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Primary Accession Number

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`AA000001`	`PrimaryAccessionNumber:AA000001` `pa:AA000001`
`AA00000*`	`pa:AA00000*`
`/AA00000[1-3]/`	`pa:/AA00000[1-3]/`
`AA000001 AA000002`	`pa:(AA000001 OR AA000002)`

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Accession Number

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`AA000001`	`AccessionNumber:AA000001` `an:AA000001`
`AA00000*`	`an:AA00000*`
`/AA00000[1-3]/`	`an:/AA00000[1-3]/`
`AA000001 AA000002`	`an:(AA000001 OR AA000002)`

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Sequence Length

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`400`	to	`500`	`SequenceLength:[400 TO 500]` `sl:[400 TO 500]`
	to	`500`	`sl:[* TO 500]`
`100`	to		`sl:[100 TO *]`
`450`	to	`450`	`sl:450`

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Molecular Type

DNA RNA cRNA mRNA rRNA tRNA PRT

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`MolecularType:DNA` `mt:DNA`
`mt:(DNA OR RNA)`

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Molecular Form

circular linear

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`MolecularForm:circular` `mf:circular`
`mf:(circular OR linear)`

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Division

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`Division:BCT` `dv:BCT`
`dv:(BCT OR CON)`

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Date

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`20130101`	to	`20131231`	`Date:[20130101 TO 20131231]` `dt:[20130101 TO 20131231]`
	to	`20131231`	`dt:[* TO 20131231]`
`20130101`	to		`dt:[20130101 TO *]`
`20130401`	to	`20130401`	`dt:20130401`

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Definition

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`"catalase gene"`	`Definition:"catalase gene"` `df:"catalase gene"`
`"Homo sapiens cDNA, clone:ABC123, 3' end, expressed in brain"`	`df:"Homo sapiens cDNA, clone:ABC123, 3' end, expressed in brain"`
`/Homo sapiens cDNA, clone:[A-Z0-9]+, 3' end, expressed in brain/`	`df:/Homo sapiens cDNA, clone:[A-Z0-9]+, 3' end, expressed in brain/`

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Keyword

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`BARCODE`	`Keyword:BARCODE` `kw:BARCODE`
`HTGS_*`	`kw:HTGS_*`
`\(3'-EST\)`	`kw:\(3'-EST\)`
`"(3'-EST)"`	`kw:"(3'-EST)"`
`/[35]\'-EST/`	`kw:/[35]\'-EST/`
`/TPA\:(experimental\|reassembly)/`	`kw:/TPA\:(experimental\|reassembly)/`

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Organism

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`"Homo sapiens"`	`Organism:"Homo sapiens"` `og:"Homo sapiens"`
`"Mus musculus" "Rattus norvegicus"`	`og:("Mus musculus" OR "Rattus norvegicus")`

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Lineage

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`Vertebrata`	`Lineage:Vertebrata` `ln:Vertebrata`
`Vertebrata Insecta`	`ln:(Vertebrata OR Insecta)`

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Reference Authors

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`Mishima`	`ReferenceAuthor:Mishima` `ra:Mishima`
`Mishima Shizuoka`	`ra:(Mishima OR Shizuoka)`

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Reference Title

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`"human liver"`	`ReferenceTitle:"human liver"` `rt:"human liver"`
`"stomach cancer" "gastric cancer"`	`rt:("stomach cancer" OR "gastric cancer")`

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Reference Journal

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`"National Institute of Genetics"`	`ReferenceJournal:"National Institute of Genetics"` `rj:"National Institute of Genetics"`

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Reference PubmedID

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`1234567`	`ReferencePubmedID:1234567` `rp:1111111`
`[2222222 TO 3333333]`	`rp:[2222222 TO 3333333]`
`[* TO 3333333]`	`rp:[* TO 3333333]`
`[2222222 TO *]`	`rp:[2222222 TO *]`
`4444444`	`rp:4444444`
`5555555 6666666`	`rp:(5555555 OR 6666666)`

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Comment

e.g.	Same as Quick Search
`"Human cDNA sequencing project"`	`Comment:"Human cDNA sequencing project"` `cm:"Human cDNA sequencing project"`

