<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX016240" center_name="UT-AQUA" alias="DRX016240">
        <TITLE>28S 454 pyrosequencing of zooplankton community</TITLE>
        <STUDY_REF accession="DRP002239" refcenter="UT-AQUA" refname="DRP002239">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2530</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS015704" refcenter="UT-AQUA" refname="DRS015704">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00012472</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>28S D2 region containig both forward and reverse sequences</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_LABEL>barcode_tag</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>BarCode</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="1" default_length="11">
                            <BASECALL match_edge="full" read_group_tag="Tag1">ACACTACTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag2">ACGCGTCTAGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag3">ACGAGTAGACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag4">ACGACACGTAT</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Primer</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="12" default_length="11">
                            <BASECALL match_edge="full">AGACCGATAGCAAACAAGTAC</BASECALL>
                            <BASECALL match_edge="full">GTCCGTGTTTCAAGACGG</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>2</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>23</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS Junior</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
