ERX007137 SC_EXP_3945_8 <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "40_3A_gDNA_P4cells"; library "40_3A_gDNA_P4cells 1" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS001421" refname="40_3A_gDNA_P4cells-sc-2010-05-07-6982" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS001421</PRIMARY_ID> <SUBMITTER_ID namespace="SC">40_3A_gDNA_P4cells-sc-2010-05-07-6982</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>40_3A_gDNA_P4cells 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="3500"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Long range</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_1" center_name="SC" accession="ERX007138"> <IDENTIFIERS> <PRIMARY_ID>ERX007138</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "49_1G_FLS_AB 1"; library "49_1G_FLS_AB 1 1" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS001960" refname="49_1G_FLS_AB_1-sc-2010-05-07-7299" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS001960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">49_1G_FLS_AB_1-sc-2010-05-07-7299</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>49_1G_FLS_AB 1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="550"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_2" center_name="SC" accession="ERX007139"> <IDENTIFIERS> <PRIMARY_ID>ERX007139</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "33_4A_T5_gDNA"; library "33_4A_T5_gDNA 88142" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002591" refname="33_4A_T5_gDNA-sc-2010-05-07-9885" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002591</PRIMARY_ID> <SUBMITTER_ID namespace="SC">33_4A_T5_gDNA-sc-2010-05-07-9885</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>33_4A_T5_gDNA 88142</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4124_7" center_name="SC" accession="ERX007140"> <IDENTIFIERS> <PRIMARY_ID>ERX007140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4124_7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "49_1G_FLS_AB 1"; library "49_1G_FLS_AB 1 1" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS001960" refname="49_1G_FLS_AB_1-sc-2010-05-07-7299" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS001960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">49_1G_FLS_AB_1-sc-2010-05-07-7299</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>49_1G_FLS_AB 1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="550"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_7" center_name="SC" accession="ERX007141"> <IDENTIFIERS> <PRIMARY_ID>ERX007141</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "52_2H_T10_gDNA"; library "52_2H_T10_gDNA 88146" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002595" refname="52_2H_T10_gDNA-sc-2010-05-07-9889" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002595</PRIMARY_ID> <SUBMITTER_ID namespace="SC">52_2H_T10_gDNA-sc-2010-05-07-9889</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>52_2H_T10_gDNA 88146</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3785_2" center_name="SC" accession="ERX007142"> <IDENTIFIERS> <PRIMARY_ID>ERX007142</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3785_2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "45_4H_FLS_D 1"; library "45_4H_FLS_D 1 1" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS001419" refname="45_4H_FLS_D_1-sc-2010-05-07-7298" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS001419</PRIMARY_ID> <SUBMITTER_ID namespace="SC">45_4H_FLS_D_1-sc-2010-05-07-7298</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>45_4H_FLS_D 1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="550"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3785_3" center_name="SC" accession="ERX007143"> <IDENTIFIERS> <PRIMARY_ID>ERX007143</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3785_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "49_1G_FLS_AB 1"; library "49_1G_FLS_AB 1 1" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS001960" refname="49_1G_FLS_AB_1-sc-2010-05-07-7299" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS001960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">49_1G_FLS_AB_1-sc-2010-05-07-7299</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>49_1G_FLS_AB 1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="550"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_6" center_name="SC" accession="ERX007144"> <IDENTIFIERS> <PRIMARY_ID>ERX007144</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "33_4B_T3_gDNA"; library "33_4B_T3_gDNA 88145" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002594" refname="33_4B_T3_gDNA-sc-2010-05-07-9888" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002594</PRIMARY_ID> <SUBMITTER_ID namespace="SC">33_4B_T3_gDNA-sc-2010-05-07-9888</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>33_4B_T3_gDNA 88145</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_3" center_name="SC" accession="ERX007145"> <IDENTIFIERS> <PRIMARY_ID>ERX007145</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "49_1G_T4_gDNA"; library "49_1G_T4_gDNA 88143" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002592" refname="49_1G_T4_gDNA-sc-2010-05-07-9886" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002592</PRIMARY_ID> <SUBMITTER_ID namespace="SC">49_1G_T4_gDNA-sc-2010-05-07-9886</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>49_1G_T4_gDNA 88143</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_8" center_name="SC" accession="ERX007146"> <IDENTIFIERS> <PRIMARY_ID>ERX007146</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "44_4A_T6_gDNA"; library "44_4A_T6_gDNA 88147" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002596" refname="44_4A_T6_gDNA-sc-2010-05-07-9890" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002596</PRIMARY_ID> <SUBMITTER_ID namespace="SC">44_4A_T6_gDNA-sc-2010-05-07-9890</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>44_4A_T6_gDNA 88147</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4279_5" center_name="SC" accession="ERX007147"> <IDENTIFIERS> <PRIMARY_ID>ERX007147</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4279_5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000090" refname="Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "53_2G_T5_gDNA"; library "53_2G_T5_gDNA 88144" for the "Study of the cancer genome in T lymphoma showing a recurrent chromosome 12 translocation" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002593" refname="53_2G_T5_gDNA-sc-2010-05-07-9887" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002593</PRIMARY_ID> <SUBMITTER_ID namespace="SC">53_2G_T5_gDNA-sc-2010-05-07-9887</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>53_2G_T5_gDNA 88144</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="300"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Double size selected</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>74</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>38</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>