<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX016701" center_name="NIBB" alias="DRX016701">
        <TITLE>Burkholeria sp. RPE67 PacBio</TITLE>
        <STUDY_REF accession="DRP002314" refcenter="NIBB" refname="DRP002314">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB1660</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS016171" refcenter="NIBB" refname="DRS016171">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00006288</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>130513_burkholderia_67_pc_10kb</LIBRARY_NAME>
                <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>Extracted DNA was purified by power clean kit (MO Bio) then sheared by g-tube(Covaris) into 10 kb. The library was constructed using DNA Template Prep Kit 2.0 (Pacific Biosciences).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <PACBIO_SMRT>
                <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
            </PACBIO_SMRT>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
    <EXPERIMENT accession="DRX016702" center_name="NIBB" alias="DRX016702">
        <TITLE>Burkholeria sp. RPE67 PacBio</TITLE>
        <STUDY_REF accession="DRP002314" refcenter="NIBB" refname="DRP002314">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB1660</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS016171" refcenter="NIBB" refname="DRS016171">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00006288</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>130920_burkholderia_67_20kb</LIBRARY_NAME>
                <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>Extracted DNA was sheared by g-tube(Covaris) into 20 kb. The library was constructed using DNA Template Prep Kit 2.0 (Pacific Biosciences). Size selection of the library was performed using BluePippin (Sage Science) discatding &lt; 7kb molecules.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <PACBIO_SMRT>
                <INSTRUMENT_MODEL>PacBio RS II</INSTRUMENT_MODEL>
            </PACBIO_SMRT>
        </PLATFORM>
        <PROCESSING>
            <PIPELINE>
                <PIPE_SECTION>
                    <STEP_INDEX>1</STEP_INDEX>
                    <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
                    <PROGRAM></PROGRAM>
                    <VERSION></VERSION>
                </PIPE_SECTION>
            </PIPELINE>
        </PROCESSING>
    </EXPERIMENT>
</EXPERIMENT_SET>
