ERX022083 SC_EXP_6472_5#22 <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732346, constructed from sample accession ERS023124 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023124" refname="UoS2034-sc-2011-02-14-1078178" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023124</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2034-sc-2011-02-14-1078178</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732346</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#23" center_name="SC" accession="ERX022084"> <IDENTIFIERS> <PRIMARY_ID>ERX022084</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732347, constructed from sample accession ERS023125 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023125" refname="UoS2037-sc-2011-02-14-1078179" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023125</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2037-sc-2011-02-14-1078179</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732347</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#24" center_name="SC" accession="ERX022085"> <IDENTIFIERS> <PRIMARY_ID>ERX022085</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732348, constructed from sample accession ERS023126 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023126" refname="UoS2038-sc-2011-02-14-1078180" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023126</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2038-sc-2011-02-14-1078180</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732348</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#1" center_name="SC" accession="ERX022086"> <IDENTIFIERS> <PRIMARY_ID>ERX022086</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732349, constructed from sample accession ERS023127 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023127" refname="UoS2041-sc-2011-02-14-1078181" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023127</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2041-sc-2011-02-14-1078181</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732349</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#2" center_name="SC" accession="ERX022087"> <IDENTIFIERS> <PRIMARY_ID>ERX022087</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732350, constructed from sample accession ERS023128 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023128" refname="UoS2050-sc-2011-02-14-1078182" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023128</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2050-sc-2011-02-14-1078182</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732350</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#3" center_name="SC" accession="ERX022088"> <IDENTIFIERS> <PRIMARY_ID>ERX022088</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732351, constructed from sample accession ERS023129 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023129" refname="UoS2051-sc-2011-02-14-1078183" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023129</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2051-sc-2011-02-14-1078183</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732351</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#4" center_name="SC" accession="ERX022089"> <IDENTIFIERS> <PRIMARY_ID>ERX022089</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732352, constructed from sample accession ERS023130 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023130" refname="UoS2052-sc-2011-02-14-1078184" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023130</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2052-sc-2011-02-14-1078184</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732352</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#5" center_name="SC" accession="ERX022090"> <IDENTIFIERS> <PRIMARY_ID>ERX022090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732353, constructed from sample accession ERS023131 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023131" refname="UoS2054-sc-2011-02-14-1078185" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023131</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2054-sc-2011-02-14-1078185</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732353</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#6" center_name="SC" accession="ERX022091"> <IDENTIFIERS> <PRIMARY_ID>ERX022091</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732354, constructed from sample accession ERS023132 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023132" refname="UoS2055-sc-2011-02-14-1078186" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023132</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2055-sc-2011-02-14-1078186</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732354</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#7" center_name="SC" accession="ERX022092"> <IDENTIFIERS> <PRIMARY_ID>ERX022092</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732355, constructed from sample accession ERS023133 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023133" refname="UoS2058-sc-2011-02-14-1078187" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023133</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2058-sc-2011-02-14-1078187</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732355</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#8" center_name="SC" accession="ERX022093"> <IDENTIFIERS> <PRIMARY_ID>ERX022093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732356, constructed from sample accession ERS023134 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023134" refname="UoS2060-sc-2011-02-14-1078188" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023134</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2060-sc-2011-02-14-1078188</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732356</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#9" center_name="SC" accession="ERX022094"> <IDENTIFIERS> <PRIMARY_ID>ERX022094</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732357, constructed from sample accession ERS023135 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023135" refname="UoS2063-sc-2011-02-14-1078189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023135</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2063-sc-2011-02-14-1078189</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732357</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#10" center_name="SC" accession="ERX022095"> <IDENTIFIERS> <PRIMARY_ID>ERX022095</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732358, constructed from sample accession ERS023136 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023136" refname="UoS2067-sc-2011-02-14-1078190" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023136</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2067-sc-2011-02-14-1078190</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732358</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#11" center_name="SC" accession="ERX022096"> <IDENTIFIERS> <PRIMARY_ID>ERX022096</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732359, constructed from sample accession ERS023137 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023137" refname="UoS2070-sc-2011-02-14-1078191" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023137</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2070-sc-2011-02-14-1078191</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732359</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#12" center_name="SC" accession="ERX022097"> <IDENTIFIERS> <PRIMARY_ID>ERX022097</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732360, constructed from sample accession ERS023138 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023138" refname="UoS2073-sc-2011-02-14-1078192" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023138</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2073-sc-2011-02-14-1078192</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732360</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#13" center_name="SC" accession="ERX022098"> <IDENTIFIERS> <PRIMARY_ID>ERX022098</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732361, constructed from sample accession ERS023139 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023139" refname="UoS2074-sc-2011-02-14-1078193" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023139</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2074-sc-2011-02-14-1078193</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732361</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#14" center_name="SC" accession="ERX022099"> <IDENTIFIERS> <PRIMARY_ID>ERX022099</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732362, constructed from sample accession ERS023140 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023140" refname="UoS2076-sc-2011-02-14-1078194" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2076-sc-2011-02-14-1078194</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732362</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#15" center_name="SC" accession="ERX022100"> <IDENTIFIERS> <PRIMARY_ID>ERX022100</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732363, constructed from sample accession ERS023141 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023141" refname="UoS2082-sc-2011-02-14-1078195" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023141</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2082-sc-2011-02-14-1078195</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732363</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#16" center_name="SC" accession="ERX022101"> <IDENTIFIERS> <PRIMARY_ID>ERX022101</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732364, constructed from sample accession ERS023142 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023142" refname="UoS2090-sc-2011-02-14-1078196" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023142</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2090-sc-2011-02-14-1078196</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732364</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#17" center_name="SC" accession="ERX022102"> <IDENTIFIERS> <PRIMARY_ID>ERX022102</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732365, constructed from sample accession ERS023143 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023143" refname="UoS2092-sc-2011-02-14-1078197" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023143</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2092-sc-2011-02-14-1078197</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732365</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#18" center_name="SC" accession="ERX022103"> <IDENTIFIERS> <PRIMARY_ID>ERX022103</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732366, constructed from sample accession ERS023144 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023144" refname="UoS2105-sc-2011-02-14-1078198" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023144</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2105-sc-2011-02-14-1078198</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732366</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#19" center_name="SC" accession="ERX022104"> <IDENTIFIERS> <PRIMARY_ID>ERX022104</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732367, constructed from sample accession ERS023145 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023145" refname="UoS2122-sc-2011-02-14-1078199" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023145</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2122-sc-2011-02-14-1078199</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732367</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#20" center_name="SC" accession="ERX022105"> <IDENTIFIERS> <PRIMARY_ID>ERX022105</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732368, constructed from sample accession ERS023146 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023146" refname="UoS2130-sc-2011-02-14-1078200" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023146</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2130-sc-2011-02-14-1078200</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732368</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#21" center_name="SC" accession="ERX022106"> <IDENTIFIERS> <PRIMARY_ID>ERX022106</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732369, constructed from sample accession ERS023147 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023147" refname="UoS2131-sc-2011-02-14-1078201" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023147</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2131-sc-2011-02-14-1078201</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732369</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#22" center_name="SC" accession="ERX022107"> <IDENTIFIERS> <PRIMARY_ID>ERX022107</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732370, constructed from sample accession ERS023148 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023148" refname="UoS2134-sc-2011-02-14-1078202" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023148</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2134-sc-2011-02-14-1078202</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732370</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#23" center_name="SC" accession="ERX022108"> <IDENTIFIERS> <PRIMARY_ID>ERX022108</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732371, constructed from sample accession ERS023149 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023149" refname="UoS2142-sc-2011-02-14-1078203" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023149</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2142-sc-2011-02-14-1078203</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732371</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_6#24" center_name="SC" accession="ERX022109"> <IDENTIFIERS> <PRIMARY_ID>ERX022109</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_6#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732372, constructed from sample accession ERS023150 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_6). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023150" refname="UoS2146-sc-2011-02-14-1078204" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023150</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2146-sc-2011-02-14-1078204</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732372</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="244" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#1" center_name="SC" accession="ERX022110"> <IDENTIFIERS> <PRIMARY_ID>ERX022110</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732373, constructed from sample accession ERS023151 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023151" refname="UoS2149-sc-2011-02-14-1078205" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023151</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2149-sc-2011-02-14-1078205</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732373</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#2" center_name="SC" accession="ERX022111"> <IDENTIFIERS> <PRIMARY_ID>ERX022111</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732374, constructed from sample accession ERS023152 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023152" refname="UoS2153-sc-2011-02-14-1078206" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023152</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2153-sc-2011-02-14-1078206</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732374</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#3" center_name="SC" accession="ERX022112"> <IDENTIFIERS> <PRIMARY_ID>ERX022112</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732375, constructed from sample accession ERS023153 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023153" refname="UoS2166-sc-2011-02-14-1078207" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023153</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2166-sc-2011-02-14-1078207</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732375</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#4" center_name="SC" accession="ERX022113"> <IDENTIFIERS> <PRIMARY_ID>ERX022113</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732376, constructed from sample accession ERS023154 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023154" refname="UoS2168-sc-2011-02-14-1078208" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023154</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2168-sc-2011-02-14-1078208</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732376</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#5" center_name="SC" accession="ERX022114"> <IDENTIFIERS> <PRIMARY_ID>ERX022114</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732377, constructed from sample accession ERS023155 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023155" refname="UoS2173-sc-2011-02-14-1078209" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023155</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2173-sc-2011-02-14-1078209</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732377</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#6" center_name="SC" accession="ERX022115"> <IDENTIFIERS> <PRIMARY_ID>ERX022115</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732378, constructed from sample accession ERS023156 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023156" refname="UoS2180-sc-2011-02-14-1078210" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023156</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2180-sc-2011-02-14-1078210</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732378</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#7" center_name="SC" accession="ERX022116"> <IDENTIFIERS> <PRIMARY_ID>ERX022116</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732379, constructed from sample accession ERS023157 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023157" refname="UoS2186-sc-2011-02-14-1078211" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023157</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2186-sc-2011-02-14-1078211</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732379</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#8" center_name="SC" accession="ERX022117"> <IDENTIFIERS> <PRIMARY_ID>ERX022117</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732380, constructed from sample accession ERS023158 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023158" refname="UoS2191-sc-2011-02-14-1078212" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023158</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2191-sc-2011-02-14-1078212</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#9" center_name="SC" accession="ERX022118"> <IDENTIFIERS> <PRIMARY_ID>ERX022118</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732381, constructed from sample accession ERS023159 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023159" refname="UoS2196-sc-2011-02-14-1078213" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023159</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2196-sc-2011-02-14-1078213</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732381</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#10" center_name="SC" accession="ERX022119"> <IDENTIFIERS> <PRIMARY_ID>ERX022119</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732382, constructed from sample accession ERS023160 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023160" refname="UoS2199-sc-2011-02-14-1078214" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023160</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2199-sc-2011-02-14-1078214</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732382</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#11" center_name="SC" accession="ERX022120"> <IDENTIFIERS> <PRIMARY_ID>ERX022120</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732383, constructed from sample accession ERS023161 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023161" refname="UoS2205-sc-2011-02-14-1078215" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023161</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2205-sc-2011-02-14-1078215</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732383</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#12" center_name="SC" accession="ERX022121"> <IDENTIFIERS> <PRIMARY_ID>ERX022121</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732384, constructed from sample accession ERS023162 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023162" refname="UoS2210-sc-2011-02-14-1078216" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023162</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2210-sc-2011-02-14-1078216</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#13" center_name="SC" accession="ERX022122"> <IDENTIFIERS> <PRIMARY_ID>ERX022122</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732385, constructed from sample accession ERS023163 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023163" refname="UoS2215-sc-2011-02-14-1078217" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023163</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2215-sc-2011-02-14-1078217</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#14" center_name="SC" accession="ERX022123"> <IDENTIFIERS> <PRIMARY_ID>ERX022123</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732386, constructed from sample accession ERS023164 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023164" refname="UoS2216-sc-2011-02-14-1078218" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023164</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2216-sc-2011-02-14-1078218</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#15" center_name="SC" accession="ERX022124"> <IDENTIFIERS> <PRIMARY_ID>ERX022124</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732387, constructed from sample accession ERS023165 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023165" refname="UoS2217-sc-2011-02-14-1078219" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023165</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2217-sc-2011-02-14-1078219</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#16" center_name="SC" accession="ERX022125"> <IDENTIFIERS> <PRIMARY_ID>ERX022125</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732388, constructed from sample accession ERS023166 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023166" refname="UoS2225-sc-2011-02-14-1078220" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023166</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2225-sc-2011-02-14-1078220</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#17" center_name="SC" accession="ERX022126"> <IDENTIFIERS> <PRIMARY_ID>ERX022126</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732389, constructed from sample accession ERS023167 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023167" refname="UoS2227-sc-2011-02-14-1078221" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023167</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2227-sc-2011-02-14-1078221</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#18" center_name="SC" accession="ERX022127"> <IDENTIFIERS> <PRIMARY_ID>ERX022127</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732390, constructed from sample accession ERS023168 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023168" refname="UoS2233-sc-2011-02-14-1078222" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023168</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2233-sc-2011-02-14-1078222</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#19" center_name="SC" accession="ERX022128"> <IDENTIFIERS> <PRIMARY_ID>ERX022128</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732391, constructed from sample accession ERS023169 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023169" refname="UoS2235-sc-2011-02-14-1078223" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023169</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2235-sc-2011-02-14-1078223</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#20" center_name="SC" accession="ERX022129"> <IDENTIFIERS> <PRIMARY_ID>ERX022129</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732392, constructed from sample accession ERS023170 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023170" refname="UoS2236-sc-2011-02-14-1078224" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023170</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2236-sc-2011-02-14-1078224</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#21" center_name="SC" accession="ERX022130"> <IDENTIFIERS> <PRIMARY_ID>ERX022130</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732393, constructed from sample accession ERS023171 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023171" refname="UoS2237-sc-2011-02-14-1078225" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023171</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2237-sc-2011-02-14-1078225</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#22" center_name="SC" accession="ERX022131"> <IDENTIFIERS> <PRIMARY_ID>ERX022131</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732394, constructed from sample accession ERS023172 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023172" refname="UoS2240-sc-2011-02-14-1078226" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023172</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2240-sc-2011-02-14-1078226</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#23" center_name="SC" accession="ERX022132"> <IDENTIFIERS> <PRIMARY_ID>ERX022132</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732395, constructed from sample accession ERS023173 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023173" refname="UoS2243-sc-2011-02-14-1078227" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023173</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2243-sc-2011-02-14-1078227</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_7#24" center_name="SC" accession="ERX022133"> <IDENTIFIERS> <PRIMARY_ID>ERX022133</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_7#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732396, constructed from sample accession ERS023174 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_7). