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<EXPERIMENT_SET>
    <EXPERIMENT alias="DRX123807" center_name="UT_IMCB" accession="DRX123807">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119009</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085395" refcenter="UT_IMCB" accession="DRS085395">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119009</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-150_INPUT1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
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                    <SPOT_LENGTH>75</SPOT_LENGTH>
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                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
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                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123808" center_name="UT_IMCB" accession="DRX123808">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119010</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085396" refcenter="UT_IMCB" accession="DRS085396">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119010</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-150_INPUT2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123809" center_name="UT_IMCB" accession="DRX123809">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119011</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085397" refcenter="UT_IMCB" accession="DRS085397">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119011</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-150_IP1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123810" center_name="UT_IMCB" accession="DRX123810">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119012</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085398" refcenter="UT_IMCB" accession="DRS085398">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119012</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-150_IP2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123811" center_name="UT_IMCB" accession="DRX123811">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119013</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085399" refcenter="UT_IMCB" accession="DRS085399">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119013</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-15_INPUT1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123812" center_name="UT_IMCB" accession="DRX123812">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119014</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085400" refcenter="UT_IMCB" accession="DRS085400">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119014</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-15_INPUT2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123813" center_name="UT_IMCB" accession="DRX123813">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119015</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085401" refcenter="UT_IMCB" accession="DRS085401">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119015</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-15_IP1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123814" center_name="UT_IMCB" accession="DRX123814">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119016</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085402" refcenter="UT_IMCB" accession="DRS085402">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119016</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>WT_RDN1-15_IP2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
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                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123815" center_name="UT_IMCB" accession="DRX123815">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119017</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085403" refcenter="UT_IMCB" accession="DRS085403">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119017</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-150_INPUT1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123816" center_name="UT_IMCB" accession="DRX123816">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119018</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085404" refcenter="UT_IMCB" accession="DRS085404">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119018</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-150_INPUT2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123817" center_name="UT_IMCB" accession="DRX123817">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119019</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085405" refcenter="UT_IMCB" accession="DRS085405">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119019</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-150_IP1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123818" center_name="UT_IMCB" accession="DRX123818">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119020</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085406" refcenter="UT_IMCB" accession="DRS085406">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119020</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-150_IP2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123819" center_name="UT_IMCB" accession="DRX123819">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119021</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085407" refcenter="UT_IMCB" accession="DRS085407">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119021</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-15_INPUT1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123820" center_name="UT_IMCB" accession="DRX123820">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119022</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085408" refcenter="UT_IMCB" accession="DRS085408">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119022</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-15_INPUT2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123821" center_name="UT_IMCB" accession="DRX123821">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119023</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085409" refcenter="UT_IMCB" accession="DRS085409">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119023</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-15_IP1</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
    <EXPERIMENT alias="DRX123822" center_name="UT_IMCB" accession="DRX123822">
        <TITLE>Illumina MiSeq paired end sequencing of SAMD00119024</TITLE>
        <STUDY_REF refname="DRP004716" refcenter="UT_IMCB" accession="DRP004716">
            <IDENTIFIERS>
                <PRIMARY_ID label="BioProject ID">PRJDB7030</PRIMARY_ID>
            </IDENTIFIERS>
        </STUDY_REF>
        <DESIGN>
            <DESIGN_DESCRIPTION></DESIGN_DESCRIPTION>
            <SAMPLE_DESCRIPTOR refname="DRS085410" refcenter="UT_IMCB" accession="DRS085410">
                <IDENTIFIERS>
                    <PRIMARY_ID label="BioSample ID">SAMD00119024</PRIMARY_ID>
                </IDENTIFIERS>
            </SAMPLE_DESCRIPTOR>
            <LIBRARY_DESCRIPTOR>
                <LIBRARY_NAME>UAF30-MN3HA_RDN1-15_IP2</LIBRARY_NAME>
                <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
                <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
                <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
                <LIBRARY_LAYOUT>
                    <PAIRED NOMINAL_LENGTH="257" NOMINAL_SDEV="132.0"/>
                </LIBRARY_LAYOUT>
                <LIBRARY_CONSTRUCTION_PROTOCOL>YPD cultured cells were cross-linked by 1 percent formaldehyde at 30degree for 30 minutes. After quenching with Glycine, the cell pellets of 21E9 cells were lysed by YTZ-beads. The extracts were recovered with 400 micro-l of lysis buffer 50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 percent Triton-X100, 0.1 percent Na-deoxycholate., and sheared by Covaris S220 to 100bp average. After pelleting, volume of the soluble fraction was adjusted to 1115 micro-l. 50 microl of the extracts were used for INPUT samples. 10 micro-g of anti-HA F-7 mouse antibody was added to 1ml extract and immunoprecipitated with 100 micro-l of ProteinG-dyanabeads. After reverse-crosslinking and DNA purification, sequencing libraries were prepared by KAPA Hyperprep kit and TruseqHT-compatible adaptors. The ligated libraries were amplified by KAPA library amplification kit and purified by AMpureXP double size selection.</LIBRARY_CONSTRUCTION_PROTOCOL>
            </LIBRARY_DESCRIPTOR>
            <SPOT_DESCRIPTOR>
                <SPOT_DECODE_SPEC>
                    <SPOT_LENGTH>75</SPOT_LENGTH>
                    <READ_SPEC>
                        <READ_INDEX>0</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Forward</READ_TYPE>
                        <BASE_COORD>1</BASE_COORD>
                    </READ_SPEC>
                    <READ_SPEC>
                        <READ_INDEX>1</READ_INDEX>
                        <READ_CLASS>Application Read</READ_CLASS>
                        <READ_TYPE>Reverse</READ_TYPE>
                        <BASE_COORD>38</BASE_COORD>
                    </READ_SPEC>
                </SPOT_DECODE_SPEC>
            </SPOT_DESCRIPTOR>
        </DESIGN>
        <PLATFORM>
            <ILLUMINA>
                <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
            </ILLUMINA>
        </PLATFORM>
    </EXPERIMENT>
</EXPERIMENT_SET>
