<STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556992, constructed from sample accession ERS031632 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031632" refname="IB5234-sc-2011-04-20T11:22:09Z-1126738" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031632</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5234-sc-2011-04-20T11:22:09Z-1126738</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556992</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#2" center_name="SC" accession="ERX016455"> <IDENTIFIERS> <PRIMARY_ID>ERX016455</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556995, constructed from sample accession ERS031633 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031633" refname="IB5236-sc-2011-04-20T11:22:10Z-1126739" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5236-sc-2011-04-20T11:22:10Z-1126739</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556995</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#3" center_name="SC" accession="ERX016456"> <IDENTIFIERS> <PRIMARY_ID>ERX016456</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556998, constructed from sample accession ERS031634 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031634" refname="IB5240-sc-2011-04-20T11:22:11Z-1126740" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031634</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5240-sc-2011-04-20T11:22:11Z-1126740</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556998</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#4" center_name="SC" accession="ERX016457"> <IDENTIFIERS> <PRIMARY_ID>ERX016457</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557000, constructed from sample accession ERS031635 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031635" refname="IB5241-sc-2011-04-20T11:22:12Z-1126741" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031635</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5241-sc-2011-04-20T11:22:12Z-1126741</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557000</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#5" center_name="SC" accession="ERX016458"> <IDENTIFIERS> <PRIMARY_ID>ERX016458</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557002, constructed from sample accession ERS031636 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031636" refname="IB5261-sc-2011-04-20T11:22:12Z-1126742" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031636</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5261-sc-2011-04-20T11:22:12Z-1126742</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557002</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#6" center_name="SC" accession="ERX016459"> <IDENTIFIERS> <PRIMARY_ID>ERX016459</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557004, constructed from sample accession ERS031637 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031637" refname="IB5275-sc-2011-04-20T11:22:13Z-1126743" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031637</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5275-sc-2011-04-20T11:22:13Z-1126743</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557004</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#7" center_name="SC" accession="ERX016460"> <IDENTIFIERS> <PRIMARY_ID>ERX016460</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557013, constructed from sample accession ERS031638 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031638" refname="IB5276-sc-2011-04-20T11:22:13Z-1126744" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031638</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5276-sc-2011-04-20T11:22:13Z-1126744</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557013</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#8" center_name="SC" accession="ERX016461"> <IDENTIFIERS> <PRIMARY_ID>ERX016461</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557016, constructed from sample accession ERS031639 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031639" refname="IB5277-sc-2011-04-20T11:22:14Z-1126745" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031639</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5277-sc-2011-04-20T11:22:14Z-1126745</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557016</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#9" center_name="SC" accession="ERX016462"> <IDENTIFIERS> <PRIMARY_ID>ERX016462</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557018, constructed from sample accession ERS031640 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031640" refname="IB5278-sc-2011-04-20T11:22:14Z-1126746" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031640</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5278-sc-2011-04-20T11:22:14Z-1126746</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557018</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#10" center_name="SC" accession="ERX016463"> <IDENTIFIERS> <PRIMARY_ID>ERX016463</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557020, constructed from sample accession ERS031641 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031641" refname="IB5279-sc-2011-04-20T11:22:15Z-1126747" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031641</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5279-sc-2011-04-20T11:22:15Z-1126747</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557020</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#11" center_name="SC" accession="ERX016464"> <IDENTIFIERS> <PRIMARY_ID>ERX016464</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557023, constructed from sample accession ERS031642 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031642" refname="IB5280-sc-2011-04-20T11:22:15Z-1126748" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031642</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5280-sc-2011-04-20T11:22:15Z-1126748</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557023</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#12" center_name="SC" accession="ERX016465"> <IDENTIFIERS> <PRIMARY_ID>ERX016465</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557025, constructed from sample accession ERS031643 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031643" refname="IB5281-sc-2011-04-20T11:22:16Z-1126749" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031643</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5281-sc-2011-04-20T11:22:16Z-1126749</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557025</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#13" center_name="SC" accession="ERX016466"> <IDENTIFIERS> <PRIMARY_ID>ERX016466</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557027, constructed from sample accession ERS031644 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031644" refname="IB5282-sc-2011-04-20T11:22:17Z-1126750" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031644</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5282-sc-2011-04-20T11:22:17Z-1126750</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557027</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#14" center_name="SC" accession="ERX016467"> <IDENTIFIERS> <PRIMARY_ID>ERX016467</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557032, constructed from sample accession ERS031645 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031645" refname="IB5283-sc-2011-04-20T11:22:18Z-1126751" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031645</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5283-sc-2011-04-20T11:22:18Z-1126751</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557032</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#15" center_name="SC" accession="ERX016468"> <IDENTIFIERS> <PRIMARY_ID>ERX016468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557033, constructed from sample accession ERS031646 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031646" refname="IB5284-sc-2011-04-20T11:22:19Z-1126752" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031646</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5284-sc-2011-04-20T11:22:19Z-1126752</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557033</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#16" center_name="SC" accession="ERX016469"> <IDENTIFIERS> <PRIMARY_ID>ERX016469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557034, constructed from sample accession ERS031647 