ERX007374 SC_EXP_4027_2 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/02/BPK 080/0 cl1"; library "BPK080A1 1" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008297" refname="MHOM_NP_02_BPK_080_0_cl1-sc-2010-05-07-9425" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008297</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_02_BPK_080_0_cl1-sc-2010-05-07-9425</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK080A1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3013_7" center_name="The Wellcome Trust Sanger Institute" accession="ERX007375"> <IDENTIFIERS> <PRIMARY_ID>ERX007375</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3013_7</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_3013_7</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK085/0"; library "BPK85_0 1" for study accession ERP009989. ERS008283 SAMEA817485 MHOM_NP_02_BPK085_0-sc-2010-05-07-5747 BPK85_0 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007376 SC_EXP_3282_5 SC_EXP_3282_5 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/--/BPK 206/0 cl10"; library "K206moc10 1" for study accession ERP009989. ERS008287 SAMEA817477 MHOM_NP____BPK_206_0_cl10-sc-2010-05-07-6705 K206moc10 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007377 SC_EXP_4027_3 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/03/BPK 288/0 cl7"; library "BPK288A1 1" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008299" refname="MHOM_NP_03_BPK_288_0_cl7-sc-2010-05-07-9427" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008299</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_03_BPK_288_0_cl7-sc-2010-05-07-9427</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK288A1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4244_1" center_name="SC" accession="ERX007378"> <IDENTIFIERS> <PRIMARY_ID>ERX007378</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4244_1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/02/BPK 043/0 cl2"; library "BPK043A1 85753" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008306" refname="MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-10027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008306</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-10027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK043A1 85753</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4213_3" center_name="SC" accession="ERX007379"> <IDENTIFIERS> <PRIMARY_ID>ERX007379</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4213_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/IN/--/568 cl1"; library "BHU568A1 86135" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008308" refname="MHOM_IN____568_cl1-sc-2010-05-07-10082" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008308</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_IN____568_cl1-sc-2010-05-07-10082</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BHU568A1 86135</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4063_5" center_name="The Wellcome Trust Sanger Institute" accession="ERX007352"> <IDENTIFIERS> <PRIMARY_ID>ERX007352</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4063_5</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_4063_5</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 282/0 cl4"; library "BPK282D4 1" for study accession ERP009989. ERS008302 SAMEA817468 MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9430 BPK282D4 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007353 SC_EXP_3013_2 SC_EXP_3013_2 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "BKP007"; library "BKP007 1" for study accession ERP009989. ERS008281 SAMEA817489 BKP007-sc-2010-05-07-5745 BKP007 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007354 SC_EXP_4027_1 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/02/BPK 067/0 cl12"; library "BPK067A1 1" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008296" refname="MHOM_NP_02_BPK_067_0_cl12-sc-2010-05-07-9424" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008296</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_02_BPK_067_0_cl12-sc-2010-05-07-9424</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK067A1 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3013_5" center_name="The Wellcome Trust Sanger Institute" accession="ERX007355"> <IDENTIFIERS> <PRIMARY_ID>ERX007355</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3013_5</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_3013_5</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 178/0 cl3"; library "BPK178_0cl3 1" for study accession ERP009989. ERS008279 SAMEA817499 MHOM_NP_02_BPK_178_0_cl3-sc-2010-05-07-5743 BPK178_0cl3 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007356 SC_EXP_4063_3 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/03/BPK 275/1 cl3"; library "BPK275B2 1" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008298" refname="MHOM_NP_03_BPK_275_1_cl3-sc-2010-05-07-9426" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008298</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_03_BPK_275_1_cl3-sc-2010-05-07-9426</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK275B2 1</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3917_8" center_name="The Wellcome Trust Sanger Institute" accession="ERX007357"> <IDENTIFIERS> <PRIMARY_ID>ERX007357</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3917_8</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_3917_8</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 043/0 cl2"; library "BKP043m0c2 1" for study accession ERP009989. ERS008291 SAMEA817516 MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-8431 BKP043m0c2 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007358 SC_EXP_3057_2 SC_EXP_3057_2 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/03/BPK 173/1 cl9"; library "BKP173_1cl9 1" for study accession