<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX016683" center_name="UT-AQUA" alias="DRX016683">
        <TITLE>28S 454 pyrosequencing of zooplankton community</TITLE>
        <STUDY_REF accession="DRP002309" refcenter="UT-AQUA" refname="DRP002309">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2315</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS016138" refcenter="UT-AQUA" refname="DRS016138">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00009981</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <POOLING_STRATEGY>multiplexed samples</POOLING_STRATEGY>
                <LIBRARY_CONSTRUCTION_PROTOCOL>MID tags (Roche) were added after PCR reactions.Sequence data contain both forward and reverse sequences.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_LABEL>barcode_tag</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>BarCode</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="1" default_length="11">
                            <BASECALL match_edge="full" read_group_tag="Tag1">ACTACGTCTCT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag2">ACTCGCGTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag3">ACACGACGACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag4">ACACGTAGTAT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag5">ACACTACTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag6">ACGACACGTAT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag7">ACTATACGAGT</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_LABEL>forward/reverse primer</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Primer</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="12" default_length="21">
                            <BASECALL match_edge="full" read_group_tag="forward primer">AGACCGATAGCAAACAAGTAC</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>2</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>33</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
    <EXPERIMENT accession="DRX016684" center_name="UT-AQUA" alias="DRX016684">
        <TITLE>28S 454 pyrosequencing of zooplankton community</TITLE>
        <STUDY_REF accession="DRP002309" refcenter="UT-AQUA" refname="DRP002309">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2315</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS016139" refcenter="UT-AQUA" refname="DRS016139">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00009999</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <POOLING_STRATEGY>multiplexed samples</POOLING_STRATEGY>
                <LIBRARY_CONSTRUCTION_PROTOCOL>MID tags (Roche) were added after PCR reactions.Sequence data contain both forward and reverse sequences.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_LABEL>barcode_tag</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>BarCode</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="1" default_length="11">
                            <BASECALL match_edge="full" read_group_tag="Tag1">ACACGACGACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag2">ACACGTAGTAT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag3">ACACTACTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag4">ACGACACGTAT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag5">ACGAGTAGACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag6">ACGCGTCTAGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag7">ACGTACACACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag8">ACGTACTGTGT</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_LABEL>forward/reverse primer</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Primer</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="12" default_length="21">
                            <BASECALL match_edge="full" read_group_tag="forward primer">AGACCGATAGCAAACAAGTAC</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>2</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>33</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
    <EXPERIMENT accession="DRX016685" center_name="UT-AQUA" alias="DRX016685">
        <TITLE>28S 454 pyrosequencing of zooplankton community</TITLE>
        <STUDY_REF accession="DRP002309" refcenter="UT-AQUA" refname="DRP002309">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB2315</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS016140" refcenter="UT-AQUA" refname="DRS016140">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00009991</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <POOLING_STRATEGY>multiplexed samples</POOLING_STRATEGY>
                <LIBRARY_CONSTRUCTION_PROTOCOL>MID tags (Roche) were added after PCR reactions.Sequence data contain both forward and reverse sequences.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_LABEL>barcode_tag</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>BarCode</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="1" default_length="11">
                            <BASECALL match_edge="full" read_group_tag="Tag1">ACGTAGATCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag2">ACTACGTCTCT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag3">ACTATACGAGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag4">ACTCGCGTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag5">ACACGACGACT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag6">ACACGTAGTAT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag7">ACACTACTCGT</BASECALL>
                            <BASECALL match_edge="full" read_group_tag="Tag8">ACGACACGTAT</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_LABEL>forward/reverse primer</READ_LABEL>
                        <READ_CLASS>Technical Read</READ_CLASS>
                        <READ_TYPE>Primer</READ_TYPE>
                        <EXPECTED_BASECALL_TABLE base_coord="12" default_length="21">
                            <BASECALL match_edge="full" read_group_tag="forward primer">AGACCGATAGCAAACAAGTAC</BASECALL>
                        </EXPECTED_BASECALL_TABLE>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>2</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>33</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <LS454>
                <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
            </LS454>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