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031647" refname="IB5285-sc-2011-04-20T11:22:20Z-1126753" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031647</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5285-sc-2011-04-20T11:22:20Z-1126753</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557034</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#17" center_name="SC" accession="ERX016470"> <IDENTIFIERS> <PRIMARY_ID>ERX016470</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557035, constructed from sample accession ERS031648 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031648" refname="IB5286-sc-2011-04-20T11:22:20Z-1126754" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031648</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5286-sc-2011-04-20T11:22:20Z-1126754</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557035</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#18" center_name="SC" accession="ERX016471"> <IDENTIFIERS> <PRIMARY_ID>ERX016471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557037, constructed from sample accession ERS031649 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031649" refname="IB5287-sc-2011-04-20T11:22:21Z-1126755" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031649</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5287-sc-2011-04-20T11:22:21Z-1126755</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557037</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#19" center_name="SC" accession="ERX016472"> <IDENTIFIERS> <PRIMARY_ID>ERX016472</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557039, constructed from sample accession ERS031650 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031650" refname="IB5288-sc-2011-04-20T11:22:21Z-1126756" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031650</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5288-sc-2011-04-20T11:22:21Z-1126756</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557039</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#20" center_name="SC" accession="ERX016473"> <IDENTIFIERS> <PRIMARY_ID>ERX016473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557052, constructed from sample accession ERS031651 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031651" refname="IB5289-sc-2011-04-20T11:22:22Z-1126757" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031651</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5289-sc-2011-04-20T11:22:22Z-1126757</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557052</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#21" center_name="SC" accession="ERX016474"> <IDENTIFIERS> <PRIMARY_ID>ERX016474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557054, constructed from sample accession ERS031652 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031652" refname="IB5290-sc-2011-04-20T11:22:22Z-1126758" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031652</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5290-sc-2011-04-20T11:22:22Z-1126758</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557054</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#22" center_name="SC" accession="ERX016475"> <IDENTIFIERS> <PRIMARY_ID>ERX016475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557057, constructed from sample accession ERS031653 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031653" refname="IB5291-sc-2011-04-20T11:22:23Z-1126759" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031653</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5291-sc-2011-04-20T11:22:23Z-1126759</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557057</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#1" center_name="SC" accession="ERX016476"> <IDENTIFIERS> <PRIMARY_ID>ERX016476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557148, constructed from sample accession ERS031654 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031654" refname="IB5292-sc-2011-04-20T11:22:23Z-1126760" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031654</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5292-sc-2011-04-20T11:22:23Z-1126760</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557148</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#2" center_name="SC" accession="ERX016477"> <IDENTIFIERS> <PRIMARY_ID>ERX016477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557149, constructed from sample accession ERS031655 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031655" refname="IB5293-sc-2011-04-20T11:22:24Z-1126761" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031655</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5293-sc-2011-04-20T11:22:24Z-1126761</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557149</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#3" center_name="SC" accession="ERX016478"> <IDENTIFIERS> <PRIMARY_ID>ERX016478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557150, constructed from sample accession ERS031656 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031656" refname="IB5294-sc-2011-04-20T11:22:24Z-1126762" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031656</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5294-sc-2011-04-20T11:22:24Z-1126762</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557150</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#4" center_name="SC" accession="ERX016479"> <IDENTIFIERS> <PRIMARY_ID>ERX016479</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557151, constructed from sample accession ERS031657 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031657" refname="IB5295-sc-2011-04-20T11:22:25Z-1126763" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031657</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5295-sc-2011-04-20T11:22:25Z-1126763</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557151</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#5" center_name="SC" accession="ERX016480"> <IDENTIFIERS> <PRIMARY_ID>ERX016480</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557152, constructed from sample accession ERS031658 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031658" refname="IB5296-sc-2011-04-20T11:22:25Z-1126764" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031658</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5296-sc-2011-04-20T11:22:25Z-1126764</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557152</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#6" center_name="SC" accession="ERX016481"> <IDENTIFIERS> <PRIMARY_ID>ERX016481</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557153, constructed from sample accession ERS031659 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031659" refname="IB5297-sc-2011-04-20T11:22:26Z-1126765" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031659</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5297-sc-2011-04-20T11:22:26Z-1126765</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#7" center_name="SC" accession="ERX016482"> <IDENTIFIERS> <PRIMARY_ID>ERX016482</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557154, constructed from sample accession ERS031660 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031660" refname="IB5298-sc-2011-04-20T11:22:26Z-1126766" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031660</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5298-sc-2011-04-20T11:22:26Z-1126766</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#8" center_name="SC" accession="ERX016483"> <IDENTIFIERS> <PRIMARY_ID>ERX016483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557155, constructed from sample accession ERS031661 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031661" refname="IB5299-sc-2011-04-20T11:22:27Z-1126767" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031661</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5299-sc-2011-04-20T11:22:27Z-1126767</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#9" center_name="SC" accession="ERX016484"> <IDENTIFIERS> <PRIMARY_ID>ERX016484</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557156, constructed from sample accession ERS031662 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031662" refname="IB5300-sc-2011-04-20T11:22:28Z-1126768" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031662</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5300-sc-2011-04-20T11:22:28Z-1126768</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#10" center_name="SC" accession="ERX016485"> <IDENTIFIERS> <PRIMARY_ID>ERX016485</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557157, constructed from sample accession ERS031663 