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023174" refname="UoS2244-sc-2011-02-14-1078228" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023174</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2244-sc-2011-02-14-1078228</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="249" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#1" center_name="SC" accession="ERX022134"> <IDENTIFIERS> <PRIMARY_ID>ERX022134</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732397, constructed from sample accession ERS023175 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023175" refname="UoS2247-sc-2011-02-14-1078229" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023175</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2247-sc-2011-02-14-1078229</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#2" center_name="SC" accession="ERX022135"> <IDENTIFIERS> <PRIMARY_ID>ERX022135</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732398, constructed from sample accession ERS023176 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023176" refname="UoS2250-sc-2011-02-14-1078230" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023176</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2250-sc-2011-02-14-1078230</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#3" center_name="SC" accession="ERX022136"> <IDENTIFIERS> <PRIMARY_ID>ERX022136</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732399, constructed from sample accession ERS023177 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023177" refname="UoS2254-sc-2011-02-14-1078231" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2254-sc-2011-02-14-1078231</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#4" center_name="SC" accession="ERX022137"> <IDENTIFIERS> <PRIMARY_ID>ERX022137</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732400, constructed from sample accession ERS023178 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023178" refname="UoS2255-sc-2011-02-14-1078232" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023178</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2255-sc-2011-02-14-1078232</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#5" center_name="SC" accession="ERX022138"> <IDENTIFIERS> <PRIMARY_ID>ERX022138</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732401, constructed from sample accession ERS023179 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023179" refname="UoS2258-sc-2011-02-14-1078233" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023179</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2258-sc-2011-02-14-1078233</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#6" center_name="SC" accession="ERX022139"> <IDENTIFIERS> <PRIMARY_ID>ERX022139</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732402, constructed from sample accession ERS023180 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023180" refname="UoS2261-sc-2011-02-14-1078234" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023180</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2261-sc-2011-02-14-1078234</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#7" center_name="SC" accession="ERX022140"> <IDENTIFIERS> <PRIMARY_ID>ERX022140</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732403, constructed from sample accession ERS023181 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023181" refname="UoS2271-sc-2011-02-14-1078235" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023181</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2271-sc-2011-02-14-1078235</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#8" center_name="SC" accession="ERX022141"> <IDENTIFIERS> <PRIMARY_ID>ERX022141</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732404, constructed from sample accession ERS023182 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023182" refname="UoS2275-sc-2011-02-14-1078236" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023182</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2275-sc-2011-02-14-1078236</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732404</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#9" center_name="SC" accession="ERX022142"> <IDENTIFIERS> <PRIMARY_ID>ERX022142</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732405, constructed from sample accession ERS023183 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023183" refname="UoS2279-sc-2011-02-14-1078237" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023183</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2279-sc-2011-02-14-1078237</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732405</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#10" center_name="SC" accession="ERX022143"> <IDENTIFIERS> <PRIMARY_ID>ERX022143</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732406, constructed from sample accession ERS023184 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023184" refname="UoS2280-sc-2011-02-14-1078238" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023184</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2280-sc-2011-02-14-1078238</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732406</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#11" center_name="SC" accession="ERX022144"> <IDENTIFIERS> <PRIMARY_ID>ERX022144</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732407, constructed from sample accession ERS023185 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023185" refname="UoS2287-sc-2011-02-14-1078239" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023185</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2287-sc-2011-02-14-1078239</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732407</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#12" center_name="SC" accession="ERX022145"> <IDENTIFIERS> <PRIMARY_ID>ERX022145</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732408, constructed from sample accession ERS023186 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023186" refname="UoS2288-sc-2011-02-14-1078240" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023186</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2288-sc-2011-02-14-1078240</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732408</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#13" center_name="SC" accession="ERX022146"> <IDENTIFIERS> <PRIMARY_ID>ERX022146</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732409, constructed from sample accession ERS023187 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023187" refname="UoS2289-sc-2011-02-14-1078241" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023187</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2289-sc-2011-02-14-1078241</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732409</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#14" center_name="SC" accession="ERX022147"> <IDENTIFIERS> <PRIMARY_ID>ERX022147</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732410, constructed from sample accession ERS023188 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023188" refname="UoS2297-sc-2011-02-14-1078242" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023188</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2297-sc-2011-02-14-1078242</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732410</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#15" center_name="SC" accession="ERX022148"> <IDENTIFIERS> <PRIMARY_ID>ERX022148</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732411, constructed from sample accession ERS023189 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023189" refname="UoS2298-sc-2011-02-14-1078243" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023189</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2298-sc-2011-02-14-1078243</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732411</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#16" center_name="SC" accession="ERX022149"> <IDENTIFIERS> <PRIMARY_ID>ERX022149</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732412, constructed from sample accession ERS023190 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023190" refname="UoS2300-sc-2011-02-14-1078244" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023190</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2300-sc-2011-02-14-1078244</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732412</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#17" center_name="SC" accession="ERX022150"> <IDENTIFIERS> <PRIMARY_ID>ERX022150</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732413, constructed from sample accession ERS023191 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023191" refname="UoS2305-sc-2011-02-14-1078245" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023191</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2305-sc-2011-02-14-1078245</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732413</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#18" center_name="SC" accession="ERX022151"> <IDENTIFIERS> <PRIMARY_ID>ERX022151</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732414, constructed from sample accession ERS023192 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023192" refname="UoS2306-sc-2011-02-14-1078246" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023192</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2306-sc-2011-02-14-1078246</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732414</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#19" center_name="SC" accession="ERX022152"> <IDENTIFIERS> <PRIMARY_ID>ERX022152</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732415, constructed from sample accession ERS023193 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023193" refname="UoS2307-sc-2011-02-14-1078247" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023193</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2307-sc-2011-02-14-1078247</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732415</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#20" center_name="SC" accession="ERX022153"> <IDENTIFIERS> <PRIMARY_ID>ERX022153</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732416, constructed from sample accession ERS023194 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023194" refname="UoS2308-sc-2011-02-14-1078248" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023194</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2308-sc-2011-02-14-1078248</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732416</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#21" center_name="SC" accession="ERX022154"> <IDENTIFIERS> <PRIMARY_ID>ERX022154</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732417, constructed from sample accession ERS023195 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023195" refname="UoS2311-sc-2011-02-14-1078249" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023195</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2311-sc-2011-02-14-1078249</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732417</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#22" center_name="SC" accession="ERX022155"> <IDENTIFIERS> <PRIMARY_ID>ERX022155</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732418, constructed from sample accession ERS023196 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023196" refname="UoS2315-sc-2011-02-14-1078250" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023196</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2315-sc-2011-02-14-1078250</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732418</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#23" center_name="SC" accession="ERX022156"> <IDENTIFIERS> <PRIMARY_ID>ERX022156</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732419, constructed from sample accession ERS023197 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023197" refname="UoS2316-sc-2011-02-14-1078251" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023197</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2316-sc-2011-02-14-1078251</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732419</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_8#24" center_name="SC" accession="ERX022157"> <IDENTIFIERS> <PRIMARY_ID>ERX022157</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_8#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732420, constructed from sample accession ERS023198 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_8). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023198" refname="UoS2319-sc-2011-02-14-1078252" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023198</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2319-sc-2011-02-14-1078252</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732420</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="69"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#1" center_name="SC" accession="ERX021966"> <IDENTIFIERS> <PRIMARY_ID>ERX021966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719088, constructed from sample accession ERS023006 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023006" refname="UoS0008-sc-2011-02-14-1078061" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023006</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0008-sc-2011-02-14-1078061</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719088</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#2" center_name="SC" accession="ERX021967"> <IDENTIFIERS> <PRIMARY_ID>ERX021967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719089, constructed from sample accession ERS023007 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023007" refname="UoS0011-sc-2011-02-14-1078062" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023007</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0011-sc-2011-02-14-1078062</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719089</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#3" center_name="SC" accession="ERX021968"> <IDENTIFIERS> <PRIMARY_ID>ERX021968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719090, constructed from sample accession ERS023008 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023008" refname="UoS0014-sc-2011-02-14-1078063" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023008</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0014-sc-2011-02-14-1078063</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719090</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#4" center_name="SC" accession="ERX021969"> <IDENTIFIERS> <PRIMARY_ID>ERX021969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719091, constructed from sample accession ERS023009 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023009" refname="UoS0015-sc-2011-02-14-1078064" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023009</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0015-sc-2011-02-14-1078064</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719091</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#5" center_name="SC" accession="ERX021970"> <IDENTIFIERS> <PRIMARY_ID>ERX021970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719092, constructed from sample accession ERS023010 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023010" refname="UoS0021-sc-2011-02-14-1078065" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023010</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0021-sc-2011-02-14-1078065</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719092</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#6" center_name="SC" accession="ERX021971"> <IDENTIFIERS> <PRIMARY_ID>ERX021971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719093, constructed from sample accession ERS023011 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023011" refname="UoS0023-sc-2011-02-14-1078066" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023011</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0023-sc-2011-02-14-1078066</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719093</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#7" center_name="SC" accession="ERX021972"> <IDENTIFIERS> <PRIMARY_ID>ERX021972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719094, constructed from sample accession ERS023012 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023012" refname="UoS0026-sc-2011-02-14-1078067" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023012</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0026-sc-2011-02-14-1078067</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719094</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#8" center_name="SC" accession="ERX021973"> <IDENTIFIERS> <PRIMARY_ID>ERX021973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719095, constructed from sample accession ERS023013 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023013" refname="UoS0038-sc-2011-02-14-1078068" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023013</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0038-sc-2011-02-14-1078068</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719095</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#9" center_name="SC" accession="ERX021974"> <IDENTIFIERS> <PRIMARY_ID>ERX021974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719096, constructed from sample accession ERS023014 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023014" refname="UoS0041-sc-2011-02-14-1078069" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023014</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0041-sc-2011-02-14-1078069</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719096</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#10" center_name="SC" accession="ERX021975"> <IDENTIFIERS> <PRIMARY_ID>ERX021975</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719097, constructed from sample accession ERS023015 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023015" refname="UoS0048-sc-2011-02-14-1078070" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023015</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0048-sc-2011-02-14-1078070</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719097</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#11" center_name="SC" accession="ERX021976"> <IDENTIFIERS> <PRIMARY_ID>ERX021976</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719098, constructed from sample accession ERS023016 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023016" refname="UoS0049-sc-2011-02-14-1078071" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023016</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0049-sc-2011-02-14-1078071</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719098</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#12" center_name="SC" accession="ERX021977"> <IDENTIFIERS> <PRIMARY_ID>ERX021977</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719099, constructed from sample accession ERS023017 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023017" refname="UoS0050-sc-2011-02-14-1078072" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023017</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0050-sc-2011-02-14-1078072</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719099</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#13" center_name="SC" accession="ERX021978"> <IDENTIFIERS> <PRIMARY_ID>ERX021978</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719100, constructed from sample accession ERS023018 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023018" refname="UoS0058-sc-2011-02-14-1078073" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023018</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0058-sc-2011-02-14-1078073</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719100</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#14" center_name="SC" accession="ERX021979"> <IDENTIFIERS> <PRIMARY_ID>ERX021979</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719101, constructed from sample accession ERS023019 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023019" refname="UoS0061-sc-2011-02-14-1078074" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023019</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0061-sc-2011-02-14-1078074</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719101</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#15" center_name="SC" accession="ERX021980"> <IDENTIFIERS> <PRIMARY_ID>ERX021980</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719102, constructed from sample accession ERS023020 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023020" refname="UoS0064-sc-2011-02-14-1078075" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023020</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0064-sc-2011-02-14-1078075</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719102</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#16" center_name="SC" accession="ERX021981"> <IDENTIFIERS> <PRIMARY_ID>ERX021981</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719103, constructed from sample accession ERS023021 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023021" refname="UoS0068-sc-2011-02-14-1078076" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023021</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0068-sc-2011-02-14-1078076</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719103</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#17" center_name="SC" accession="ERX021982"> <IDENTIFIERS> <PRIMARY_ID>ERX021982</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719104, constructed from sample accession ERS023022 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023022" refname="UoS0071-sc-2011-02-14-1078077" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023022</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0071-sc-2011-02-14-1078077</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719104</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#18" center_name="SC" accession="ERX021983"> <IDENTIFIERS> <PRIMARY_ID>ERX021983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719105, constructed from sample accession ERS023023 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023023" refname="UoS0075-sc-2011-02-14-1078078" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023023</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0075-sc-2011-02-14-1078078</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719105</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#19" center_name="SC" accession="ERX021984"> <IDENTIFIERS> <PRIMARY_ID>ERX021984</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719106, constructed from sample accession ERS023024 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023024" refname="UoS0080-sc-2011-02-14-1078079" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023024</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0080-sc-2011-02-14-1078079</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719106</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#20" center_name="SC" accession="ERX021985"> <IDENTIFIERS> <PRIMARY_ID>ERX021985</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719107, constructed from sample accession ERS023025 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023025" refname="UoS0081-sc-2011-02-14-1078080" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023025</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0081-sc-2011-02-14-1078080</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719107</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#21" center_name="SC" accession="ERX021986"> <IDENTIFIERS> <PRIMARY_ID>ERX021986</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719108, constructed from sample accession ERS023026 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023026" refname="UoS0082-sc-2011-02-14-1078081" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023026</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0082-sc-2011-02-14-1078081</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719108</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#22" center_name="SC" accession="ERX021987"> <IDENTIFIERS> <PRIMARY_ID>ERX021987</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719109, constructed from sample accession ERS023027 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023027" refname="UoS0093-sc-2011-02-14-1078082" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023027</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0093-sc-2011-02-14-1078082</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719109</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#23" center_name="SC" accession="ERX021988"> <IDENTIFIERS> <PRIMARY_ID>ERX021988</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719110, constructed from sample accession ERS023028 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023028" refname="UoS0094-sc-2011-02-14-1078083" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023028</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0094-sc-2011-02-14-1078083</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719110</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_3#24" center_name="SC" accession="ERX021989"> <IDENTIFIERS> <PRIMARY_ID>ERX021989</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_3#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719111, constructed from sample accession ERS023029 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_3). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023029" refname="UoS0095-sc-2011-02-14-1078084" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023029</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0095-sc-2011-02-14-1078084</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719111</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="187" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#1" center_name="SC" accession="ERX021990"> <IDENTIFIERS> <PRIMARY_ID>ERX021990</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719112, constructed from sample accession ERS023030 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023030" refname="UoS0103-sc-2011-02-14-1078085" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023030</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0103-sc-2011-02-14-1078085</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719112</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#2" center_name="SC" accession="ERX021991"> <IDENTIFIERS> <PRIMARY_ID>ERX021991</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719113, constructed from sample accession ERS023031 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023031" refname="UoS0110-sc-2011-02-14-1078086" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023031</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0110-sc-2011-02-14-1078086</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719113</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#3" center_name="SC" accession="ERX021992"> <IDENTIFIERS> <PRIMARY_ID>ERX021992</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719114, constructed from sample accession ERS023032 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023032" refname="UoS0113-sc-2011-02-14-1078087" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023032</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0113-sc-2011-02-14-1078087</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719114</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#4" center_name="SC" accession="ERX021993"> <IDENTIFIERS> <PRIMARY_ID>ERX021993</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719115, constructed from sample accession ERS023033 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023033" refname="UoS0135-sc-2011-02-14-1078088" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023033</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0135-sc-2011-02-14-1078088</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719115</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#5" center_name="SC" accession="ERX021994"> <IDENTIFIERS> <PRIMARY_ID>ERX021994</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719116, constructed from sample accession ERS023034 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023034" refname="UoS0136-sc-2011-02-14-1078089" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023034</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0136-sc-2011-02-14-1078089</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719116</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#6" center_name="SC" accession="ERX021995"> <IDENTIFIERS> <PRIMARY_ID>ERX021995</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719117, constructed from sample accession ERS023035 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023035" refname="UoS0138-sc-2011-02-14-1078090" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023035</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0138-sc-2011-02-14-1078090</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719117</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#7" center_name="SC" accession="ERX021996"> <IDENTIFIERS> <PRIMARY_ID>ERX021996</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719118, constructed from sample accession ERS023036 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023036" refname="UoS0140-sc-2011-02-14-1078091" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023036</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0140-sc-2011-02-14-1078091</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719118</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#8" center_name="SC" accession="ERX021997"> <IDENTIFIERS> <PRIMARY_ID>ERX021997</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719119, constructed from sample accession ERS023037 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023037" refname="UoS0141-sc-2011-02-14-1078092" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023037</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0141-sc-2011-02-14-1078092</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719119</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#9" center_name="SC" accession="ERX021998"> <IDENTIFIERS> <PRIMARY_ID>ERX021998</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719120, constructed from sample accession ERS023038 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023038" refname="UoS0145-sc-2011-02-14-1078093" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023038</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0145-sc-2011-02-14-1078093</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719120</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#10" center_name="SC" accession="ERX021999"> <IDENTIFIERS> <PRIMARY_ID>ERX021999</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719121, constructed from sample accession ERS023039 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023039" refname="UoS0152-sc-2011-02-14-1078094" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023039</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0152-sc-2011-02-14-1078094</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719121</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#11" center_name="SC" accession="ERX022000"> <IDENTIFIERS> <PRIMARY_ID>ERX022000</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719122, constructed from sample accession ERS023040 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023040" refname="UoS0154-sc-2011-02-14-1078095" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023040</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0154-sc-2011-02-14-1078095</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719122</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#12" center_name="SC" accession="ERX022001"> <IDENTIFIERS> <PRIMARY_ID>ERX022001</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719123, constructed from sample accession ERS023041 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023041" refname="UoS0155-sc-2011-02-14-1078096" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023041</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0155-sc-2011-02-14-1078096</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719123</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#13" center_name="SC" accession="ERX022002"> <IDENTIFIERS> <PRIMARY_ID>ERX022002</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719124, constructed from sample accession ERS023042 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023042" refname="UoS0156-sc-2011-02-14-1078097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023042</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0156-sc-2011-02-14-1078097</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719124</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#14" center_name="SC" accession="ERX022003"> <IDENTIFIERS> <PRIMARY_ID>ERX022003</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719125, constructed from sample accession ERS023043 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023043" refname="UoS0159-sc-2011-02-14-1078098" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023043</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0159-sc-2011-02-14-1078098</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719125</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#15" center_name="SC" accession="ERX022004"> <IDENTIFIERS> <PRIMARY_ID>ERX022004</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719126, constructed from sample accession ERS023044 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023044" refname="UoS0160-sc-2011-02-14-1078099" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023044</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0160-sc-2011-02-14-1078099</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719126</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#16" center_name="SC" accession="ERX022005"> <IDENTIFIERS> <PRIMARY_ID>ERX022005</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719127, constructed from sample accession ERS023045 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023045" refname="UoS0163-sc-2011-02-14-1078100" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023045</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0163-sc-2011-02-14-1078100</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719127</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#17" center_name="SC" accession="ERX022006"> <IDENTIFIERS> <PRIMARY_ID>ERX022006</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719128, constructed from sample accession ERS023046 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023046" refname="UoS0165-sc-2011-02-14-1078101" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023046</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0165-sc-2011-02-14-1078101</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719128</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#18" center_name="SC" accession="ERX022007"> <IDENTIFIERS> <PRIMARY_ID>ERX022007</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719129, constructed from sample accession ERS023047 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023047" refname="UoS0172-sc-2011-02-14-1078102" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023047</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0172-sc-2011-02-14-1078102</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719129</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#19" center_name="SC" accession="ERX022008"> <IDENTIFIERS> <PRIMARY_ID>ERX022008</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719130, constructed from sample accession ERS023048 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023048" refname="UoS0173-sc-2011-02-14-1078103" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023048</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0173-sc-2011-02-14-1078103</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719130</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#20" center_name="SC" accession="ERX022009"> <IDENTIFIERS> <PRIMARY_ID>ERX022009</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719131, constructed from sample accession ERS023049 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023049" refname="UoS0174-sc-2011-02-14-1078104" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023049</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0174-sc-2011-02-14-1078104</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719131</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#21" center_name="SC" accession="ERX022010"> <IDENTIFIERS> <PRIMARY_ID>ERX022010</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719132, constructed from sample accession ERS023050 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023050" refname="UoS0175-sc-2011-02-14-1078105" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023050</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0175-sc-2011-02-14-1078105</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719132</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#22" center_name="SC" accession="ERX022011"> <IDENTIFIERS> <PRIMARY_ID>ERX022011</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719133, constructed from sample accession ERS023051 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023051" refname="UoS0176-sc-2011-02-14-1078106" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023051</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0176-sc-2011-02-14-1078106</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719133</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#23" center_name="SC" accession="ERX022012"> <IDENTIFIERS> <PRIMARY_ID>ERX022012</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719134, constructed from sample accession ERS023052 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023052" refname="UoS0194-sc-2011-02-14-1078107" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023052</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0194-sc-2011-02-14-1078107</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719134</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_4#24" center_name="SC" accession="ERX022013"> <IDENTIFIERS> <PRIMARY_ID>ERX022013</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_4#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719135, constructed from sample accession ERS023053 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_4). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023053" refname="UoS0196-sc-2011-02-14-1078108" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023053</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0196-sc-2011-02-14-1078108</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719135</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="189" NOMINAL_SDEV="58"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#1" center_name="SC" accession="ERX022014"> <IDENTIFIERS> <PRIMARY_ID>ERX022014</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719136, constructed from sample accession ERS023054 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023054" refname="UoS0205-sc-2011-02-14-1078109" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023054</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0205-sc-2011-02-14-1078109</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719136</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#2" center_name="SC" accession="ERX022015"> <IDENTIFIERS> <PRIMARY_ID>ERX022015</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719137, constructed from sample accession ERS023055 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023055" refname="UoS0207-sc-2011-02-14-1078110" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023055</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0207-sc-2011-02-14-1078110</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719137</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#3" center_name="SC" accession="ERX022016"> <IDENTIFIERS> <PRIMARY_ID>ERX022016</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719138, constructed from sample accession ERS023056 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023056" refname="UoS0214-sc-2011-02-14-1078111" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023056</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0214-sc-2011-02-14-1078111</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719138</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#4" center_name="SC" accession="ERX022017"> <IDENTIFIERS> <PRIMARY_ID>ERX022017</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719139, constructed from sample accession ERS023057 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023057" refname="UoS0215-sc-2011-02-14-1078112" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023057</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0215-sc-2011-02-14-1078112</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719139</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#5" center_name="SC" accession="ERX022018"> <IDENTIFIERS> <PRIMARY_ID>ERX022018</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719140, constructed from sample accession ERS023058 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023058" refname="UoS0218-sc-2011-02-14-1078113" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023058</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0218-sc-2011-02-14-1078113</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719140</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#6" center_name="SC" accession="ERX022019"> <IDENTIFIERS> <PRIMARY_ID>ERX022019</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719141, constructed from sample accession ERS023059 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023059" refname="UoS0220-sc-2011-02-14-1078114" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023059</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0220-sc-2011-02-14-1078114</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719141</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#7" center_name="SC" accession="ERX022020"> <IDENTIFIERS> <PRIMARY_ID>ERX022020</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719142, constructed from sample accession ERS023060 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023060" refname="UoS0221-sc-2011-02-14-1078115" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023060</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0221-sc-2011-02-14-1078115</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719142</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#8" center_name="SC" accession="ERX022021"> <IDENTIFIERS> <PRIMARY_ID>ERX022021</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719143, constructed from sample accession ERS023061 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023061" refname="UoS0223-sc-2011-02-14-1078116" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023061</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0223-sc-2011-02-14-1078116</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719143</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#9" center_name="SC" accession="ERX022022"> <IDENTIFIERS> <PRIMARY_ID>ERX022022</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719144, constructed from sample accession ERS023062 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023062" refname="UoS0232-sc-2011-02-14-1078117" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023062</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0232-sc-2011-02-14-1078117</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719144</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#10" center_name="SC" accession="ERX022023"> <IDENTIFIERS> <PRIMARY_ID>ERX022023</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719145, constructed from sample accession ERS023063 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023063" refname="UoS0233-sc-2011-02-14-1078118" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023063</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0233-sc-2011-02-14-1078118</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719145</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#11" center_name="SC" accession="ERX022024"> <IDENTIFIERS> <PRIMARY_ID>ERX022024</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719146, constructed from sample accession ERS023064 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023064" refname="UoS0237-sc-2011-02-14-1078119" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023064</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0237-sc-2011-02-14-1078119</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719146</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#12" center_name="SC" accession="ERX022025"> <IDENTIFIERS> <PRIMARY_ID>ERX022025</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719147, constructed from sample accession ERS023065 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023065" refname="UoS0242-sc-2011-02-14-1078120" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023065</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0242-sc-2011-02-14-1078120</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719147</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#13" center_name="SC" accession="ERX022026"> <IDENTIFIERS> <PRIMARY_ID>ERX022026</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719148, constructed from sample accession ERS023067 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023067" refname="UoS0245-sc-2011-02-14-1078121" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023067</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0245-sc-2011-02-14-1078121</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719148</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#14" center_name="SC" accession="ERX022027"> <IDENTIFIERS> <PRIMARY_ID>ERX022027</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719149, constructed from sample accession ERS023068 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023068" refname="UoS0251-sc-2011-02-14-1078122" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023068</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0251-sc-2011-02-14-1078122</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719149</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#15" center_name="SC" accession="ERX022028"> <IDENTIFIERS> <PRIMARY_ID>ERX022028</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719150, constructed from sample accession ERS023069 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023069" refname="UoS0252-sc-2011-02-14-1078123" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023069</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0252-sc-2011-02-14-1078123</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719150</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#16" center_name="SC" accession="ERX022029"> <IDENTIFIERS> <PRIMARY_ID>ERX022029</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719151, constructed from sample accession ERS023070 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023070" refname="UoS0254-sc-2011-02-14-1078124" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023070</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0254-sc-2011-02-14-1078124</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719151</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#17" center_name="SC" accession="ERX022030"> <IDENTIFIERS> <PRIMARY_ID>ERX022030</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719152, constructed from sample accession ERS023071 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023071" refname="UoS0256-sc-2011-02-14-1078125" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023071</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0256-sc-2011-02-14-1078125</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719152</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#18" center_name="SC" accession="ERX022031"> <IDENTIFIERS> <PRIMARY_ID>ERX022031</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719153, constructed from sample accession ERS023072 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023072" refname="UoS0257-sc-2011-02-14-1078126" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023072</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0257-sc-2011-02-14-1078126</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#19" center_name="SC" accession="ERX022032"> <IDENTIFIERS> <PRIMARY_ID>ERX022032</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719154, constructed from sample accession ERS023073 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023073" refname="UoS0262-sc-2011-02-14-1078127" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023073</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0262-sc-2011-02-14-1078127</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#20" center_name="SC" accession="ERX022033"> <IDENTIFIERS> <PRIMARY_ID>ERX022033</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719155, constructed from sample accession ERS023074 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023074" refname="UoS0263-sc-2011-02-14-1078128" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023074</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0263-sc-2011-02-14-1078128</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#21" center_name="SC" accession="ERX022034"> <IDENTIFIERS> <PRIMARY_ID>ERX022034</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719156, constructed from sample accession ERS023075 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023075" refname="UoS0266-sc-2011-02-14-1078129" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023075</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0266-sc-2011-02-14-1078129</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#22" center_name="SC" accession="ERX022035"> <IDENTIFIERS> <PRIMARY_ID>ERX022035</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719157, constructed from sample accession ERS023076 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023076" refname="UoS0267-sc-2011-02-14-1078130" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023076</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0267-sc-2011-02-14-1078130</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#23" center_name="SC" accession="ERX022036"> <IDENTIFIERS> <PRIMARY_ID>ERX022036</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719158, constructed from sample accession ERS023077 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023077" refname="UoS0268-sc-2011-02-14-1078131" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023077</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0268-sc-2011-02-14-1078131</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_5#24" center_name="SC" accession="ERX022037"> <IDENTIFIERS> <PRIMARY_ID>ERX022037</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_5#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719159, constructed from sample accession ERS023078 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_5). