<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="SC_EXP_5187_1" center_name="SC" accession="ERX009751">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX009751</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_EXP_5187_1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE/>
    <STUDY_REF accession="ERP000262" refname="Clostridium difficile ribotype 027 resequencing-sc-2010-07-07" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP000262</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Clostridium difficile ribotype 027 resequencing-sc-2010-07-07</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "632p07" for the "Clostridium difficile ribotype 027 resequencing" study.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS024887">
        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
            </IDENTIFIERS>
          </DEFAULT_MEMBER>
          <MEMBER accession="ERS012937" member_name="5187_1#1">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012937</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012938" member_name="5187_1#2">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012938</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012939" member_name="5187_1#3">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012939</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012940" member_name="5187_1#4">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012940</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012941" member_name="5187_1#5">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012941</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012942" member_name="5187_1#6">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012942</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012943" member_name="5187_1#7">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012943</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012944" member_name="5187_1#8">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012944</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012945" member_name="5187_1#9">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012945</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012946" member_name="5187_1#10">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012946</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012947" member_name="5187_1#11">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012947</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012948" member_name="5187_1#12">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012948</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>632p07</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="273" NOMINAL_SDEV="76"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode_tag</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL>
              <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL>
              <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL>
              <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL>
              <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL>
              <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL>
              <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL>
              <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL>
              <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL>
              <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL>
              <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL>
              <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>85</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
