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Campylobacter-sc-2010-03-26" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000129</PRIMARY_ID> <SUBMITTER_ID namespace="SC">The Genomics of Speciation in Campylobacter-sc-2010-03-26</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "264_pool_9" for the "Discovery of sequence diversity in Campylobacter spp." study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS009659" member_name="5008_6#1"> <IDENTIFIERS> <PRIMARY_ID>ERS009659</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009660" member_name="5008_6#2"> <IDENTIFIERS> <PRIMARY_ID>ERS009660</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009661" member_name="5008_6#3"> <IDENTIFIERS> <PRIMARY_ID>ERS009661</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009662" member_name="5008_6#4"> <IDENTIFIERS> <PRIMARY_ID>ERS009662</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009663" member_name="5008_6#5"> <IDENTIFIERS> <PRIMARY_ID>ERS009663</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009664" member_name="5008_6#6"> <IDENTIFIERS> <PRIMARY_ID>ERS009664</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009665" member_name="5008_6#7"> <IDENTIFIERS> <PRIMARY_ID>ERS009665</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009666" member_name="5008_6#8"> <IDENTIFIERS> <PRIMARY_ID>ERS009666</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009667" member_name="5008_6#9"> <IDENTIFIERS> <PRIMARY_ID>ERS009667</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS009668" member_name="5008_6#10"> <IDENTIFIERS> <PRIMARY_ID>ERS009668</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>264_pool_9</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>63</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>