PRJDA47577 none provided SAMD00003482 C2C12 cells transfected mir3139 targeted Chd2_Growth_Input lot2 MNase-Seq GENOMIC MNase Input for ChIP analyses were performed as described in Pasini et al. (2008). MNase digested DNA prepared for sequencing with the Illumina ChIPSeq Sample Prep kit. DNA libraries were quantified using a bioanalyzer (Agilent) and diluted to 5-10 pM. Diluted libraries were used directly for cluster generation and sequencing analysis using the Genome Analyzer IIx (Illumina) following the protocol of the manufacturer. Basecalling and mapping of the 36 bp sequences were done using illumina RTA SCS2.6 allowing up to two mismatches in the first 35 bases of a read against mouse genomes July 2007 release (mm9). 35 0 Application Read Forward 1 Illumina Genome Analyzer II 1 NIL Illumina RTA SCS2.6 PRJDA47577 none provided SAMD00003482 C2C12 cells transfected mir3139 targeted Chd2_Growth_H3.3 lot2 ChIP-Seq GENOMIC ChIP ChIP analyses were performed as described in Pasini et al. (2008). Genes Dev 22, 1345-1355. DNA from ChIP experiments was pooled and prepared for sequencing with the Illumina ChIPSeq Sample Prep kit. DNA libraries were quantified using a bioanalyzer (Agilent) and diluted to 5-10 pM. Diluted libraries were used directly for cluster generation and sequencing analysis using the Genome Analyzer IIx (Illumina) following the protocol of the manufacturer. Basecalling and mapping of the 36 bp sequences were done using illumina RTA SCS2.6 allowing up to two mismatches in the first 35 bases of a read against mouse genomes July 2007 release (mm9). 35 0 Application Read Forward 1 Illumina Genome Analyzer II 1 NIL Illumina RTA SCS2.6