<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<EXPERIMENT_SET>
    <EXPERIMENT alias="DRX084979" center_name="OSAKAMED" accession="DRX084979">
        <TITLE>Illumina HiSeq 3000 sequencing of SAMD00079356</TITLE>
        <STUDY_REF refname="DRP004519" refcenter="OSAKAMED" accession="DRP004519">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5523</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS076436" refcenter="OSAKAMED" accession="DRS076436">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00079356</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>CD4+CD8- DN thymocytes from C57BL/6J mouse [replicate1]</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ssRNA-seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The rRNA was removed from total RNA  by using illumina Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat). The sequence template was prepared by using Agilent SureSelect Strand Specific RNA Prep Kit (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>36</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX084980" center_name="OSAKAMED" accession="DRX084980">
        <TITLE>Illumina HiSeq 3000 sequencing of SAMD00079357</TITLE>
        <STUDY_REF refname="DRP004519" refcenter="OSAKAMED" accession="DRP004519">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5523</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS076437" refcenter="OSAKAMED" accession="DRS076437">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00079357</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>CD4+CD8- DN thymocytes from C57BL/6J mouse [replicate2]</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ssRNA-seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The rRNA was removed from total RNA  by using illumina Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat). The sequence template was prepared by using Agilent SureSelect Strand Specific RNA Prep Kit (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>36</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX084981" center_name="OSAKAMED" accession="DRX084981">
        <TITLE>Illumina HiSeq 3000 sequencing of SAMD00079358</TITLE>
        <STUDY_REF refname="DRP004519" refcenter="OSAKAMED" accession="DRP004519">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB5523</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS076438" refcenter="OSAKAMED" accession="DRS076438">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00079358</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>CD4+CD8- DN thymocytes from C57BL/6J mouse [replicate3]</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ssRNA-seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <SINGLE/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>The rRNA was removed from total RNA  by using illumina Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat). The sequence template was prepared by using Agilent SureSelect Strand Specific RNA Prep Kit (skip the PolyA selection step).</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>36</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