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031663" refname="IB5301-sc-2011-04-20T11:22:29Z-1126769" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031663</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5301-sc-2011-04-20T11:22:29Z-1126769</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#11" center_name="SC" accession="ERX016486"> <IDENTIFIERS> <PRIMARY_ID>ERX016486</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557158, constructed from sample accession ERS031664 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031664" refname="IB5302-sc-2011-04-20T11:22:29Z-1126770" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031664</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5302-sc-2011-04-20T11:22:29Z-1126770</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#12" center_name="SC" accession="ERX016487"> <IDENTIFIERS> <PRIMARY_ID>ERX016487</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557159, constructed from sample accession ERS031665 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031665" refname="IB5303-sc-2011-04-20T11:22:30Z-1126771" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031665</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5303-sc-2011-04-20T11:22:30Z-1126771</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#13" center_name="SC" accession="ERX016488"> <IDENTIFIERS> <PRIMARY_ID>ERX016488</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557160, constructed from sample accession ERS031666 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031666" refname="IB5304-sc-2011-04-20T11:22:30Z-1126772" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031666</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5304-sc-2011-04-20T11:22:30Z-1126772</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#14" center_name="SC" accession="ERX016489"> <IDENTIFIERS> <PRIMARY_ID>ERX016489</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557161, constructed from sample accession ERS031667 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031667" refname="IB5305-sc-2011-04-20T11:22:31Z-1126773" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031667</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5305-sc-2011-04-20T11:22:31Z-1126773</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#15" center_name="SC" accession="ERX016490"> <IDENTIFIERS> <PRIMARY_ID>ERX016490</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557162, constructed from sample accession ERS031668 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031668" refname="IB5306-sc-2011-04-20T11:22:31Z-1126774" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031668</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5306-sc-2011-04-20T11:22:31Z-1126774</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#16" center_name="SC" accession="ERX016491"> <IDENTIFIERS> <PRIMARY_ID>ERX016491</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557163, constructed from sample accession ERS031669 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031669" refname="IB5307-sc-2011-04-20T11:22:32Z-1126775" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031669</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5307-sc-2011-04-20T11:22:32Z-1126775</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#17" center_name="SC" accession="ERX016492"> <IDENTIFIERS> <PRIMARY_ID>ERX016492</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557164, constructed from sample accession ERS031670 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031670" refname="IB5308-sc-2011-04-20T11:22:33Z-1126776" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031670</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5308-sc-2011-04-20T11:22:33Z-1126776</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#18" center_name="SC" accession="ERX016493"> <IDENTIFIERS> <PRIMARY_ID>ERX016493</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557165, constructed from sample accession ERS031671 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031671" refname="IB5309-sc-2011-04-20T11:22:33Z-1126777" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031671</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5309-sc-2011-04-20T11:22:33Z-1126777</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#19" center_name="SC" accession="ERX016494"> <IDENTIFIERS> <PRIMARY_ID>ERX016494</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557166, constructed from sample accession ERS031672 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031672" refname="IB5310-sc-2011-04-20T11:22:34Z-1126778" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031672</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5310-sc-2011-04-20T11:22:34Z-1126778</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#20" center_name="SC" accession="ERX016495"> <IDENTIFIERS> <PRIMARY_ID>ERX016495</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557167, constructed from sample accession ERS031673 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031673" refname="IB5311-sc-2011-04-20T11:22:35Z-1126779" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031673</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5311-sc-2011-04-20T11:22:35Z-1126779</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#21" center_name="SC" accession="ERX016496"> <IDENTIFIERS> <PRIMARY_ID>ERX016496</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557168, constructed from sample accession ERS031674 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031674" refname="IB5312-sc-2011-04-20T11:22:36Z-1126780" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031674</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5312-sc-2011-04-20T11:22:36Z-1126780</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#22" center_name="SC" accession="ERX016497"> <IDENTIFIERS> <PRIMARY_ID>ERX016497</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557169, constructed from sample accession ERS031675 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031675" refname="IB5313-sc-2011-04-20T11:22:36Z-1126781" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031675</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5313-sc-2011-04-20T11:22:36Z-1126781</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#1" center_name="SC" accession="ERX016498"> <IDENTIFIERS> <PRIMARY_ID>ERX016498</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561384, constructed from sample accession ERS031676 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031676" refname="IB5314-sc-2011-04-20T11:22:37Z-1126782" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031676</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5314-sc-2011-04-20T11:22:37Z-1126782</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#2" center_name="SC" accession="ERX016499"> <IDENTIFIERS> <PRIMARY_ID>ERX016499</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561385, constructed from sample accession ERS031677 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031677" refname="IB5315-sc-2011-04-20T11:22:37Z-1126783" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031677</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5315-sc-2011-04-20T11:22:37Z-1126783</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#3" center_name="SC" accession="ERX016500"> <IDENTIFIERS> <PRIMARY_ID>ERX016500</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561386, constructed from sample accession ERS031678 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031678" refname="IB5316-sc-2011-04-20T11:22:38Z-1126784" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031678</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5316-sc-2011-04-20T11:22:38Z-1126784</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#4" center_name="SC" accession="ERX016501"> <IDENTIFIERS> <PRIMARY_ID>ERX016501</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561387, constructed from sample accession ERS031679 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031679" refname="IB5317-sc-2011-04-20T11:22:39Z-1126785" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031679</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5317-sc-2011-04-20T11:22:39Z-1126785</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#5" center_name="SC" accession="ERX016502"> <IDENTIFIERS> <PRIMARY_ID>ERX016502</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561388, constructed from sample accession ERS031680 