<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<STUDY_SET>
    <STUDY accession="DRP002308" center_name="IGAKUKEN" alias="DRP002308">
        <IDENTIFIERS>
            <PRIMARY_ID label="BioProject ID">PRJDB2856</PRIMARY_ID>
        </IDENTIFIERS>
        <DESCRIPTOR>
            <STUDY_TITLE>FLAG-TdIF1_ChIP-seq_293T</STUDY_TITLE>
            <STUDY_TYPE existing_study_type="Epigenetics"/>
            <STUDY_ABSTRACT>TdIF1 was originally identified as a protein that directly binds to terminal deoxynucleotidyl transferase, TdT. Recently, through SELEX analysis, we showed that TdIF1 recognizes a specific DNA sequence motif, 5'-TGCATG-3' and up-regulates the expression of RAB20. Other target genes of TdIF1, however, remain to be identified. Here, we conducted ChIP-seq, and determined TdIF1-binding sequences (TdIF1-invivoBM) on the human chromosomes. Gene ontology analysis and RT-qPCR method revealed the enrichment of some candidate targets in the genes involved in regulation of ossification or cellular signaling pathways.</STUDY_ABSTRACT>
            <CENTER_PROJECT_NAME>TdIF1</CENTER_PROJECT_NAME>
            <STUDY_DESCRIPTION>To determine TdIF1-regulated genes, ChIP-seq was conducted with FLAG-TdIF1 overexpressing 293T cells using anti-DYKDDDDK antibody. ChIPed DNA was sequenced by SOLiD4.</STUDY_DESCRIPTION>
        </DESCRIPTOR>
        <STUDY_LINKS>
            <STUDY_LINK>
                <XREF_LINK>
                    <DB>pubmed</DB>
                    <ID>11473582</ID>
                </XREF_LINK>
            </STUDY_LINK>
            <STUDY_LINK>
                <XREF_LINK>
                    <DB>pubmed</DB>
                    <ID>17663723</ID>
                </XREF_LINK>
            </STUDY_LINK>
            <STUDY_LINK>
                <XREF_LINK>
                    <DB>pubmed</DB>
                    <ID>19930467</ID>
                </XREF_LINK>
            </STUDY_LINK>
            <STUDY_LINK>
                <XREF_LINK>
                    <DB>pubmed</DB>
                    <ID>21258344</ID>
                </XREF_LINK>
            </STUDY_LINK>
            <STUDY_LINK>
                <XREF_LINK>
                    <DB>pubmed</DB>
                    <ID>23874396</ID>
                </XREF_LINK>
            </STUDY_LINK>
        </STUDY_LINKS>
    </STUDY>
</STUDY_SET>