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Features

Feature Key	Qualifier Name	Qualifier Value
	`/`	`=""`
more features

e.g.			Same as Quick Search
Feature Key	Qualifier Name	Qualifier Value	Same as Quick Search
		`taxon:9606`	`Feature:"taxon:9606"` `fe:"taxon:9606"`
`source`	`chromosome`	`12`	`FeatureQualifier:("source /chromosome=12" AND "source /clone_lib=lambda gt11 human liver cDNA (GeneTech. No.20)" AND "source /db_xref=taxon:9606" AND "CDS /codon_start=1" AND "CDS /translation=")`
`source`	`clone_lib`	`lambda gt11 human liver cDNA (GeneTech. No.20)`
`source`	`db_xref`	`taxon:9606`
`CDS`	`codon_start`	`1`
`CDS`	`translation`
`source`	`chromosome`	`12`	`fq:("source /chromosome=12" AND "source /clone_lib=lambda gt11 human liver cDNA (GeneTech. No.20)" AND "source /db_xref=taxon:9606" AND "CDS /codon_start=1" AND "CDS /translation=")`
`source`	`clone_lib`	`lambda gt11 human liver cDNA (GeneTech. No.20)`
`source`	`db_xref`	`taxon:9606`
`CDS`	`codon_start`	`1`
`CDS`	`translation`

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All Text

e.g.	Same as Quick Search
`human`	`AllText:human` `at:human`

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Available Fields

Field	Query Formats
Primary Accession Number	Search all wordsPrimaryAccessionNumber:(AB999999 AND AB999998 ...) Search any wordsPrimaryAccessionNumber:(AB999999 OR AB999999 ...) Regexp queryPrimaryAccessionNumber:/regexp/
Accession Number	Search all wordsAccessionNumber:(AB999999 AND AB888888 ...) Search any wordsAccessionNumber:(AB999999 OR AB888888 ...) Regexp queryAccessionNumber:/regexp/
Division	Search any divisionsDivision:(HUM OR PRI ...)
Sequence Length	Search rangingSequenceLength:[450 TO 500]
Molecular Type	Search any molecular typesMolecularType:(mRNA OR DNA ...)
Molecular Form	Search any molecular formsMolecularForm:(circular OR linear)
Date	Search rangingDate:[20090601 TO 20090701]
Definition	Search all wordsDefinition:(partial AND cds ...) Search any wordsDefinition:(partial OR cds ...) Regexp queryDefinition:/regexp/ Search exactly matchDefinition:"partial cds"
Comment	Search all wordsComment:(sequencing AND project ...) Search any wordsComment:(sequencing OR project ...) Regexp queryComment:/regexp/ Search exactly matchComment:"sequencing project"
Keyword	Search all wordsKeyword:(HTC AND HTC_FLI ...) Search any wordsKeyword:(HTC OR HTC_FLI ...) Regexp queryKeyword:/regexp/ Search exactly matchKeyword:"oligo capping"
Organism	Search all wordsOrganism:(Homo AND sapiens ...) Search any wordsOrganism:(Homo OR sapiens ...) Regexp queryOrganism:/regexp/ Search exactly matchOrganism:"Homo sapiens"
Lineage	Search all wordsLineage:(Eukaryota AND Metazoa ...) Search any wordsLineage:(Eukaryota OR Metazoa ...) Regexp queryLineage:/regexp/
Reference Author	Search all wordsReferenceAuthor:(Mishima AND Shizuoka ...) Search any wordsReferenceAuthor:(Mishima OR Shizuoka ...) Regexp queryReferenceAuthor:/regexp/ Search exactly matchReferenceAuthor:"Mishima,H."
Reference Title	Search all wordsReferenceTitle:(expressed AND liver ...) Search any wordsReferenceTitle:(expressed OR liver ...) Regexp queryReferenceTitle:/regexp/ Search exactly matchReferenceTitle:"expressed in human liver"
Reference Journal	Search all wordsReferenceJournal:(30-NOV-2008 AND Hanako ...) Search any wordsReferenceJournal:(30-NOV-2008 OR Hanako ...) Regexp queryReferenceJournal:/regexp/ Search exactly matchReferenceJournal:"Hanako Mishima"
Reference PubmedID	Search all wordsReferencePubmedID:(1111111 AND 1111112 ...) Search any wordsReferencePubmedID:(1111111 OR 1111112 ...) Regexp queryReferencePubmedID:/regexp/ Search rangingReferencePubmedID:[1111110 TO 1111119]
Feature	Search all wordsFeature:(GT200015 AND gt11 ...) Search any wordsFeature:(GT200015 OR gt11 ...) Search exactly matchFeature:"gene=\"GAPD\""
Feature Qualifier	Search one feature-qualifierFeatureQualifier:/source \/clone=GT200015/ Search all feature-qualifiersFeatureQualifier:(/source \/clone=GT200015/ AND /CDS \/gene=GAPD/ ...)
All Text	Search with field_name 'AllText'AllText:any_formats

