<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT accession="DRX025692" center_name="MRI-TMD" alias="DRX025692">
        <TITLE>Illumina Genome Analyzer IIx sequencing of SAMD00024373</TITLE>
        <STUDY_REF accession="DRP002835" refcenter="MRI-TMD" refname="DRP002835">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB3376</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS022165" refcenter="MRI-TMD" refname="DRS022165">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00024373</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>siANGPTL2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>MDA-MB231 cells were cultured in Leibovitz's L15 (Wako, Osaka, Japan) medium supplemented with 10% FCS, under 100% air without CO2, and transfected with siANGPTL2 vectors using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's protocol. The cells were lysed in Trizol reagent (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. Sequencing sample libraries were prepared using a TruSeq RNA Sample Prep Kit (Illumina, San Diego, CA, USA).  </LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>38</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT accession="DRX025693" center_name="MRI-TMD" alias="DRX025693">
        <TITLE>Illumina Genome Analyzer IIx sequencing of SAMD00024374</TITLE>
        <STUDY_REF accession="DRP002835" refcenter="MRI-TMD" refname="DRP002835">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB3376</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR accession="DRS022166" refcenter="MRI-TMD" refname="DRS022166">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00024374</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>LacZ</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>MDA-MB231 cells were cultured in Leibovitz's L15 (Wako, Osaka, Japan) medium supplemented with 10% FCS, under 100% air without CO2, and transfected with LacZ (control) vectors using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's protocol. The cells were lysed in Trizol reagent (Invitrogen) and total RNA was extracted according to the manufacturer's protocol. Sequencing sample libraries were prepared using a TruSeq RNA Sample Prep Kit (Illumina, San Diego, CA, USA).  </LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>38</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