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031680" refname="IB5318-sc-2011-04-20T11:22:39Z-1126786" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031680</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5318-sc-2011-04-20T11:22:39Z-1126786</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#6" center_name="SC" accession="ERX016503"> <IDENTIFIERS> <PRIMARY_ID>ERX016503</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561389, constructed from sample accession ERS031681 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031681" refname="IB5319-sc-2011-04-20T11:22:40Z-1126787" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031681</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5319-sc-2011-04-20T11:22:40Z-1126787</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#7" center_name="SC" accession="ERX016504"> <IDENTIFIERS> <PRIMARY_ID>ERX016504</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561390, constructed from sample accession ERS031682 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031682" refname="IB5320-sc-2011-04-20T11:22:40Z-1126788" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031682</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5320-sc-2011-04-20T11:22:40Z-1126788</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#8" center_name="SC" accession="ERX016505"> <IDENTIFIERS> <PRIMARY_ID>ERX016505</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561391, constructed from sample accession ERS031683 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031683" refname="IB5321-sc-2011-04-20T11:22:41Z-1126789" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031683</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5321-sc-2011-04-20T11:22:41Z-1126789</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#9" center_name="SC" accession="ERX016506"> <IDENTIFIERS> <PRIMARY_ID>ERX016506</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561392, constructed from sample accession ERS031684 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031684" refname="IB5322-sc-2011-04-20T11:22:41Z-1126790" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031684</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5322-sc-2011-04-20T11:22:41Z-1126790</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#10" center_name="SC" accession="ERX016507"> <IDENTIFIERS> <PRIMARY_ID>ERX016507</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561393, constructed from sample accession ERS031685 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031685" refname="IB5323-sc-2011-04-20T11:22:42Z-1126791" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031685</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5323-sc-2011-04-20T11:22:42Z-1126791</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#11" center_name="SC" accession="ERX016508"> <IDENTIFIERS> <PRIMARY_ID>ERX016508</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561394, constructed from sample accession ERS031686 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031686" refname="IB5324-sc-2011-04-20T11:22:42Z-1126792" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031686</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5324-sc-2011-04-20T11:22:42Z-1126792</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#12" center_name="SC" accession="ERX016509"> <IDENTIFIERS> <PRIMARY_ID>ERX016509</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561395, constructed from sample accession ERS031687 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031687" refname="IB5325-sc-2011-04-20T11:22:43Z-1126793" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031687</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5325-sc-2011-04-20T11:22:43Z-1126793</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#13" center_name="SC" accession="ERX016510"> <IDENTIFIERS> <PRIMARY_ID>ERX016510</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561396, constructed from sample accession ERS031688 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031688" refname="IB5326-sc-2011-04-20T11:22:43Z-1126794" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031688</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5326-sc-2011-04-20T11:22:43Z-1126794</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#14" center_name="SC" accession="ERX016511"> <IDENTIFIERS> <PRIMARY_ID>ERX016511</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561397, constructed from sample accession ERS031689 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031689" refname="IB5327-sc-2011-04-20T11:22:44Z-1126795" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031689</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5327-sc-2011-04-20T11:22:44Z-1126795</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#15" center_name="SC" accession="ERX016512"> <IDENTIFIERS> <PRIMARY_ID>ERX016512</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561398, constructed from sample accession ERS031690 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031690" refname="IB5328-sc-2011-04-20T11:22:44Z-1126796" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031690</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5328-sc-2011-04-20T11:22:44Z-1126796</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#16" center_name="SC" accession="ERX016513"> <IDENTIFIERS> <PRIMARY_ID>ERX016513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561399, constructed from sample accession ERS031691 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031691" refname="IB5329-sc-2011-04-20T11:22:45Z-1126797" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031691</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5329-sc-2011-04-20T11:22:45Z-1126797</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#17" center_name="SC" accession="ERX016514"> <IDENTIFIERS> <PRIMARY_ID>ERX016514</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561400, constructed from sample accession ERS031692 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031692" refname="IB5330-sc-2011-04-20T11:22:45Z-1126798" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031692</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5330-sc-2011-04-20T11:22:45Z-1126798</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#18" center_name="SC" accession="ERX016515"> <IDENTIFIERS> <PRIMARY_ID>ERX016515</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561401, constructed from sample accession ERS031693 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031693" refname="IB5331-sc-2011-04-20T11:22:47Z-1126799" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031693</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5331-sc-2011-04-20T11:22:47Z-1126799</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#19" center_name="SC" accession="ERX016516"> <IDENTIFIERS> <PRIMARY_ID>ERX016516</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561402, constructed from sample accession ERS031694 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031694" refname="IB5332-sc-2011-04-20T11:22:48Z-1126800" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031694</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5332-sc-2011-04-20T11:22:48Z-1126800</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#20" center_name="SC" accession="ERX016517"> <IDENTIFIERS> <PRIMARY_ID>ERX016517</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561403, constructed from sample accession ERS031695 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031695" refname="IB5333-sc-2011-04-20T11:22:48Z-1126801" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031695</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5333-sc-2011-04-20T11:22:48Z-1126801</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#21" center_name="SC" accession="ERX016518"> <IDENTIFIERS> <PRIMARY_ID>ERX016518</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561404, constructed from sample accession ERS031696 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031696" refname="IB5334-sc-2011-04-20T11:22:49Z-1126802" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031696</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5334-sc-2011-04-20T11:22:49Z-1126802</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561404</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT

ERX016454 SC_EXP_6237_5#1 <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556992, constructed from sample accession ERS031632 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031632" refname="IB5234-sc-2011-04-20T11:22:09Z-1126738" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031632</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5234-sc-2011-04-20T11:22:09Z-1126738</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556992</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#2" center_name="SC" accession="ERX016455"> <IDENTIFIERS> <PRIMARY_ID>ERX016455</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556995, constructed from sample accession ERS031633 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031633" refname="IB5236-sc-2011-04-20T11:22:10Z-1126739" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5236-sc-2011-04-20T11:22:10Z-1126739</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556995</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#3" center_name="SC" accession="ERX016456"> <IDENTIFIERS> <PRIMARY_ID>ERX016456</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2556998, constructed from sample accession ERS031634 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031634" refname="IB5240-sc-2011-04-20T11:22:11Z-1126740" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031634</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5240-sc-2011-04-20T11:22:11Z-1126740</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2556998</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#4" center_name="SC" accession="ERX016457"> <IDENTIFIERS> <PRIMARY_ID>ERX016457</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557000, constructed from sample accession ERS031635 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031635" refname="IB5241-sc-2011-04-20T11:22:12Z-1126741" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031635</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5241-sc-2011-04-20T11:22:12Z-1126741</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557000</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#5" center_name="SC" accession="ERX016458"> <IDENTIFIERS> <PRIMARY_ID>ERX016458</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557002, constructed from sample accession ERS031636 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031636" refname="IB5261-sc-2011-04-20T11:22:12Z-1126742" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031636</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5261-sc-2011-04-20T11:22:12Z-1126742</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557002</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#6" center_name="SC" accession="ERX016459"> <IDENTIFIERS> <PRIMARY_ID>ERX016459</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557004, constructed from sample accession ERS031637 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031637" refname="IB5275-sc-2011-04-20T11:22:13Z-1126743" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031637</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5275-sc-2011-04-20T11:22:13Z-1126743</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557004</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#7" center_name="SC" accession="ERX016460"> <IDENTIFIERS> <PRIMARY_ID>ERX016460</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557013, constructed from sample accession ERS031638 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031638" refname="IB5276-sc-2011-04-20T11:22:13Z-1126744" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031638</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5276-sc-2011-04-20T11:22:13Z-1126744</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557013</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#8" center_name="SC" accession="ERX016461"> <IDENTIFIERS> <PRIMARY_ID>ERX016461</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557016, constructed from sample accession ERS031639 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031639" refname="IB5277-sc-2011-04-20T11:22:14Z-1126745" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031639</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5277-sc-2011-04-20T11:22:14Z-1126745</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557016</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#9" center_name="SC" accession="ERX016462"> <IDENTIFIERS> <PRIMARY_ID>ERX016462</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557018, constructed from sample accession ERS031640 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031640" refname="IB5278-sc-2011-04-20T11:22:14Z-1126746" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031640</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5278-sc-2011-04-20T11:22:14Z-1126746</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557018</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#10" center_name="SC" accession="ERX016463"> <IDENTIFIERS> <PRIMARY_ID>ERX016463</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557020, constructed from sample accession ERS031641 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031641" refname="IB5279-sc-2011-04-20T11:22:15Z-1126747" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031641</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5279-sc-2011-04-20T11:22:15Z-1126747</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557020</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#11" center_name="SC" accession="ERX016464"> <IDENTIFIERS> <PRIMARY_ID>ERX016464</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557023, constructed from sample accession ERS031642 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031642" refname="IB5280-sc-2011-04-20T11:22:15Z-1126748" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031642</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5280-sc-2011-04-20T11:22:15Z-1126748</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557023</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#12" center_name="SC" accession="ERX016465"> <IDENTIFIERS> <PRIMARY_ID>ERX016465</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557025, constructed from sample accession ERS031643 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031643" refname="IB5281-sc-2011-04-20T11:22:16Z-1126749" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031643</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5281-sc-2011-04-20T11:22:16Z-1126749</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557025</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#13" center_name="SC" accession="ERX016466"> <IDENTIFIERS> <PRIMARY_ID>ERX016466</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557027, constructed from sample accession ERS031644 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031644" refname="IB5282-sc-2011-04-20T11:22:17Z-1126750" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031644</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5282-sc-2011-04-20T11:22:17Z-1126750</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557027</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#14" center_name="SC" accession="ERX016467"> <IDENTIFIERS> <PRIMARY_ID>ERX016467</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557032, constructed from sample accession ERS031645 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031645" refname="IB5283-sc-2011-04-20T11:22:18Z-1126751" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031645</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5283-sc-2011-04-20T11:22:18Z-1126751</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557032</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#15" center_name="SC" accession="ERX016468"> <IDENTIFIERS> <PRIMARY_ID>ERX016468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557033, constructed from sample accession ERS031646 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031646" refname="IB5284-sc-2011-04-20T11:22:19Z-1126752" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031646</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5284-sc-2011-04-20T11:22:19Z-1126752</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557033</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#16" center_name="SC" accession="ERX016469"> <IDENTIFIERS> <PRIMARY_ID>ERX016469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557034, constructed from sample accession ERS031647 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031647" refname="IB5285-sc-2011-04-20T11:22:20Z-1126753" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031647</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5285-sc-2011-04-20T11:22:20Z-1126753</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557034</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#17" center_name="SC" accession="ERX016470"> <IDENTIFIERS> <PRIMARY_ID>ERX016470</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557035, constructed