LOCUS	AB000000 450 bp mRNA linear HUM 01-JUN-2009
DEFINITION	Homo sapiens GAPD mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
ACCESSION	AB999999 AB888888 AB777777
VERSION	AB000000.1
KEYWORDS	HTC; HTC_FLI; oligo capping.
SOURCE	Homo sapiens (human)
ORGANISM	Homo sapiens
	Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
	Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
	Catarrhini; Hominidae; Homo.
REFERENCE	1 (bases 1 to 450)
AUTHORS	Mishima,H. and Shizuoka,T.
TITLE	Direct Submission
JOURNAL	Submitted (30-NOV-2008) Contact:Hanako Mishima National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan
PUBMED	1111111
REFERENCE	2
AUTHORS	Mishima,H., Shizuoka,T. and Fuji,I.
TITLE	Glyceraldehyde-3-phosphate dehydrogenase expressed in human liver
JOURNAL	Unpublished (2009)
COMMENT	Human cDNA sequencing project.
FEATURES		Location/Qualifiers
source		1..450
source		/chromosome="12"
source		/clone="GT200015"
source		/clone_lib="lambda gt11 human liver cDNA (GeneTech. No.20)"
source		/db_xref="taxon:9606"
source		/map="12p13"
source		/mol_type="mRNA"
source		/organism="Homo sapiens"
source		/tissue_type="liver"
CDS		86..>450
CDS		/codon_start=1
CDS		/gene="GAPD"
CDS		/product="glyceraldehyde-3-phosphate dehydrogenase"
CDS		/protein_id="BAA12345.1"
CDS		/transl_table=1
CDS		/translation="MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMT YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPKEIPWGETSAEFVVEYTG VFTDKDKAVAQLKGGAKKV"
BASE COUNT 102 a 119 c 131 g 98 t
ORIGIN
1 cccacgcgtc cggtcgcatc gcacttgtag ctctcgaccc ccgcatctca tccctcctct
61 cgcttagttc agatcgaaat cgcaaatggc gaagattaag atcgggatca atgggttcgg
121 gaggatcggg aggctcgtgg ccagggtggc cctgcagagc gacgacgtcg agctcgtcgc
181 cgtcaacgac cccttcatca ccaccgacta catgacatac atgttcaagt atgacactgt
241 gcacggccag tggaagcatc atgaggttaa ggtgaaggac tccaagaccc ttctcttcgg
301 tgagaaggag gtcaccgtgt tcggctgcag gaaccctaag gagatcccat ggggtgagac
361 tagcgctgag tttgttgtgg agtacactgg tgttttcact gacaaggaca aggccgttgc
421 tcaacttaag ggtggtgcta agaaggtctg
//

