ERX009831 SC_EXP_5242_3 <STUDY_REF accession="ERP000245" refname="Streptococcus pneumoniae evolution-sc-2010-06-23" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000245</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus pneumoniae evolution-sc-2010-06-23</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "615p05" for the "Streptococcus pneumoniae evolution" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS011500" member_name="5242_3#1"> <IDENTIFIERS> <PRIMARY_ID>ERS011500</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011501" member_name="5242_3#2"> <IDENTIFIERS> <PRIMARY_ID>ERS011501</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011502" member_name="5242_3#3"> <IDENTIFIERS> <PRIMARY_ID>ERS011502</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011503" member_name="5242_3#4"> <IDENTIFIERS> <PRIMARY_ID>ERS011503</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011504" member_name="5242_3#5"> <IDENTIFIERS> <PRIMARY_ID>ERS011504</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011505" member_name="5242_3#6"> <IDENTIFIERS> <PRIMARY_ID>ERS011505</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011506" member_name="5242_3#7"> <IDENTIFIERS> <PRIMARY_ID>ERS011506</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011507" member_name="5242_3#8"> <IDENTIFIERS> <PRIMARY_ID>ERS011507</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011508" member_name="5242_3#9"> <IDENTIFIERS> <PRIMARY_ID>ERS011508</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011509" member_name="5242_3#10"> <IDENTIFIERS> <PRIMARY_ID>ERS011509</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011510" member_name="5242_3#11"> <IDENTIFIERS> <PRIMARY_ID>ERS011510</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011511" member_name="5242_3#12"> <IDENTIFIERS> <PRIMARY_ID>ERS011511</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>615p05</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="322" NOMINAL_SDEV="18"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>63</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_5242_5" center_name="SC" accession="ERX009832"> <IDENTIFIERS> <PRIMARY_ID>ERX009832</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_5242_5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000245" refname="Streptococcus pneumoniae evolution-sc-2010-06-23" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000245</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus pneumoniae evolution-sc-2010-06-23</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "615p06" for the "Streptococcus pneumoniae evolution" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS011512" member_name="5242_5#1"> <IDENTIFIERS> <PRIMARY_ID>ERS011512</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011513" member_name="5242_5#2"> <IDENTIFIERS> <PRIMARY_ID>ERS011513</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011514" member_name="5242_5#3"> <IDENTIFIERS> <PRIMARY_ID>ERS011514</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011515" member_name="5242_5#4"> <IDENTIFIERS> <PRIMARY_ID>ERS011515</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011516" member_name="5242_5#5"> <IDENTIFIERS> <PRIMARY_ID>ERS011516</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011517" member_name="5242_5#6"> <IDENTIFIERS> <PRIMARY_ID>ERS011517</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011518" member_name="5242_5#7"> <IDENTIFIERS> <PRIMARY_ID>ERS011518</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011519" member_name="5242_5#8"> <IDENTIFIERS> <PRIMARY_ID>ERS011519</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011520" member_name="5242_5#9"> <IDENTIFIERS> <PRIMARY_ID>ERS011520</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011521" member_name="5242_5#10"> <IDENTIFIERS> <PRIMARY_ID>ERS011521</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011522" member_name="5242_5#11"> <IDENTIFIERS> <PRIMARY_ID>ERS011522</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011523" member_name="5242_5#12"> <IDENTIFIERS> <PRIMARY_ID>ERS011523</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>615p06</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="350" NOMINAL_SDEV="80"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>63</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_5242_2" center_name="SC" accession="ERX009833"> <IDENTIFIERS> <PRIMARY_ID>ERX009833</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_5242_2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000245" refname="Streptococcus pneumoniae evolution-sc-2010-06-23" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000245</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus pneumoniae evolution-sc-2010-06-23</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "615p04" for the "Streptococcus pneumoniae evolution" study.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS024887"> <POOL> <DEFAULT_MEMBER> <IDENTIFIERS> <PRIMARY_ID>SRS024887</PRIMARY_ID> </IDENTIFIERS> </DEFAULT_MEMBER> <MEMBER accession="ERS011488" member_name="5242_2#1"> <IDENTIFIERS> <PRIMARY_ID>ERS011488</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011489" member_name="5242_2#2"> <IDENTIFIERS> <PRIMARY_ID>ERS011489</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011490" member_name="5242_2#3"> <IDENTIFIERS> <PRIMARY_ID>ERS011490</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011491" member_name="5242_2#4"> <IDENTIFIERS> <PRIMARY_ID>ERS011491</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011492" member_name="5242_2#5"> <IDENTIFIERS> <PRIMARY_ID>ERS011492</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011493" member_name="5242_2#6"> <IDENTIFIERS> <PRIMARY_ID>ERS011493</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011494" member_name="5242_2#7"> <IDENTIFIERS> <PRIMARY_ID>ERS011494</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011495" member_name="5242_2#8"> <IDENTIFIERS> <PRIMARY_ID>ERS011495</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011496" member_name="5242_2#9"> <IDENTIFIERS> <PRIMARY_ID>ERS011496</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011497" member_name="5242_2#10"> <IDENTIFIERS> <PRIMARY_ID>ERS011497</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011498" member_name="5242_2#11"> <IDENTIFIERS> <PRIMARY_ID>ERS011498</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL> </MEMBER> <MEMBER accession="ERS011499" member_name="5242_2#12"> <IDENTIFIERS> <PRIMARY_ID>ERS011499</PRIMARY_ID> </IDENTIFIERS> <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL> </MEMBER> </POOL> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>615p04</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="291" NOMINAL_SDEV="40"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>63</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>