<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT alias="DRX000927" center_name="NIAS" accession="DRX000927">
        <TITLE>Analysis of somaclonal variation on the genome of regenerated rice</TITLE>
        <STUDY_REF refname="DRP000443" refcenter="NIAS" accession="DRP000443">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2407</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION>DNA from an individual of  NE1221 (ttm11) at M4 generation has been sequenced.</DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS000825" refcenter="NIAS" accession="DRS000825">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00010990</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>ttm11.paired</LIBRARY_NAME>
                <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>none provided</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>102</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>52</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX></STEP_INDEX>
                    <PREV_STEP_INDEX></PREV_STEP_INDEX>
                    <PROGRAM>Solexa primary analysis</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
                <PIPE_SECTION>
                    <STEP_INDEX></STEP_INDEX>
                    <PREV_STEP_INDEX></PREV_STEP_INDEX>
                    <PROGRAM>phred</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