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023078" refname="UoS0272-sc-2011-02-14-1078132" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023078</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0272-sc-2011-02-14-1078132</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="192" NOMINAL_SDEV="62"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#1" center_name="SC" accession="ERX022038"> <IDENTIFIERS> <PRIMARY_ID>ERX022038</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719160, constructed from sample accession ERS023079 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023079" refname="UoS0273-sc-2011-02-14-1078133" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023079</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0273-sc-2011-02-14-1078133</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#2" center_name="SC" accession="ERX022039"> <IDENTIFIERS> <PRIMARY_ID>ERX022039</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719161, constructed from sample accession ERS023080 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023080" refname="UoS0274-sc-2011-02-14-1078134" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023080</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0274-sc-2011-02-14-1078134</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#3" center_name="SC" accession="ERX022040"> <IDENTIFIERS> <PRIMARY_ID>ERX022040</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719162, constructed from sample accession ERS023081 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023081" refname="UoS0276-sc-2011-02-14-1078135" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023081</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0276-sc-2011-02-14-1078135</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#4" center_name="SC" accession="ERX022041"> <IDENTIFIERS> <PRIMARY_ID>ERX022041</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719163, constructed from sample accession ERS023082 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023082" refname="UoS0279-sc-2011-02-14-1078136" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023082</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0279-sc-2011-02-14-1078136</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#5" center_name="SC" accession="ERX022042"> <IDENTIFIERS> <PRIMARY_ID>ERX022042</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719164, constructed from sample accession ERS023083 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023083" refname="UoS0280-sc-2011-02-14-1078137" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023083</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0280-sc-2011-02-14-1078137</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#6" center_name="SC" accession="ERX022043"> <IDENTIFIERS> <PRIMARY_ID>ERX022043</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719165, constructed from sample accession ERS023084 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023084" refname="UoS0281-sc-2011-02-14-1078138" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023084</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0281-sc-2011-02-14-1078138</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#7" center_name="SC" accession="ERX022044"> <IDENTIFIERS> <PRIMARY_ID>ERX022044</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719166, constructed from sample accession ERS023085 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023085" refname="UoS0284-sc-2011-02-14-1078139" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023085</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0284-sc-2011-02-14-1078139</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#8" center_name="SC" accession="ERX022045"> <IDENTIFIERS> <PRIMARY_ID>ERX022045</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719167, constructed from sample accession ERS023086 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023086" refname="UoS0285-sc-2011-02-14-1078140" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023086</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0285-sc-2011-02-14-1078140</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#9" center_name="SC" accession="ERX022046"> <IDENTIFIERS> <PRIMARY_ID>ERX022046</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719168, constructed from sample accession ERS023087 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023087" refname="UoS0288-sc-2011-02-14-1078141" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023087</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0288-sc-2011-02-14-1078141</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#10" center_name="SC" accession="ERX022047"> <IDENTIFIERS> <PRIMARY_ID>ERX022047</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719169, constructed from sample accession ERS023088 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023088" refname="UoS0289-sc-2011-02-14-1078142" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023088</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0289-sc-2011-02-14-1078142</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#11" center_name="SC" accession="ERX022048"> <IDENTIFIERS> <PRIMARY_ID>ERX022048</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719170, constructed from sample accession ERS023089 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023089" refname="UoS0290-sc-2011-02-14-1078143" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023089</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0290-sc-2011-02-14-1078143</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719170</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#12" center_name="SC" accession="ERX022049"> <IDENTIFIERS> <PRIMARY_ID>ERX022049</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719171, constructed from sample accession ERS023090 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023090" refname="UoS0291-sc-2011-02-14-1078144" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023090</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0291-sc-2011-02-14-1078144</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719171</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#13" center_name="SC" accession="ERX022050"> <IDENTIFIERS> <PRIMARY_ID>ERX022050</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719172, constructed from sample accession ERS023091 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023091" refname="UoS0297-sc-2011-02-14-1078145" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023091</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0297-sc-2011-02-14-1078145</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719172</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#14" center_name="SC" accession="ERX022051"> <IDENTIFIERS> <PRIMARY_ID>ERX022051</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719173, constructed from sample accession ERS023092 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023092" refname="UoS0301-sc-2011-02-14-1078146" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023092</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0301-sc-2011-02-14-1078146</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719173</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#15" center_name="SC" accession="ERX022052"> <IDENTIFIERS> <PRIMARY_ID>ERX022052</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719174, constructed from sample accession ERS023093 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023093" refname="UoS0302-sc-2011-02-14-1078147" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0302-sc-2011-02-14-1078147</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719174</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#16" center_name="SC" accession="ERX022053"> <IDENTIFIERS> <PRIMARY_ID>ERX022053</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719175, constructed from sample accession ERS023094 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023094" refname="UoS0303-sc-2011-02-14-1078148" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023094</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0303-sc-2011-02-14-1078148</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719175</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#17" center_name="SC" accession="ERX022054"> <IDENTIFIERS> <PRIMARY_ID>ERX022054</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719176, constructed from sample accession ERS023095 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023095" refname="UoS0304-sc-2011-02-14-1078149" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023095</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0304-sc-2011-02-14-1078149</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719176</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#18" center_name="SC" accession="ERX022055"> <IDENTIFIERS> <PRIMARY_ID>ERX022055</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719177, constructed from sample accession ERS023096 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023096" refname="UoS0305-sc-2011-02-14-1078150" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023096</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0305-sc-2011-02-14-1078150</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719177</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#19" center_name="SC" accession="ERX022056"> <IDENTIFIERS> <PRIMARY_ID>ERX022056</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719178, constructed from sample accession ERS023097 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023097" refname="UoS0307-sc-2011-02-14-1078151" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023097</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0307-sc-2011-02-14-1078151</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719178</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#20" center_name="SC" accession="ERX022057"> <IDENTIFIERS> <PRIMARY_ID>ERX022057</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719179, constructed from sample accession ERS023098 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023098" refname="UoS0308-sc-2011-02-14-1078152" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023098</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0308-sc-2011-02-14-1078152</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719179</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#21" center_name="SC" accession="ERX022058"> <IDENTIFIERS> <PRIMARY_ID>ERX022058</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719180, constructed from sample accession ERS023099 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023099" refname="UoS0310-sc-2011-02-14-1078153" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023099</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0310-sc-2011-02-14-1078153</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719180</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#22" center_name="SC" accession="ERX022059"> <IDENTIFIERS> <PRIMARY_ID>ERX022059</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719181, constructed from sample accession ERS023100 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023100" refname="UoS0311-sc-2011-02-14-1078154" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023100</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0311-sc-2011-02-14-1078154</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719181</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#23" center_name="SC" accession="ERX022060"> <IDENTIFIERS> <PRIMARY_ID>ERX022060</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719182, constructed from sample accession ERS023101 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023101" refname="UoS0314-sc-2011-02-14-1078155" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023101</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0314-sc-2011-02-14-1078155</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719182</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6470_6#24" center_name="SC" accession="ERX022061"> <IDENTIFIERS> <PRIMARY_ID>ERX022061</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6470_6#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2719183, constructed from sample accession ERS023102 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6470_6). