SAMD00024612 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% methanol. For methanol, 30 micromolar Ca (Calcium chloride) was added. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_Ca strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_Ca SAMD00024613 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% methanol. For methanol, 30 micromolar Ca (Calcium chloride) plus Ho (Holmium chloride) was added. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_CaHo strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_CaHo SAMD00024614 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% methanol. For methanol, 30 micromolar Ca (Calcium chloride) plus La (Lanthanum chloride) was added. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_CaLa strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_CaLa SAMD00024615 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% methanol. For methanol, 30 micromolar Ca (Calcium chloride) plus Lu (Lutetium chloride) was added. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_CaLu strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_CaLu SAMD00024616 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% methanol. For methanol, 30 micromolar La (Lanthanum chloride) was added. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_La strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_La SAMD00024617 1577727 Methylobacterium sp. MA-22A description Methylobacterium sp. 22A was grown in 100-ml methanol medium prepared in 500-ml shaking flask. The media contain 0.5% succinate. In log phase of the growth (OD600=0.3-0.4), the cells were harvested by centrifugation (9000 rpm, 4 C, 5 min), and frozen by liquid nitrogen. The cells were subjected to total RNA extraction with hot phenol extraction procedure (Babst et al., 1996, Mol Microbiol 19:827-839). Then ribosomal RNA was depleted by using Ribo-Zero rRNA removal kits (Gram-negative bacteria) (Epicentre) according to the manufacturer's protocol. bioproject_id PRJDB3341 sample_name Methylobacterium_sp. 22A_RNAseq_S strain MA-22A sample_title Methylobacterium_sp. 22A_RNAseq_S