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<STUDY_SET>
    <STUDY alias="DRP005120" center_name="HU-RCZC" accession="DRP005120">
        <IDENTIFIERS>
            <PRIMARY_ID label="BioProject ID">PRJDB3378</PRIMARY_ID>
        </IDENTIFIERS>
        <DESCRIPTOR>
            <STUDY_TITLE>A possible strategy to the viral population analysis of tick based on Batch Learning Self-Organizing Maps (BLSOMs)</STUDY_TITLE>
            <STUDY_TYPE existing_study_type="Other"/>
            <STUDY_ABSTRACT>Ticks transmit a wide range of viral, bacterial, and protozoal pathogens, which are often zoonotic. The novel tick-borne viral pathogens have been reported during the past few years. The aim of this study was to investigate a diversity of tick viral populations, which may contain as-yet unidentified viruses, using a combination of high throughput pyrosequencing, BLAST search, and Batch Learning Self-Organizing Map (BLSOM) program, which provided pyrogenetic estimation based on the similarity of oligonucleotide frequencies. DNA/cDNA prepared from virus enriched fractions obtained from Ixodes persulcatus ticks was pyrosequencing. After de novo assembly contigs were classified using BLAST and BLSOM program.</STUDY_ABSTRACT>
            <CENTER_PROJECT_NAME>A possible strategy to the viral population analysis of tick based on Batch Learning Self-Organizing Maps (BLSOMs)</CENTER_PROJECT_NAME>
            <RELATED_STUDIES>
                <RELATED_STUDY>
                    <RELATED_LINK>
                        <DB>bioproject</DB>
                        <ID>PRJDB3378</ID>
                        <LABEL>PRJDB3378</LABEL>
                    </RELATED_LINK>
                    <IS_PRIMARY>true</IS_PRIMARY>
                </RELATED_STUDY>
            </RELATED_STUDIES>
            <STUDY_DESCRIPTION>Ticks transmit a wide range of viral, bacterial, and protozoal pathogens, which are often zoonotic. The novel tick-borne viral pathogens have been reported during the past few years. The aim of this study was to investigate a diversity of tick viral populations, which may contain as-yet unidentified viruses, using a combination of high throughput pyrosequencing, BLAST search, and Batch Learning Self-Organizing Map (BLSOM) program, which provided pyrogenetic estimation based on the similarity of oligonucleotide frequencies. DNA/cDNA prepared from virus enriched fractions obtained from Ixodes persulcatus ticks was pyrosequencing. After de novo assembly contigs were classified using BLAST and BLSOM program.</STUDY_DESCRIPTION>
        </DESCRIPTOR>
    </STUDY>
</STUDY_SET>
