<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX001968" center_name="KEIO" alias="DRX001968">
        <TITLE>Draft genome sequence of Bacillus subtilis Miyagi-4, an efficient starter strain for natto (fermented soybean) production</TITLE>
        <STUDY_REF accession="DRP000672" refcenter="KEIO" refname="DRP000672">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB496</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS002105" refcenter="KEIO" refname="DRS002105">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00015754</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_SDEV="100.0" NOMINAL_LENGTH="500"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA of B. subtilis Miyagi-4 was isolated from Luria Broth culture according to a routine biochemical isolation procedure. RNase-treated genomic DNA was used for construction of a paired-end library with a Paired End Sample Prep kit (Illumina, San Diego, CA) according to the manufacturer?s instructions. The constructed libraries were sequenced (56 cycles, paired-end runs) using an Illumina genome analyzer IIx.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>112</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_LABEL> </READ_LABEL>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_LABEL> </READ_LABEL>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>56</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION section_name=" ">
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
