ERX007947 SC_EXP_4846_2 <STUDY_REF accession="ERP000192" refname="Variation discovery in Russian TB isolates-sc-2010-04-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000192</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Variation discovery in Russian TB isolates-sc-2010-04-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "SamaraTB B2 P3" for the "Discovery of sequence diversity in Mycobacterium tuberculosis (Russia collection)" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS009104" member_name="4846_2#1"> <IDENTIFIERS> <PRIMARY_ID>ERS009104</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009114" member_name="4846_2#2"> <IDENTIFIERS> <PRIMARY_ID>ERS009114</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009113" member_name="4846_2#3"> <IDENTIFIERS> <PRIMARY_ID>ERS009113</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009112" member_name="4846_2#4"> <IDENTIFIERS> <PRIMARY_ID>ERS009112</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009111" member_name="4846_2#5"> <IDENTIFIERS> <PRIMARY_ID>ERS009111</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009110" member_name="4846_2#6"> <IDENTIFIERS> <PRIMARY_ID>ERS009110</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009109" member_name="4846_2#7"> <IDENTIFIERS> <PRIMARY_ID>ERS009109</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009108" member_name="4846_2#8"> <IDENTIFIERS> <PRIMARY_ID>ERS009108</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009107" member_name="4846_2#9"> <IDENTIFIERS> <PRIMARY_ID>ERS009107</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009106" member_name="4846_2#10"> <IDENTIFIERS> <PRIMARY_ID>ERS009106</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009105" member_name="4846_2#11"> <IDENTIFIERS> <PRIMARY_ID>ERS009105</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009115" member_name="4846_2#12"> <IDENTIFIERS> <PRIMARY_ID>ERS009115</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>SamaraTB B2 P3</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> <BASECALL read_group_tag="4" min_match="5" max_mismatch="1" match_edge="end">TGACCA</BASECALL> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> <BASECALL read_group_tag="11" min_match="5" max_mismatch="1" match_edge="end">GGCTAC</BASECALL> <BASECALL read_group_tag="12" min_match="5" max_mismatch="1" match_edge="end">CTTGTA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>61</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4846_3" center_name="SC" accession="ERX007948"> <IDENTIFIERS> <PRIMARY_ID>ERX007948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4846_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000192" refname="Variation discovery in Russian TB isolates-sc-2010-04-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000192</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Variation discovery in Russian TB isolates-sc-2010-04-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "SamaraTB B2 P4" for the "Discovery of sequence diversity in Mycobacterium tuberculosis (Russia collection)" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS009116" member_name="4846_3#1"> <IDENTIFIERS> <PRIMARY_ID>ERS009116</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009126" member_name="4846_3#2"> <IDENTIFIERS> <PRIMARY_ID>ERS009126</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009125" member_name="4846_3#3"> <IDENTIFIERS> <PRIMARY_ID>ERS009125</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009124" member_name="4846_3#4"> <IDENTIFIERS> <PRIMARY_ID>ERS009124</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009123" member_name="4846_3#5"> <IDENTIFIERS> <PRIMARY_ID>ERS009123</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009120" member_name="4846_3#6"> <IDENTIFIERS> <PRIMARY_ID>ERS009120</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009119" member_name="4846_3#7"> <IDENTIFIERS> <PRIMARY_ID>ERS009119</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009118" member_name="4846_3#8"> <IDENTIFIERS> <PRIMARY_ID>ERS009118</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009117" member_name="4846_3#9"> <IDENTIFIERS> <PRIMARY_ID>ERS009117</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009127" member_name="4846_3#10"> <IDENTIFIERS> <PRIMARY_ID>ERS009127</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009122" member_name="4846_3#11"> <IDENTIFIERS> <PRIMARY_ID>ERS009122</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009121" member_name="4846_3#12"> <IDENTIFIERS> <PRIMARY_ID>ERS009121</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>SamaraTB B2 P4</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> <BASECALL read_group_tag="4" min_match="5" max_mismatch="1" match_edge="end">TGACCA</BASECALL> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> <BASECALL read_group_tag="11" min_match="5" max_mismatch="1" match_edge="end">GGCTAC</BASECALL> <BASECALL read_group_tag="12" min_match="5" max_mismatch="1" match_edge="end">CTTGTA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>61</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>