from sample accession ERS031648 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031648" refname="IB5286-sc-2011-04-20T11:22:20Z-1126754" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031648</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5286-sc-2011-04-20T11:22:20Z-1126754</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557035</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#18" center_name="SC" accession="ERX016471"> <IDENTIFIERS> <PRIMARY_ID>ERX016471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557037, constructed from sample accession ERS031649 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031649" refname="IB5287-sc-2011-04-20T11:22:21Z-1126755" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031649</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5287-sc-2011-04-20T11:22:21Z-1126755</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557037</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#19" center_name="SC" accession="ERX016472"> <IDENTIFIERS> <PRIMARY_ID>ERX016472</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557039, constructed from sample accession ERS031650 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031650" refname="IB5288-sc-2011-04-20T11:22:21Z-1126756" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031650</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5288-sc-2011-04-20T11:22:21Z-1126756</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557039</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#20" center_name="SC" accession="ERX016473"> <IDENTIFIERS> <PRIMARY_ID>ERX016473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557052, constructed from sample accession ERS031651 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031651" refname="IB5289-sc-2011-04-20T11:22:22Z-1126757" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031651</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5289-sc-2011-04-20T11:22:22Z-1126757</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557052</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#21" center_name="SC" accession="ERX016474"> <IDENTIFIERS> <PRIMARY_ID>ERX016474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557054, constructed from sample accession ERS031652 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031652" refname="IB5290-sc-2011-04-20T11:22:22Z-1126758" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031652</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5290-sc-2011-04-20T11:22:22Z-1126758</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557054</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_5#22" center_name="SC" accession="ERX016475"> <IDENTIFIERS> <PRIMARY_ID>ERX016475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557057, constructed from sample accession ERS031653 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031653" refname="IB5291-sc-2011-04-20T11:22:23Z-1126759" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031653</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5291-sc-2011-04-20T11:22:23Z-1126759</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557057</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#1" center_name="SC" accession="ERX016476"> <IDENTIFIERS> <PRIMARY_ID>ERX016476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557148, constructed from sample accession ERS031654 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031654" refname="IB5292-sc-2011-04-20T11:22:23Z-1126760" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031654</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5292-sc-2011-04-20T11:22:23Z-1126760</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557148</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#2" center_name="SC" accession="ERX016477"> <IDENTIFIERS> <PRIMARY_ID>ERX016477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557149, constructed from sample accession ERS031655 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031655" refname="IB5293-sc-2011-04-20T11:22:24Z-1126761" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031655</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5293-sc-2011-04-20T11:22:24Z-1126761</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557149</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#3" center_name="SC" accession="ERX016478"> <IDENTIFIERS> <PRIMARY_ID>ERX016478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557150, constructed from sample accession ERS031656 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031656" refname="IB5294-sc-2011-04-20T11:22:24Z-1126762" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031656</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5294-sc-2011-04-20T11:22:24Z-1126762</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557150</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#4" center_name="SC" accession="ERX016479"> <IDENTIFIERS> <PRIMARY_ID>ERX016479</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557151, constructed from sample accession ERS031657 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031657" refname="IB5295-sc-2011-04-20T11:22:25Z-1126763" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031657</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5295-sc-2011-04-20T11:22:25Z-1126763</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557151</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#5" center_name="SC" accession="ERX016480"> <IDENTIFIERS> <PRIMARY_ID>ERX016480</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557152, constructed from sample accession ERS031658 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031658" refname="IB5296-sc-2011-04-20T11:22:25Z-1126764" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031658</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5296-sc-2011-04-20T11:22:25Z-1126764</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557152</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#6" center_name="SC" accession="ERX016481"> <IDENTIFIERS> <PRIMARY_ID>ERX016481</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557153, constructed from sample accession ERS031659 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031659" refname="IB5297-sc-2011-04-20T11:22:26Z-1126765" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031659</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5297-sc-2011-04-20T11:22:26Z-1126765</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#7" center_name="SC" accession="ERX016482"> <IDENTIFIERS> <PRIMARY_ID>ERX016482</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557154, constructed from sample accession ERS031660 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031660" refname="IB5298-sc-2011-04-20T11:22:26Z-1126766" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031660</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5298-sc-2011-04-20T11:22:26Z-1126766</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#8" center_name="SC" accession="ERX016483"> <IDENTIFIERS> <PRIMARY_ID>ERX016483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557155, constructed from sample accession ERS031661 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031661" refname="IB5299-sc-2011-04-20T11:22:27Z-1126767" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031661</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5299-sc-2011-04-20T11:22:27Z-1126767</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#9" center_name="SC" accession="ERX016484"> <IDENTIFIERS> <PRIMARY_ID>ERX016484</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557156, constructed from sample accession ERS031662 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031662" refname="IB5300-sc-2011-04-20T11:22:28Z-1126768" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031662</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5300-sc-2011-04-20T11:22:28Z-1126768</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#10" center_name="SC" accession="ERX016485"> <IDENTIFIERS> <PRIMARY_ID>ERX016485</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557157, constructed from sample accession ERS031663 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031663" refname="IB5301-sc-2011-04-20T11:22:29Z-1126769" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031663</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5301-sc-2011-04-20T11:22:29Z-1126769</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#11" center_name="SC" accession="ERX016486"> <IDENTIFIERS> <PRIMARY_ID>ERX016486</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557158, constructed