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List of Entries

1 - entries / Number of founds: 18517559 FlatFile XML Fasta

	PrimaryAccessionNumber	Definition	SequenceLength	MolecularType	Organism
	U01317	Human beta globin region on chromosome 11.	73308	DNA	Homo sapiens
	X83413	Human betaherpesvirus 6A, variant A DNA, complete virion genome, isolate U1102.	159378	DNA	Human betaherpesvirus 6A
	U13369	Human ribosomal DNA complete repeating unit.	42999	DNA	Homo sapiens
	J00098	Human apolipoprotein A-I and C-III genes, complete cds.	8966	DNA	Homo sapiens
	K03455	Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome.	9719	RNA	Human immunodeficiency virus 1
	M26434	Human hypoxanthine phosphoribosyltransferase (HPRT) gene, complete cds.	56737	DNA	Homo sapiens
	X97051	DNA sequence of the human immunoglobulin D segment locus.	92588	DNA	Homo sapiens
	U21247	Human spumaretrovirus complete genome.	11954	RNA	Human spumaretrovirus
	AF157706	Human herpesvirus 6B strain Z29, complete genome.	162114	DNA	Human betaherpesvirus 6B
	U07000	Human breakpoint cluster region (BCR) gene, complete cds.	152141	DNA	Homo sapiens
	U89349	Human papillomavirus type 18 variant, partial sequence.	5210	DNA	human papillomavirus 18
	U68068	Human estrogen receptor mRNA, alternatively spliced transcript H, partial cds.	355	mRNA	Homo sapiens
	U68067	Human estrogen receptor mRNA, alternatively spliced transcript E, partial cds.	330	mRNA	Homo sapiens
	X00955	Human mRNA for apolipoprotein AII precursor.	467	mRNA	Homo sapiens
	AY446894	Human herpesvirus 5 strain Merlin, complete genome.	235646	DNA	Human betaherpesvirus 5
	GQ221974	Human herpesvirus 5 strain 3157, complete genome.	235154	DNA	Human betaherpesvirus 5
	J02547	Human (synthetic) insulin gene, complete cds.	351	DNA	synthetic construct
	M11486	Human respiratory syncytial virus nonstructural protein (1C), nonstructural protein (1B), major nucleocapsid (N), phosphoprotein (P), protein (M), 1A (1A), G (G), protein (F) and envelope-associated protein (22K) gene, complete cds.	8510	RNA	human respiratory syncytial virus
	L10347	Human pro-alpha1 type II collagen (COL2A1) gene exons 1-54, complete cds.	31001	DNA	Homo sapiens
	GU937742	Human herpesvirus 5 strain Toledo, complete genome.	235404	DNA	Human betaherpesvirus 5
	X02994	Human mRNA for adenosine deaminase (adenosine aminohydrolase, EC 3.5.4.4).	1498	mRNA	Homo sapiens
	L11910	Human retinoblastoma susceptibility gene exons 1-27, complete cds.	180388	DNA	Homo sapiens
	M84472	Human 17-beta-hydroxysteroid dehydrogenase (EDH17B1 and EDH17B2) genes, complete coding regions and flanks.	21764	DNA	Homo sapiens
	DD249693	WO 2005103246-A/2: A transgenic non-human animal cell which is sensitive to human retrovirus and a transgenic non-human animal which is sensitive to human retrovirus.	31	DNA	synthetic construct
	DD249708	WO 2005102039-A/2: A transgenic non-human animal cell which is sensitive to human retrovirus and a transgenic non-human animal which is sensitive to human retrovirus.	31	DNA	synthetic construct
	X02761	Human mRNA for fibronectin (FN precursor).	7680	mRNA	Homo sapiens
	HW247777	JP 2013512672-A/1: BINDING PROTEINS THAT BIND TO HUMAN FGFR1C, HUMAN BETA-KLOTHO AND BOTH HUMAN FGFR1C AND HUMAN BETA-KLOTHO.	630	DNA	Homo sapiens
	HW247783	JP 2013512672-A/7: BINDING PROTEINS THAT BIND TO HUMAN FGFR1C, HUMAN BETA-KLOTHO AND BOTH HUMAN FGFR1C AND HUMAN BETA-KLOTHO.	72	DNA	synthetic construct
	HW247789	JP 2013512672-A/13: BINDING PROTEINS THAT BIND TO HUMAN FGFR1C, HUMAN BETA-KLOTHO AND BOTH HUMAN FGFR1C AND HUMAN BETA-KLOTHO.	72	DNA	synthetic construct
	HW247795	JP 2013512672-A/19: BINDING PROTEINS THAT BIND TO HUMAN FGFR1C, HUMAN BETA-KLOTHO AND BOTH HUMAN FGFR1C AND HUMAN BETA-KLOTHO.	84	DNA	synthetic construct
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