<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX000966" center_name="OCHA_AP" alias="DRX000966">
        <TITLE>Effective Gene Collection from the Metatranscriptome of Marine Microorganisms</TITLE>
        <STUDY_REF accession="DRP000452" refcenter="OCHA_AP" refname="DRP000452">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDA71261</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION>none provided</DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS000979" refcenter="OCHA_AP" refname="DRS000979">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00011911</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Metatranscriptome of sea water sample at Hiroshima</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>OTHER</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The normalized and non-normalized cDNA libraries were fragmented into 500-800bp using a GS FLX Titanium Rapid Library Preparation Kit (Roche) according to the manufacturer's
protocol.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Adapter</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>5</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM>454 titanium basecaller</PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
