<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX021274" center_name="OIST" alias="DRX021274">
        <TITLE>Illumina HiSeq 2000 paired end sequencing of SAMD00019672</TITLE>
        <STUDY_REF accession="DRP002843" refcenter="OIST" refname="DRP002843">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB3092</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS022217" refcenter="OIST" refname="DRS022217">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00019672</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>TSS-lib_Mfa_zoox_1st</LIBRARY_NAME>
                <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>CAGE</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="370"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA was treated with 2.5 U of BAP (TaKaRa) at 37 ?C for 1 h and 40 U of TAP (Ambion) at 37 ?C for 1 h. BAP-TAP-treated RNAs were ligated with the RNA oligonucleotide. After DNAse treatment, poly(A)-containing RNA was selected and the first strand cDNA was synthesized with random hexamer primer. The PCR fragments were size-fractionated. </LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>202</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>102</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT accession="DRX021275" center_name="OIST" alias="DRX021275">
        <TITLE>Illumina HiSeq 2000 paired end sequencing of SAMD00019672</TITLE>
        <STUDY_REF accession="DRP002843" refcenter="OIST" refname="DRP002843">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB3092</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS022217" refcenter="OIST" refname="DRS022217">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00019672</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>TSS-lib_Mfa_zoox_2nd</LIBRARY_NAME>
                <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>CAGE</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="370"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA was treated with 2.5 U of BAP (TaKaRa) at 37 ?C for 1 h and 40 U of TAP (Ambion) at 37 ?C for 1 h. BAP-TAP-treated RNAs were ligated with the RNA oligonucleotide. After DNAse treatment, poly(A)-containing RNA was selected and the first strand cDNA was synthesized with random hexamer primer. The PCR fragments were size-fractionated. </LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>202</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>102</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
