<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="cattle_reseq2011_300bp" center_name="AU-DJF" accession="ERX013625">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX013625</PRIMARY_ID>
      <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011_300bp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina Genome Analyzer II paired end sequencing</TITLE>
    <STUDY_REF refname="cattle_reseq2011" accession="ERP000712" refcenter="AU-DJF">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP000712</PRIMARY_ID>
        <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of a Holstein bull             300bp library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR refname="luke" accession="ERS035834" refcenter="AU-DJF">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS035834</PRIMARY_ID>
          <SUBMITTER_ID namespace="AU-DJF">luke</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>luke 300bp library</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="300" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>72</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>F</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>R</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>37</BASE_COORD>
            <!--The BASE_COORD is the coordinate for the read. For the                              second application read, this will be 1 + length of the                              first read. E.g., for 38+38 this is 39.-->
            <!--READ_LABEL can be used to reference separate forward and                              reverse files. Delete this tag if both Forward and Reverse                              reads occur in the same file (e.g., srf, sff etc).-->
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="cattle_reseq2011_500bp" center_name="AU-DJF" accession="ERX013626">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX013626</PRIMARY_ID>
      <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011_500bp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina Genome Analyzer II paired end sequencing</TITLE>
    <STUDY_REF refname="cattle_reseq2011" accession="ERP000712" refcenter="AU-DJF">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP000712</PRIMARY_ID>
        <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of a Holstein bull             300bp library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR refname="luke" accession="ERS035834" refcenter="AU-DJF">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS035834</PRIMARY_ID>
          <SUBMITTER_ID namespace="AU-DJF">luke</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>luke 500bp library</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>72</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>F</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>R</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>37</BASE_COORD>
            <!--The BASE_COORD is the coordinate for the read. For the                              second application read, this will be 1 + length of the                              first read. E.g., for 38+38 this is 39.-->
            <!--READ_LABEL can be used to reference separate forward and                              reverse files. Delete this tag if both Forward and Reverse                              reads occur in the same file (e.g., srf, sff etc).-->
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="cattle_reseq2011_500bp_IIx" center_name="AU-DJF" accession="ERX013627">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX013627</PRIMARY_ID>
      <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011_500bp_IIx</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina Genome Analyzer IIx paired end sequencing</TITLE>
    <STUDY_REF refname="cattle_reseq2011" accession="ERP000712" refcenter="AU-DJF">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP000712</PRIMARY_ID>
        <SUBMITTER_ID namespace="AU-DJF">cattle_reseq2011</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of a Holstein bull             300bp library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR refname="luke" accession="ERS035834" refcenter="AU-DJF">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS035834</PRIMARY_ID>
          <SUBMITTER_ID namespace="AU-DJF">luke</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>luke 500bp library</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>72</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>F</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>R</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>37</BASE_COORD>
            <!--The BASE_COORD is the coordinate for the read. For the                              second application read, this will be 1 + length of the                              first read. E.g., for 38+38 this is 39.-->
            <!--READ_LABEL can be used to reference separate forward and                              reverse files. Delete this tag if both Forward and Reverse                              reads occur in the same file (e.g., srf, sff etc).-->
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