ERP009989. ERS008277 SAMEA817503 MHOM_NP_03_BPK_173_1_cl9-sc-2010-05-07-5741 BKP173_1cl9 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007359 SC_EXP_3057_1 SC_EXP_3057_1 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/03/BPK 275/0 cl18"; library "BPK275cl18 1" for study accession ERP009989. ERS008278 SAMEA817497 MHOM_NP_03_BPK_275_0_cl18-sc-2010-05-07-5742 BPK275cl18 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007360 SC_EXP_4164_8 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/NP/02/BPK 043/0 cl2"; library "BPK043A1 85753" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008306" refname="MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-10027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008306</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-10027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BPK043A1 85753</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3055_8" center_name="The Wellcome Trust Sanger Institute" accession="ERX007361"> <IDENTIFIERS> <PRIMARY_ID>ERX007361</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3055_8</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_3055_8</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 087/0 cl11"; library "BPK87cl11 1" for study accession ERP009989. ERS008285 SAMEA817481 MHOM_NP_02_BPK_087_0_cl11-sc-2010-05-07-5749 BPK87cl11 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007362 SC_EXP_4027_6 SC_EXP_4027_6 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 282/0 cl4"; library "BPK282C3 1" for study accession ERP009989. ERS008301 SAMEA817473 MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9429 BPK282C3 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007363 SC_EXP_3013_1 SC_EXP_3013_1 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "BKP007cl7"; library "BKP007cl7 1" for study accession ERP009989. ERS008282 SAMEA817487 BKP007cl7-sc-2010-05-07-5746 BKP007cl7 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007364 SC_EXP_2821_1 SC_EXP_2821_1 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 282/0 cl4"; library "L. donovani 282 cl2 1" for study accession ERP009989. ERS008275 SAMEA817505 MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-1992 L. donovani 282 cl2 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007365 SC_EXP_4213_2 SC_EXP_4213_2 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 173/0 cl3"; library "BPK173C3 86134" for study accession ERP009989. ERS008307 SAMEA817464 MHOM_NP_02_BPK_173_0_cl3-sc-2010-05-07-10081 BPK173C3 86134 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007366 SC_EXP_3427_1 SC_EXP_3427_1 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK085/0 cl8"; library "BPK85cl8 1" for study accession ERP009989. ERS008284 SAMEA817483 MHOM_NP_02_BPK085_0_cl8-sc-2010-05-07-5748 BPK85cl8 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007367 SC_EXP_4027_5 SC_EXP_4027_5 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/03/BPK 173/1 cl9"; library "BPK173D4 1" for study accession ERP009989. ERS008300 SAMEA817471 MHOM_NP_03_BPK_173_1_cl9-sc-2010-05-07-9428 BPK173D4 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007368 SC_EXP_4213_5 <STUDY_REF accession="ERP000140" refname="Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Genomic diversity in Leishmania donovani in Indian subcontinent.-sc-2010-04-01</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of sample "MHOM/IN/--/573 cl3"; library "BHU573A1 86136" for the "Genomic diversity in Leishmania donovani in Indian subcontinent." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS008309" refname="MHOM_IN____573_cl3-sc-2010-05-07-10083" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS008309</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MHOM_IN____573_cl3-sc-2010-05-07-10083</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>BHU573A1 86136</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>No PCR</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>77</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3057_3" center_name="The Wellcome Trust Sanger Institute" accession="ERX007369"> <IDENTIFIERS> <PRIMARY_ID>ERX007369</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3057_3</SUBMITTER_ID> <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_EXP_3057_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/--/BPK 190/0 cl3"; library "BPK190cl3 1" for study accession ERP009989. ERS008286 SAMEA817479 MHOM_NP____BPK_190_0_cl3-sc-2010-05-07-5750 BPK190cl3 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007370 SC_EXP_3212_2 SC_EXP_3212_2 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 178/0 cl3"; library "BPK178_0cl3 1" for study accession ERP009989. ERS008279 SAMEA817499 MHOM_NP_02_BPK_178_0_cl3-sc-2010-05-07-5743 BPK178_0cl3 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007371 SC_EXP_3055_7 SC_EXP_3055_7 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 173/0 cl3"; library "BK173_0cl3 1" for study accession ERP009989. ERS008276 SAMEA817501 MHOM_NP_02_BPK_173_0_cl3-sc-2010-05-07-5740 BK173_0cl3 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007372 SC_EXP_4027_7 SC_EXP_4027_7 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 282/0 cl4"; library "BPK282E5 1" for study accession ERP009989. ERS008303 SAMEA817469 MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9431 BPK282E5 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II ERX007373 SC_EXP_3013_3 SC_EXP_3013_3 Illumina Genome Analyzer II paired end sequencing ERP009989 Leishmania_donovani_genome_sequencing-sc-3594 Illumina sequencing of sample "MHOM/NP/02/BPK 294/0 cl1"; library "BPK294_0cl1 1" for study accession ERP009989. ERS008280 SAMEA817491 MHOM_NP_02_BPK_294_0_cl1-sc-2010-05-07-5744 BPK294_0cl1 1 WGS GENOMIC RANDOM No PCR 152 0 Application Read Forward 1 1 Application Read Reverse 77 Illumina Genome Analyzer II