<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT alias="DRX083338" center_name="AIST" accession="DRX083338">
        <TITLE>Escherichia coli MY205_E1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090633" refcenter="AIST" accession="DRS090633">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076819</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_E1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="284"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083339" center_name="AIST" accession="DRX083339">
        <TITLE>Escherichia coli MY205_E2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090634" refcenter="AIST" accession="DRS090634">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076820</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_E2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083340" center_name="AIST" accession="DRX083340">
        <TITLE>Escherichia coli MY205_71</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090635" refcenter="AIST" accession="DRS090635">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076821</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_71</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="184"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083341" center_name="AIST" accession="DRX083341">
        <TITLE>Escherichia coli MY205_11</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090636" refcenter="AIST" accession="DRS090636">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076822</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_11</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="189"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083342" center_name="AIST" accession="DRX083342">
        <TITLE>Escherichia coli MY205_12</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090637" refcenter="AIST" accession="DRS090637">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076823</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_12</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="183"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083343" center_name="AIST" accession="DRX083343">
        <TITLE>Escherichia coli MY205_61</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090638" refcenter="AIST" accession="DRS090638">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076824</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_61</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="184"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083344" center_name="AIST" accession="DRX083344">
        <TITLE>Escherichia coli MY205_72</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090639" refcenter="AIST" accession="DRS090639">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076825</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_72</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="188"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083345" center_name="AIST" accession="DRX083345">
        <TITLE>Escherichia coli MY205_81</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090640" refcenter="AIST" accession="DRS090640">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076826</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_81</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="180"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083346" center_name="AIST" accession="DRX083346">
        <TITLE>Escherichia coli MY205_82</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090641" refcenter="AIST" accession="DRS090641">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076827</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_82</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="185"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083347" center_name="AIST" accession="DRX083347">
        <TITLE>Escherichia coli MY205_E1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090642" refcenter="AIST" accession="DRS090642">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076828</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_E1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="195"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083348" center_name="AIST" accession="DRX083348">
        <TITLE>Escherichia coli MY205_E2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090643" refcenter="AIST" accession="DRS090643">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076829</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_E2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="186"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083349" center_name="AIST" accession="DRX083349">
        <TITLE>Escherichia coli MY205_62</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090644" refcenter="AIST" accession="DRS090644">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076830</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_62</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="186"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083350" center_name="AIST" accession="DRX083350">
        <TITLE>Escherichia coli MY205_92</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090645" refcenter="AIST" accession="DRS090645">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076831</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_92</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="175"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083351" center_name="AIST" accession="DRX083351">
        <TITLE>Escherichia coli MY205_91</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090646" refcenter="AIST" accession="DRS090646">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076832</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_91</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="177"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083352" center_name="AIST" accession="DRX083352">
        <TITLE>Escherichia coli MY205_NS5-1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090647" refcenter="AIST" accession="DRS090647">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076833</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS5-1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="166"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083353" center_name="AIST" accession="DRX083353">
        <TITLE>Escherichia coli MY205_NS5-2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090648" refcenter="AIST" accession="DRS090648">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076834</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS5-2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="166"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083354" center_name="AIST" accession="DRX083354">
        <TITLE>Escherichia coli MY205_NS11-1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090649" refcenter="AIST" accession="DRS090649">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076835</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS11-1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="163"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083355" center_name="AIST" accession="DRX083355">
        <TITLE>Escherichia coli MY205_NS11-2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090650" refcenter="AIST" accession="DRS090650">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076836</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS11-2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="175"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083356" center_name="AIST" accession="DRX083356">
        <TITLE>Escherichia coli MY205_NS11-1416-1484-1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090651" refcenter="AIST" accession="DRS090651">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076837</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS11-1416-1484-1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="150"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083357" center_name="AIST" accession="DRX083357">
        <TITLE>Escherichia coli MY205_NS11-1416-1484-2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090652" refcenter="AIST" accession="DRS090652">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076838</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli MY205_NS11-1416-1484-2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="151"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083358" center_name="AIST" accession="DRX083358">
        <TITLE>Escherichia coli KT101_Eco1</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090653" refcenter="AIST" accession="DRS090653">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076839</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli KT101_Eco1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="151"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX083359" center_name="AIST" accession="DRX083359">
        <TITLE>Escherichia coli KT101_Eco2</TITLE>
        <STUDY_REF refname="DRP004898" refcenter="AIST" accession="DRP004898">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5627</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS090654" refcenter="AIST" accession="DRS090654">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00076840</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>Escherichia coli KT101_Eco2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>Inverse rRNA</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="162"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal RNA was removed by using Epicentre Ribozero Magnetic Kit (Gram-Negative Bacteria). The sequence library was prepared according to the Agilent SureSelect Strand Specific RNA Prep Kit protocol (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>200</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>101</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
