ERX016677 E-MTAB-744:Cseq29 ERP000793 E-MTAB-744 Chromatin profiling by ChIP-seq ERS042908 E-MTAB-744:Cseq29 Cseq29 WGS GENOMIC RANDOM MCF10A cells were cultured with DMEM/F12 media supplemented with 2.5% Horse serum, 0.5ug/mL hydrocortisone, 10ug/mL Insulin, 20ng/mL EGF and 100ng/mL cholera toxin. IMR90 cells were cultured in MEM with Earles salts with 10% FBS. We have followed the ChIP protocol previously published in Kim, T.H. et al. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128, 17382889 (2007). The ChIP DNA was further processed by the Yale Center for Genomic Analysis following the instructions from Illumina, Inc. 35 bases were sequenced. 35 0 Application Read Forward 1 Illumina Genome Analyzer Experimental Factor: CELL_LINE MCF 10A Experimental Factor: CELL_TYPE epithelial ERX016678 E-MTAB-744:Cseq31 ERP000793 E-MTAB-744 Chromatin profiling by ChIP-seq ERS042909 E-MTAB-744:Cseq31 Cseq31 WGS GENOMIC RANDOM MCF10A cells were cultured with DMEM/F12 media supplemented with 2.5% Horse serum, 0.5ug/mL hydrocortisone, 10ug/mL Insulin, 20ng/mL EGF and 100ng/mL cholera toxin. IMR90 cells were cultured in MEM with Earles salts with 10% FBS. We have followed the ChIP protocol previously published in Kim, T.H. et al. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128, 17382889 (2007). The ChIP DNA was further processed by the Yale Center for Genomic Analysis following the instructions from Illumina, Inc. 35 bases were sequenced. 35 0 Application Read Forward 1 Illumina Genome Analyzer Experimental Factor: CELL_LINE MCF 10A Experimental Factor: CELL_TYPE epithelial ERX016679 E-MTAB-744:Cseq30 ERP000793 E-MTAB-744 Chromatin profiling by ChIP-seq ERS042910 E-MTAB-744:Cseq30 Cseq30 WGS GENOMIC RANDOM MCF10A cells were cultured with DMEM/F12 media supplemented with 2.5% Horse serum, 0.5ug/mL hydrocortisone, 10ug/mL Insulin, 20ng/mL EGF and 100ng/mL cholera toxin. IMR90 cells were cultured in MEM with Earles salts with 10% FBS. We have followed the ChIP protocol previously published in Kim, T.H. et al. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128, 17382889 (2007). The ChIP DNA was further processed by the Yale Center for Genomic Analysis following the instructions from Illumina, Inc. 35 bases were sequenced. 35 0 Application Read Forward 1 Illumina Genome Analyzer Experimental Factor: CELL_LINE IMR-90 Experimental Factor: CELL_TYPE fibroblast