<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX000711" center_name="RIKEN_OSC" alias="DRX000711">
        <TITLE>shortRNA_3'adaptor_tag17 or shortRNA_3'adaptor_tag18 added</TITLE>
        <STUDY_REF accession="DRP000402" refcenter="RIKEN_OSC" refname="DRP000402">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2604</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION>none provided</DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS000697" refcenter="RIKEN_OSC" refname="DRS000697">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00012953</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Y01</LIBRARY_NAME>
                <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>This library was constructed from some small RNA.
We added linker "AATT" on both end and 6bp barcode on 3'end of small RNA.
Then the small RNA tags were ligated to form concatemers.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Adapter</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Linker</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE>
                            <BASECALL>AATT</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>2</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Linker</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE>
                            <BASECALL>CAAA</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>3</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <RELATIVE_ORDER follows_read_index="2"/>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>4</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>BarCode</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE>
                            <BASECALL>TCAGAG</BASECALL>
                            <BASECALL>TCATGG</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX></STEP_INDEX>
                    <PREV_STEP_INDEX></PREV_STEP_INDEX>
                    <PROGRAM>1.1.03.24</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
                <PIPE_SECTION>
                    <STEP_INDEX></STEP_INDEX>
                    <PREV_STEP_INDEX></PREV_STEP_INDEX>
                    <PROGRAM>454 Software Release,1.1.03.24</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
        <EXPERIMENT_ATTRIBUTES>
            <EXPERIMENT_ATTRIBUTE>
                <TAG>read_process</TAG>
                <VALUE>treated_as_all_is_application_forward_read</VALUE>
            </EXPERIMENT_ATTRIBUTE>
        </EXPERIMENT_ATTRIBUTES>
    </EXPERIMENT>
</EXPERIMENT_SET>
