<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX000963" center_name="ISHIKAWA" alias="DRX000963">
        <TITLE>Pyrosequencing study of 16S ribosomal DNA isolated from fermented food "narezushi"</TITLE>
        <STUDY_REF accession="DRP000450" refcenter="ISHIKAWA" refname="DRP000450">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDA72133</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION>none provided</DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS000860" refcenter="ISHIKAWA" refname="DRS000860">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00006050</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Time course analysis of bacterial flora during narezushi fermentation</LIBRARY_NAME>
                <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>OTHER</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The 16S ribosomal DNA V1-V2 regions were amplified by PCR, and the fragments were analyzed by pyrosequencing.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Primer</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE>
                            <BASECALL match_edge="full">CTGCTGCCTCCCGTA</BASECALL>
                            <BASECALL match_edge="full">CTGCTGCCTTCCGTA</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <RELATIVE_ORDER follows_read_index="0"/>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM>454BaseCaller 2.3</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
