<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX016195" center_name="HIROSHIMA" alias="DRX016195">
        <TITLE>RRBS analysis of LSK cells obtained from WT mice</TITLE>
        <STUDY_REF accession="DRP002226" refcenter="HIROSHIMA" refname="DRP002226">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2200</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION>DNA extracted from LSK cells of WT mice were first digestedwith MspI restriction enzyme, followed by the ligation with methylatedadaptors at the both end of DNA fragments.DNA fragments of 150-250bp in length were then subjected to bisulfite conversion and amplified by PCR. Sequence was performed at 36bp single end protocol under illumina platform.</DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS015662" refcenter="HIROSHIMA" refname="DRS015662">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00009248</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Reduced Representation</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>36</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
