<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="SC_EXP_5319_3" center_name="SC" accession="ERX009889">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX009889</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_EXP_5319_3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE/>
    <STUDY_REF accession="ERP000255" refname="Long Insert Mouse Genomes-sc-2010-06-30" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP000255</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Long Insert Mouse Genomes-sc-2010-06-30</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of barcoded sample library "3kb_samples_group1" for the "Long Insert Mouse Genomes" study.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS024887">
        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
            </IDENTIFIERS>
          </DEFAULT_MEMBER>
          <MEMBER accession="ERS012247" member_name="5319_3#1">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012247</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="1">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012248" member_name="5319_3#2">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012248</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="2">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012249" member_name="5319_3#3">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012249</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="3">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012253" member_name="5319_3#4">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012253</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="4">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012254" member_name="5319_3#5">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012254</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="5">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012255" member_name="5319_3#6">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012255</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="6">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012244" member_name="5319_3#7">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012244</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="7">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012245" member_name="5319_3#8">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012245</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="8">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012246" member_name="5319_3#9">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012246</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="9">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012250" member_name="5319_3#10">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012250</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="10">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012251" member_name="5319_3#11">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012251</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="11">barcode_tag</READ_LABEL>
          </MEMBER>
          <MEMBER accession="ERS012252" member_name="5319_3#12">
            <IDENTIFIERS>
              <PRIMARY_ID>ERS012252</PRIMARY_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="12">barcode_tag</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>3kb_samples_group1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="1947" NOMINAL_SDEV="986"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Long range</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode_tag</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL>
              <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL>
              <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL>
              <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL>
              <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL>
              <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL>
              <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL>
              <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL>
              <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL>
              <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL>
              <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL>
              <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>117</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