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023102" refname="UoS0315-sc-2011-02-14-1078156" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023102</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0315-sc-2011-02-14-1078156</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2719183</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="194" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="24" min_match="7" max_mismatch="1" match_edge="end">TTGACTCT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#1" center_name="SC" accession="ERX022062"> <IDENTIFIERS> <PRIMARY_ID>ERX022062</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732325, constructed from sample accession ERS023103 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023103" refname="UoS0316-sc-2011-02-14-1078157" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023103</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0316-sc-2011-02-14-1078157</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732325</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#2" center_name="SC" accession="ERX022063"> <IDENTIFIERS> <PRIMARY_ID>ERX022063</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732326, constructed from sample accession ERS023104 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023104" refname="UoS0317-sc-2011-02-14-1078158" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023104</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0317-sc-2011-02-14-1078158</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732326</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#3" center_name="SC" accession="ERX022064"> <IDENTIFIERS> <PRIMARY_ID>ERX022064</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732327, constructed from sample accession ERS023105 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023105" refname="UoS0318-sc-2011-02-14-1078159" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023105</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0318-sc-2011-02-14-1078159</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732327</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#4" center_name="SC" accession="ERX022065"> <IDENTIFIERS> <PRIMARY_ID>ERX022065</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732328, constructed from sample accession ERS023106 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023106" refname="UoS0319-sc-2011-02-14-1078160" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023106</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0319-sc-2011-02-14-1078160</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732328</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#5" center_name="SC" accession="ERX022066"> <IDENTIFIERS> <PRIMARY_ID>ERX022066</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732329, constructed from sample accession ERS023107 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023107" refname="UoS0320-sc-2011-02-14-1078161" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023107</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0320-sc-2011-02-14-1078161</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732329</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#6" center_name="SC" accession="ERX022067"> <IDENTIFIERS> <PRIMARY_ID>ERX022067</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732330, constructed from sample accession ERS023108 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023108" refname="UoS0321-sc-2011-02-14-1078162" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023108</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0321-sc-2011-02-14-1078162</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732330</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#7" center_name="SC" accession="ERX022068"> <IDENTIFIERS> <PRIMARY_ID>ERX022068</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732331, constructed from sample accession ERS023109 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023109" refname="UoS0322-sc-2011-02-14-1078163" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023109</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0322-sc-2011-02-14-1078163</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732331</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#8" center_name="SC" accession="ERX022069"> <IDENTIFIERS> <PRIMARY_ID>ERX022069</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732332, constructed from sample accession ERS023110 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023110" refname="UoS0324-sc-2011-02-14-1078164" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023110</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS0324-sc-2011-02-14-1078164</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732332</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#9" center_name="SC" accession="ERX022070"> <IDENTIFIERS> <PRIMARY_ID>ERX022070</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732333, constructed from sample accession ERS023111 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023111" refname="UoS2001-sc-2011-02-14-1078165" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023111</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2001-sc-2011-02-14-1078165</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732333</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#10" center_name="SC" accession="ERX022071"> <IDENTIFIERS> <PRIMARY_ID>ERX022071</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732334, constructed from sample accession ERS023112 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023112" refname="UoS2002-sc-2011-02-14-1078166" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023112</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2002-sc-2011-02-14-1078166</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732334</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#11" center_name="SC" accession="ERX022072"> <IDENTIFIERS> <PRIMARY_ID>ERX022072</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732335, constructed from sample accession ERS023113 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023113" refname="UoS2003-sc-2011-02-14-1078167" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023113</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2003-sc-2011-02-14-1078167</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732335</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#12" center_name="SC" accession="ERX022073"> <IDENTIFIERS> <PRIMARY_ID>ERX022073</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732336, constructed from sample accession ERS023114 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023114" refname="UoS2006-sc-2011-02-14-1078168" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023114</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2006-sc-2011-02-14-1078168</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732336</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#13" center_name="SC" accession="ERX022074"> <IDENTIFIERS> <PRIMARY_ID>ERX022074</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732337, constructed from sample accession ERS023115 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023115" refname="UoS2011-sc-2011-02-14-1078169" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023115</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2011-sc-2011-02-14-1078169</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732337</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#14" center_name="SC" accession="ERX022075"> <IDENTIFIERS> <PRIMARY_ID>ERX022075</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732338, constructed from sample accession ERS023116 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023116" refname="UoS2014-sc-2011-02-14-1078170" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023116</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2014-sc-2011-02-14-1078170</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732338</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#15" center_name="SC" accession="ERX022076"> <IDENTIFIERS> <PRIMARY_ID>ERX022076</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732339, constructed from sample accession ERS023117 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023117" refname="UoS2018-sc-2011-02-14-1078171" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023117</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2018-sc-2011-02-14-1078171</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732339</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#16" center_name="SC" accession="ERX022077"> <IDENTIFIERS> <PRIMARY_ID>ERX022077</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732340, constructed from sample accession ERS023118 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023118" refname="UoS2021-sc-2011-02-14-1078172" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023118</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2021-sc-2011-02-14-1078172</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732340</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#17" center_name="SC" accession="ERX022078"> <IDENTIFIERS> <PRIMARY_ID>ERX022078</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732341, constructed from sample accession ERS023119 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023119" refname="UoS2024-sc-2011-02-14-1078173" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023119</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2024-sc-2011-02-14-1078173</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732341</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#18" center_name="SC" accession="ERX022079"> <IDENTIFIERS> <PRIMARY_ID>ERX022079</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732342, constructed from sample accession ERS023120 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023120" refname="UoS2027-sc-2011-02-14-1078174" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023120</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2027-sc-2011-02-14-1078174</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732342</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#19" center_name="SC" accession="ERX022080"> <IDENTIFIERS> <PRIMARY_ID>ERX022080</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732343, constructed from sample accession ERS023121 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023121" refname="UoS2029-sc-2011-02-14-1078175" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023121</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2029-sc-2011-02-14-1078175</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732343</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#20" center_name="SC" accession="ERX022081"> <IDENTIFIERS> <PRIMARY_ID>ERX022081</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732344, constructed from sample accession ERS023122 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023122" refname="UoS2030-sc-2011-02-14-1078176" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023122</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2030-sc-2011-02-14-1078176</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732344</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6472_5#21" center_name="SC" accession="ERX022082"> <IDENTIFIERS> <PRIMARY_ID>ERX022082</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6472_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000513" refname="Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2732345, constructed from sample accession ERS023123 for study accession ERP000513. This is part of an Illumina multiplexed sequencing run (6472_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS023123" refname="UoS2032-sc-2011-02-14-1078177" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS023123</PRIMARY_ID> <SUBMITTER_ID namespace="SC">UoS2032-sc-2011-02-14-1078177</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2732345</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>