO
7	SRP079155	SRA1049119 SRA442822 SRA583719 SRA894359	ARCAD-Comparative population genomics	Other	Capsicum annuum Cenchrus americanus Cenchrus compressus Cenchrus polystachios Coffea canephora Coffea pseudozanguebariae Digitaria exilis Dioscorea abyssinica Dioscorea alata Dioscorea cayenensis subsp. rotundata Dioscorea praehensilis Dioscorea trifida Elaeis guineensis Eremopyrum bonaepartis Herrania nitida Mauritia flexuosa Medicago marina Medicago sativa Musa acuminata Musa acuminata subsp. burmannica Musa acuminata subsp. burmannicoides Musa acuminata subsp. malaccensis Musa acuminata subsp. microcarpa Musa acuminata subsp. siamea Musa acuminata var. zebrina Musa balbisiana Musa banksii Musa beccarii Olea europaea subsp. cuspidata Olea europaea subsp. europaea Olea europaea var. sylvestris Phillyrea angustifolia Phoenix dactylifera Solanum melongena Solanum pimpinellifolium Sorghum bicolor Sorghum brachypodum Taeniatherum caput-medusae Theobroma cacao Theobroma speciosum Tricalysia congesta subsp. congesta Triticum monococcum Triticum monococcum subsp. aegilopoides Vitis riparia Vitis romanetii Vitis vinifera Vitis vinifera subsp. sylvestris [Pennisetum] glaucum subsp. monodii	564.6G		BioProject
8	SRP108018	SRA566466 SRA653233 SRA886689	FDA GenomeTrakrCP: cpDNA for botanical product identification	Other	Allium sativum Aloysia citrodora Althaea officinalis Artemisia annua Banisteriopsis caapi Boswellia sacra Citrus limon Coffea arabica Curcuma longa Digitalis lanata Dioscorea villosa Echinacea angustifolia Echinacea atrorubens Echinacea laevigata Echinacea pallida Echinacea paradoxa Echinacea purpurea Echinacea sanguinea Echinacea speciosa Echinacea tennesseensis Eleutherococcus senticosus Eriobotrya japonica Fragaria virginiana Hydrastis canadensis Illicium anisatum Illicium floridanum Illicium henryi Illicium verum Jasminum sambac Jasminum tortuosum Laurus nobilis Magnolia biondii Magnolia denudata Magnolia officinalis subsp. biloba Mitragyna speciosa Pimenta dioica Piper auritum Piper nigrum Prunus dulcis Scutellaria lateriflora Theobroma cacao	38G		BioProject
9	SRP119502	SRA617723	Small RNA loci annotation in cacao, spinach and carrot	Other	Daucus carota Spinacia oleracea Theobroma cacao	3.6G		GEO
10	SRP136974	SRA680264	Theobroma cacao Raw sequence reads	Whole Genome Sequencing	Theobroma cacao	9.5G		BioProject
11	SRP148703	SRA708763 SRA711837 SRA711868 SRA711882 SRA711950 SRA712399 SRA712570	Theobroma cacao isolate:B \| cultivar:Pound 7 Genome sequencing and assembly	Whole Genome Sequencing	Theobroma cacao	188.2G		BioProject
12	SRP150924	SRA725307	Resistant and susceptible cacao varieties exhibit defense gene polymorphism and different responses to Phytophthora megakarya inoculation	Transcriptome Analysis	Theobroma cacao	143.8G		GEO
13	SRP163257	SRA788427	Theobroma cacao breed:multiple breeds Genome sequencing	Other	Theobroma cacao	1.9T		BioProject
14	SRP167324	SRA788427	Theobroma cacao reduced representation libraries	Other	Theobroma cacao	27G		BioProject
15	SRP217924	SRA936635	Theobroma cacao Disease Resistance : Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops	Other	Theobroma cacao	1.9T		BioProject
16	SRP248100	SRA1035538	Cocoa pod transcriptome analysis	Other	Theobroma cacao			BioProject
17	SRP253670	SRA1058123	Theobroma cacao Raw sequence reads	Other	Theobroma cacao	61.7G		BioProject