<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT alias="DRX066980" center_name="KYOTO_GM" accession="DRX066980">
        <TITLE>Illumina HiSeq 2500 sequencing of SAMD00064362</TITLE>
        <STUDY_REF refname="DRP003670" refcenter="KYOTO_GM" accession="DRP003670">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5205</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS047023" refcenter="KYOTO_GM" accession="DRS047023">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00064362</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>d4c3_PGCLC_1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>50ng of genomic DNA spiked with 1.0% (w/w) of unmethylated lambda phage DNA (Promega) was subjected to bisulfite conversions and library constructions for amplification-free whole-genome bisulfite sequencing analyses, using the post-bisulfite adaptor tagging (PBAT) method as described previously (Miura et al., 2012; Kobayashi et al., 2013; Shirane et al., 2013).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>116</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX066981" center_name="KYOTO_GM" accession="DRX066981">
        <TITLE>Illumina HiSeq 2500 sequencing of SAMD00064363</TITLE>
        <STUDY_REF refname="DRP003670" refcenter="KYOTO_GM" accession="DRP003670">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5205</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS047024" refcenter="KYOTO_GM" accession="DRS047024">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00064363</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>d4c3_PGCLC_2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>50ng of genomic DNA spiked with 1.0% (w/w) of unmethylated lambda phage DNA (Promega) was subjected to bisulfite conversions and library constructions for amplification-free whole-genome bisulfite sequencing analyses, using the post-bisulfite adaptor tagging (PBAT) method as described previously (Miura et al., 2012; Kobayashi et al., 2013; Shirane et al., 2013).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>116</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX066982" center_name="KYOTO_GM" accession="DRX066982">
        <TITLE>Illumina HiSeq 2500 sequencing of SAMD00064364</TITLE>
        <STUDY_REF refname="DRP003670" refcenter="KYOTO_GM" accession="DRP003670">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5205</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS047025" refcenter="KYOTO_GM" accession="DRS047025">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00064364</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>d4c7_PGCLC_1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>50ng of genomic DNA spiked with 1.0% (w/w) of unmethylated lambda phage DNA (Promega) was subjected to bisulfite conversions and library constructions for amplification-free whole-genome bisulfite sequencing analyses, using the post-bisulfite adaptor tagging (PBAT) method as described previously (Miura et al., 2012; Kobayashi et al., 2013; Shirane et al., 2013).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>116</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX066983" center_name="KYOTO_GM" accession="DRX066983">
        <TITLE>Illumina HiSeq 2500 sequencing of SAMD00064365</TITLE>
        <STUDY_REF refname="DRP003670" refcenter="KYOTO_GM" accession="DRP003670">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5205</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS047026" refcenter="KYOTO_GM" accession="DRS047026">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00064365</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>d4c7_PGCLC_2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>50ng of genomic DNA spiked with 1.0% (w/w) of unmethylated lambda phage DNA (Promega) was subjected to bisulfite conversions and library constructions for amplification-free whole-genome bisulfite sequencing analyses, using the post-bisulfite adaptor tagging (PBAT) method as described previously (Miura et al., 2012; Kobayashi et al., 2013; Shirane et al., 2013).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>116</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
