Study: JGAS00000000159

Identifier

AccessionJGAS00000000159

Description

Title3.5KJPNv2, an allele frequency panel of 3,552 Japanese individuals
AbstractIn the Tohoku Medical Megabank Project, we have conducted whole-genome sequencing of nearly 4,000 individuals from a Japanese population, and constructed an allele frequency panel of 3,552 individuals (3.5KJPNv2) after removing genetically related individuals. The 3.5KJPNv2 was constructed by using a standard pipeline including the 1KGP and gnomAD algorithms to reduce technical biases and to allow comparisons to other populations. The 3.5KJPNv2 includes variants in chromosome X and mitochondrial genome as well as autosome. The submitter has changed the access level of this study from controlled-access [Type I] to un-restricted access since 11th, January, 2019. The un-restricted access data “hum0015.v3.3.5kjpnv2.v1” are available at the NBDC site: https://humandbs.biosciencedbc.jp/en/hum0015-v3. This study does not contain any controlled-access dataset.
Study Type 1
Study TypeCohort
Study Type 2
Study TypePopulation

Grant

Grant 1
TitleTohoku Medical Megabank Project (Tohoku University) Special Account of the Great East Japan Earthquake Disaster Recovery
Agencythe Japan Agency for Medical Research and Development (AMED)
Grant ID0
Grant 2
TitleTohoku Medical Megabank Project (Tohoku University) General Accounting
Agencythe Japan Agency for Medical Research and Development (AMED)
Grant ID0
Grant 3
TitleTohoku Medical Megabank Project (Iwate Medical University) Special Account of the Great East Japan Earthquake Disaster Recovery
Agencythe Japan Agency for Medical Research and Development (AMED)
Grant ID0
Grant 4
TitleTohoku Medical Megabank Project (Iwate Medical University) General Accounting
Agencythe Japan Agency for Medical Research and Development (AMED)
Grant ID0

Study Link

Study Link 1
URL Linkhttps://www.amed.go.jp/program/list/04/01/001.html
Study Link 2
URL Linkhttp://iwate-megabank.org/
Study Link 3
URL Linkhttps://www.megabank.tohoku.ac.jp/tommo
Study Link 4
URL LinkThe un-restricted access data of this study “hum0015.v3.3.5kjpnv2.v1” are available at the NBDC site

Study Attribute

NBDC Numberhum0015
Registration date2018-11-29
Submitting organizationTohoku Medical Megabank Organization, Tohoku University
Principal InvestigatorMasayuki Yamamoto
Molecular Data TypeWhole Genome Sequencing
PlatformHiSeq 2500
VendorIllumina
Comment
Primary PhenotypeGeneral individuals
Dataset
Accession Title Dataset type Data objects Policy
JGAD00000000237 3.5KJPNv2, an allele frequency panel of 3,552 Japanese individuals. The un-restricted access data ?hum0015.v3.3.5kjpnv2.v1? are available at the NBDC site https://humandbs.biosciencedbc.jp/en/hum0015-v3. This study does not contain any controlled-access dataset. Genomic variant calling 0 JGAP00000000001