from sample accession ERS031664 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031664" refname="IB5302-sc-2011-04-20T11:22:29Z-1126770" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031664</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5302-sc-2011-04-20T11:22:29Z-1126770</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#12" center_name="SC" accession="ERX016487"> <IDENTIFIERS> <PRIMARY_ID>ERX016487</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557159, constructed from sample accession ERS031665 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031665" refname="IB5303-sc-2011-04-20T11:22:30Z-1126771" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031665</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5303-sc-2011-04-20T11:22:30Z-1126771</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#13" center_name="SC" accession="ERX016488"> <IDENTIFIERS> <PRIMARY_ID>ERX016488</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557160, constructed from sample accession ERS031666 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031666" refname="IB5304-sc-2011-04-20T11:22:30Z-1126772" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031666</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5304-sc-2011-04-20T11:22:30Z-1126772</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#14" center_name="SC" accession="ERX016489"> <IDENTIFIERS> <PRIMARY_ID>ERX016489</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557161, constructed from sample accession ERS031667 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031667" refname="IB5305-sc-2011-04-20T11:22:31Z-1126773" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031667</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5305-sc-2011-04-20T11:22:31Z-1126773</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#15" center_name="SC" accession="ERX016490"> <IDENTIFIERS> <PRIMARY_ID>ERX016490</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557162, constructed from sample accession ERS031668 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031668" refname="IB5306-sc-2011-04-20T11:22:31Z-1126774" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031668</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5306-sc-2011-04-20T11:22:31Z-1126774</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#16" center_name="SC" accession="ERX016491"> <IDENTIFIERS> <PRIMARY_ID>ERX016491</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557163, constructed from sample accession ERS031669 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031669" refname="IB5307-sc-2011-04-20T11:22:32Z-1126775" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031669</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5307-sc-2011-04-20T11:22:32Z-1126775</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#17" center_name="SC" accession="ERX016492"> <IDENTIFIERS> <PRIMARY_ID>ERX016492</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557164, constructed from sample accession ERS031670 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031670" refname="IB5308-sc-2011-04-20T11:22:33Z-1126776" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031670</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5308-sc-2011-04-20T11:22:33Z-1126776</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#18" center_name="SC" accession="ERX016493"> <IDENTIFIERS> <PRIMARY_ID>ERX016493</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557165, constructed from sample accession ERS031671 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031671" refname="IB5309-sc-2011-04-20T11:22:33Z-1126777" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031671</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5309-sc-2011-04-20T11:22:33Z-1126777</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#19" center_name="SC" accession="ERX016494"> <IDENTIFIERS> <PRIMARY_ID>ERX016494</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557166, constructed from sample accession ERS031672 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031672" refname="IB5310-sc-2011-04-20T11:22:34Z-1126778" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031672</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5310-sc-2011-04-20T11:22:34Z-1126778</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#20" center_name="SC" accession="ERX016495"> <IDENTIFIERS> <PRIMARY_ID>ERX016495</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557167, constructed from sample accession ERS031673 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031673" refname="IB5311-sc-2011-04-20T11:22:35Z-1126779" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031673</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5311-sc-2011-04-20T11:22:35Z-1126779</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#21" center_name="SC" accession="ERX016496"> <IDENTIFIERS> <PRIMARY_ID>ERX016496</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557168, constructed from sample accession ERS031674 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031674" refname="IB5312-sc-2011-04-20T11:22:36Z-1126780" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031674</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5312-sc-2011-04-20T11:22:36Z-1126780</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_6#22" center_name="SC" accession="ERX016497"> <IDENTIFIERS> <PRIMARY_ID>ERX016497</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2557169, constructed from sample accession ERS031675 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031675" refname="IB5313-sc-2011-04-20T11:22:36Z-1126781" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031675</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5313-sc-2011-04-20T11:22:36Z-1126781</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2557169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="83"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#1" center_name="SC" accession="ERX016498"> <IDENTIFIERS> <PRIMARY_ID>ERX016498</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561384, constructed from sample accession ERS031676 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031676" refname="IB5314-sc-2011-04-20T11:22:37Z-1126782" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031676</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5314-sc-2011-04-20T11:22:37Z-1126782</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#2" center_name="SC" accession="ERX016499"> <IDENTIFIERS> <PRIMARY_ID>ERX016499</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561385, constructed from sample accession ERS031677 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031677" refname="IB5315-sc-2011-04-20T11:22:37Z-1126783" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031677</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5315-sc-2011-04-20T11:22:37Z-1126783</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#3" center_name="SC" accession="ERX016500"> <IDENTIFIERS> <PRIMARY_ID>ERX016500</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561386, constructed from sample accession ERS031678 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031678" refname="IB5316-sc-2011-04-20T11:22:38Z-1126784" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031678</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5316-sc-2011-04-20T11:22:38Z-1126784</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#4" center_name="SC" accession="ERX016501"> <IDENTIFIERS> <PRIMARY_ID>ERX016501</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561387, constructed from sample accession ERS031679 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031679" refname="IB5317-sc-2011-04-20T11:22:39Z-1126785" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031679</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5317-sc-2011-04-20T11:22:39Z-1126785</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#5" center_name="SC" accession="ERX016502"> <IDENTIFIERS> <PRIMARY_ID>ERX016502</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561388, constructed from sample accession ERS031680 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031680" refname="IB5318-sc-2011-04-20T11:22:39Z-1126786" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031680</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5318-sc-2011-04-20T11:22:39Z-1126786</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#6" center_name="SC" accession="ERX016503"> <IDENTIFIERS> <PRIMARY_ID>ERX016503</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561389, constructed from sample accession ERS031681 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031681" refname="IB5319-sc-2011-04-20T11:22:40Z-1126787" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031681</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5319-sc-2011-04-20T11:22:40Z-1126787</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#7" center_name="SC" accession="ERX016504"> <IDENTIFIERS> <PRIMARY_ID>ERX016504</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561390, constructed from sample accession ERS031682 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031682" refname="IB5320-sc-2011-04-20T11:22:40Z-1126788" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031682</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5320-sc-2011-04-20T11:22:40Z-1126788</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#8" center_name="SC" accession="ERX016505"> <IDENTIFIERS> <PRIMARY_ID>ERX016505</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561391, constructed from sample accession ERS031683 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031683" refname="IB5321-sc-2011-04-20T11:22:41Z-1126789" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031683</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5321-sc-2011-04-20T11:22:41Z-1126789</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#9" center_name="SC" accession="ERX016506"> <IDENTIFIERS> <PRIMARY_ID>ERX016506</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561392, constructed from sample accession ERS031684 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031684" refname="IB5322-sc-2011-04-20T11:22:41Z-1126790" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031684</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5322-sc-2011-04-20T11:22:41Z-1126790</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#10" center_name="SC" accession="ERX016507"> <IDENTIFIERS> <PRIMARY_ID>ERX016507</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561393, constructed from sample accession ERS031685 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031685" refname="IB5323-sc-2011-04-20T11:22:42Z-1126791" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031685</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5323-sc-2011-04-20T11:22:42Z-1126791</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#11" center_name="SC" accession="ERX016508"> <IDENTIFIERS> <PRIMARY_ID>ERX016508</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561394, constructed from sample accession ERS031686 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031686" refname="IB5324-sc-2011-04-20T11:22:42Z-1126792" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031686</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5324-sc-2011-04-20T11:22:42Z-1126792</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#12" center_name="SC" accession="ERX016509"> <IDENTIFIERS> <PRIMARY_ID>ERX016509</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561395, constructed from sample accession ERS031687 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031687" refname="IB5325-sc-2011-04-20T11:22:43Z-1126793" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031687</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5325-sc-2011-04-20T11:22:43Z-1126793</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#13" center_name="SC" accession="ERX016510"> <IDENTIFIERS> <PRIMARY_ID>ERX016510</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561396, constructed from sample accession ERS031688 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031688" refname="IB5326-sc-2011-04-20T11:22:43Z-1126794" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031688</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5326-sc-2011-04-20T11:22:43Z-1126794</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#14" center_name="SC" accession="ERX016511"> <IDENTIFIERS> <PRIMARY_ID>ERX016511</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561397, constructed from sample accession ERS031689 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031689" refname="IB5327-sc-2011-04-20T11:22:44Z-1126795" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031689</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5327-sc-2011-04-20T11:22:44Z-1126795</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#15" center_name="SC" accession="ERX016512"> <IDENTIFIERS> <PRIMARY_ID>ERX016512</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561398, constructed from sample accession ERS031690 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031690" refname="IB5328-sc-2011-04-20T11:22:44Z-1126796" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031690</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5328-sc-2011-04-20T11:22:44Z-1126796</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#16" center_name="SC" accession="ERX016513"> <IDENTIFIERS> <PRIMARY_ID>ERX016513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561399, constructed from sample accession ERS031691 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031691" refname="IB5329-sc-2011-04-20T11:22:45Z-1126797" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031691</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5329-sc-2011-04-20T11:22:45Z-1126797</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#17" center_name="SC" accession="ERX016514"> <IDENTIFIERS> <PRIMARY_ID>ERX016514</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561400, constructed from sample accession ERS031692 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031692" refname="IB5330-sc-2011-04-20T11:22:45Z-1126798" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031692</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5330-sc-2011-04-20T11:22:45Z-1126798</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#18" center_name="SC" accession="ERX016515"> <IDENTIFIERS> <PRIMARY_ID>ERX016515</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561401, constructed from sample accession ERS031693 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031693" refname="IB5331-sc-2011-04-20T11:22:47Z-1126799" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031693</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5331-sc-2011-04-20T11:22:47Z-1126799</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#19" center_name="SC" accession="ERX016516"> <IDENTIFIERS> <PRIMARY_ID>ERX016516</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561402, constructed from sample accession ERS031694 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031694" refname="IB5332-sc-2011-04-20T11:22:48Z-1126800" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031694</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5332-sc-2011-04-20T11:22:48Z-1126800</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#20" center_name="SC" accession="ERX016517"> <IDENTIFIERS> <PRIMARY_ID>ERX016517</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561403, constructed from sample accession ERS031695 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031695" refname="IB5333-sc-2011-04-20T11:22:48Z-1126801" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031695</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5333-sc-2011-04-20T11:22:48Z-1126801</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6237_7#21" center_name="SC" accession="ERX016518"> <IDENTIFIERS> <PRIMARY_ID>ERX016518</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6237_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000270" refname="Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Investigating the diversity of Vibrio cholerae isolates.-sc-2010-07-20</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2561404, constructed from sample accession ERS031696 for study accession ERP000270. This is part of an Illumina multiplexed sequencing run (6237_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031696" refname="IB5334-sc-2011-04-20T11:22:49Z-1126802" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031696</PRIMARY_ID> <SUBMITTER_ID namespace="SC">IB5334-sc-2011-04-20T11:22:49Z-1126802</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2561404</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="201" NOMINAL_SDEV="82"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>