ERX022918 SC_EXP_3014_6#1 <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62629, constructed from sample accession ERS004468 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004468" refname="183902-sc-2010-05-07-5296" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">183902-sc-2010-05-07-5296</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62629</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#2" center_name="SC" accession="ERX022919"> <IDENTIFIERS> <PRIMARY_ID>ERX022919</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62631, constructed from sample accession ERS004469 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004469" refname="738357-sc-2010-05-07-5297" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">738357-sc-2010-05-07-5297</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62631</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#3" center_name="SC" accession="ERX022920"> <IDENTIFIERS> <PRIMARY_ID>ERX022920</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62633, constructed from sample accession ERS004471 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004471" refname="62607-sc-2010-05-07-5298" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">62607-sc-2010-05-07-5298</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62633</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#5" center_name="SC" accession="ERX022921"> <IDENTIFIERS> <PRIMARY_ID>ERX022921</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62637, constructed from sample accession ERS004473 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004473" refname="270-sc-2010-05-07-5300" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">270-sc-2010-05-07-5300</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62637</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#6" center_name="SC" accession="ERX022922"> <IDENTIFIERS> <PRIMARY_ID>ERX022922</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62639, constructed from sample accession ERS004474 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004474" refname="474-sc-2010-05-07-5301" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">474-sc-2010-05-07-5301</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62639</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#7" center_name="SC" accession="ERX022923"> <IDENTIFIERS> <PRIMARY_ID>ERX022923</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62641, constructed from sample accession ERS004475 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004475" refname="63402-sc-2010-05-07-5302" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">63402-sc-2010-05-07-5302</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62641</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#8" center_name="SC" accession="ERX022924"> <IDENTIFIERS> <PRIMARY_ID>ERX022924</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62643, constructed from sample accession ERS004476 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004476" refname="27799-sc-2010-05-07-5303" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">27799-sc-2010-05-07-5303</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62643</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#9" center_name="SC" accession="ERX022925"> <IDENTIFIERS> <PRIMARY_ID>ERX022925</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62645, constructed from sample accession ERS004477 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004477" refname="96307-sc-2010-05-07-5304" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">96307-sc-2010-05-07-5304</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62645</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3014_6#10" center_name="SC" accession="ERX022926"> <IDENTIFIERS> <PRIMARY_ID>ERX022926</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3014_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62647, constructed from sample accession ERS004478 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3014_6). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004478" refname="56507-sc-2010-05-07-5305" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">56507-sc-2010-05-07-5305</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62647</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="207" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#1" center_name="SC" accession="ERX022927"> <IDENTIFIERS> <PRIMARY_ID>ERX022927</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62629, constructed from sample accession ERS004468 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004468" refname="183902-sc-2010-05-07-5296" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">183902-sc-2010-05-07-5296</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62629</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#2" center_name="SC" accession="ERX022928"> <IDENTIFIERS> <PRIMARY_ID>ERX022928</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62631, constructed from sample accession ERS004469 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004469" refname="738357-sc-2010-05-07-5297" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">738357-sc-2010-05-07-5297</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62631</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#3" center_name="SC" accession="ERX022929"> <IDENTIFIERS> <PRIMARY_ID>ERX022929</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62633, constructed from sample accession ERS004471 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004471" refname="62607-sc-2010-05-07-5298" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">62607-sc-2010-05-07-5298</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62633</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#5" center_name="SC" accession="ERX022930"> <IDENTIFIERS> <PRIMARY_ID>ERX022930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62637, constructed from sample accession ERS004473 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004473" refname="270-sc-2010-05-07-5300" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">270-sc-2010-05-07-5300</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62637</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#6" center_name="SC" accession="ERX022931"> <IDENTIFIERS> <PRIMARY_ID>ERX022931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62639, constructed from sample accession ERS004474 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004474" refname="474-sc-2010-05-07-5301" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">474-sc-2010-05-07-5301</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62639</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#7" center_name="SC" accession="ERX022932"> <IDENTIFIERS> <PRIMARY_ID>ERX022932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62641, constructed from sample accession ERS004475 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004475" refname="63402-sc-2010-05-07-5302" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">63402-sc-2010-05-07-5302</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62641</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#8" center_name="SC" accession="ERX022933"> <IDENTIFIERS> <PRIMARY_ID>ERX022933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62643, constructed from sample accession ERS004476 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004476" refname="27799-sc-2010-05-07-5303" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">27799-sc-2010-05-07-5303</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62643</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#9" center_name="SC" accession="ERX022934"> <IDENTIFIERS> <PRIMARY_ID>ERX022934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62645, constructed from sample accession ERS004477 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004477" refname="96307-sc-2010-05-07-5304" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">96307-sc-2010-05-07-5304</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62645</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3479_8#10" center_name="SC" accession="ERX022935"> <IDENTIFIERS> <PRIMARY_ID>ERX022935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3479_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62647, constructed from sample accession ERS004478 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3479_8). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004478" refname="56507-sc-2010-05-07-5305" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">56507-sc-2010-05-07-5305</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62647</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="213" NOMINAL_SDEV="60"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#1" center_name="SC" accession="ERX022936"> <IDENTIFIERS> <PRIMARY_ID>ERX022936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62589, constructed from sample accession ERS004452 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004452" refname="H94564-sc-2010-05-07-5277" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004452</PRIMARY_ID> <SUBMITTER_ID namespace="SC">H94564-sc-2010-05-07-5277</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62589</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#2" center_name="SC" accession="ERX022937"> <IDENTIFIERS> <PRIMARY_ID>ERX022937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62591, constructed from sample accession ERS004449 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004449" refname="M67633-sc-2010-05-07-5278" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004449</PRIMARY_ID> <SUBMITTER_ID namespace="SC">M67633-sc-2010-05-07-5278</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62591</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#3" center_name="SC" accession="ERX022938"> <IDENTIFIERS> <PRIMARY_ID>ERX022938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62593, constructed from sample accession ERS004457 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004457" refname="106541MSSA-sc-2010-05-07-5279" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004457</PRIMARY_ID> <SUBMITTER_ID namespace="SC">106541MSSA-sc-2010-05-07-5279</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62593</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#4" center_name="SC" accession="ERX022939"> <IDENTIFIERS> <PRIMARY_ID>ERX022939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62595, constructed from sample accession ERS004451 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence TGACCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004451" refname="HO8164057805-sc-2010-05-07-5280" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004451</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HO8164057805-sc-2010-05-07-5280</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62595</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="5" max_mismatch="1" match_edge="end">TGACCA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#5" center_name="SC" accession="ERX022940"> <IDENTIFIERS> <PRIMARY_ID>ERX022940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62597, constructed from sample accession ERS004454 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004454" refname="HO8066057305-sc-2010-05-07-5281" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004454</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HO8066057305-sc-2010-05-07-5281</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62597</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#6" center_name="SC" accession="ERX022941"> <IDENTIFIERS> <PRIMARY_ID>ERX022941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62599, constructed from sample accession ERS004453 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004453" refname="HO7234041405-sc-2010-05-07-5282" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004453</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HO7234041405-sc-2010-05-07-5282</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62599</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#7" center_name="SC" accession="ERX022942"> <IDENTIFIERS> <PRIMARY_ID>ERX022942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62601, constructed from sample accession ERS004455 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004455" refname="RH0600036005-sc-2010-05-07-5283" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004455</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RH0600036005-sc-2010-05-07-5283</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62601</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#8" center_name="SC" accession="ERX022943"> <IDENTIFIERS> <PRIMARY_ID>ERX022943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62603, constructed from sample accession ERS004456 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004456" refname="HO8054059105-sc-2010-05-07-5284" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004456</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HO8054059105-sc-2010-05-07-5284</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62603</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#9" center_name="SC" accession="ERX022944"> <IDENTIFIERS> <PRIMARY_ID>ERX022944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62605, constructed from sample accession ERS004458 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004458" refname="RH0600035905-sc-2010-05-07-5285" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004458</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RH0600035905-sc-2010-05-07-5285</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62605</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_7#10" center_name="SC" accession="ERX022945"> <IDENTIFIERS> <PRIMARY_ID>ERX022945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62607, constructed from sample accession ERS004448 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_7). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004448" refname="T41908-sc-2010-05-07-5276" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004448</PRIMARY_ID> <SUBMITTER_ID namespace="SC">T41908-sc-2010-05-07-5276</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62607</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="215" NOMINAL_SDEV="55"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#1" center_name="SC" accession="ERX022946"> <IDENTIFIERS> <PRIMARY_ID>ERX022946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62609, constructed from sample accession ERS004461 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004461" refname="729192-sc-2010-05-07-5286" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004461</PRIMARY_ID> <SUBMITTER_ID namespace="SC">729192-sc-2010-05-07-5286</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62609</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#2" center_name="SC" accession="ERX022947"> <IDENTIFIERS> <PRIMARY_ID>ERX022947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62611, constructed from sample accession ERS004459 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004459" refname="712181-sc-2010-05-07-5287" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004459</PRIMARY_ID> <SUBMITTER_ID namespace="SC">712181-sc-2010-05-07-5287</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62611</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#3" center_name="SC" accession="ERX022948"> <IDENTIFIERS> <PRIMARY_ID>ERX022948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62613, constructed from sample accession ERS004460 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004460" refname="37007-sc-2010-05-07-5288" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004460</PRIMARY_ID> <SUBMITTER_ID namespace="SC">37007-sc-2010-05-07-5288</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62613</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#4" center_name="SC" accession="ERX022949"> <IDENTIFIERS> <PRIMARY_ID>ERX022949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62615, constructed from sample accession ERS004465 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence TGACCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004465" refname="43407-sc-2010-05-07-5289" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004465</PRIMARY_ID> <SUBMITTER_ID namespace="SC">43407-sc-2010-05-07-5289</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62615</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="5" max_mismatch="1" match_edge="end">TGACCA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#5" center_name="SC" accession="ERX022950"> <IDENTIFIERS> <PRIMARY_ID>ERX022950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62617, constructed from sample accession ERS004462 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004462" refname="92107-sc-2010-05-07-5290" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004462</PRIMARY_ID> <SUBMITTER_ID namespace="SC">92107-sc-2010-05-07-5290</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62617</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#6" center_name="SC" accession="ERX022951"> <IDENTIFIERS> <PRIMARY_ID>ERX022951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62619, constructed from sample accession ERS004463 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004463" refname="72307-sc-2010-05-07-5291" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004463</PRIMARY_ID> <SUBMITTER_ID namespace="SC">72307-sc-2010-05-07-5291</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62619</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#7" center_name="SC" accession="ERX022952"> <IDENTIFIERS> <PRIMARY_ID>ERX022952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62621, constructed from sample accession ERS004464 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004464" refname="101807-sc-2010-05-07-5292" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004464</PRIMARY_ID> <SUBMITTER_ID namespace="SC">101807-sc-2010-05-07-5292</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62621</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#8" center_name="SC" accession="ERX022953"> <IDENTIFIERS> <PRIMARY_ID>ERX022953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62623, constructed from sample accession ERS004466 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004466" refname="1091-sc-2010-05-07-5293" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004466</PRIMARY_ID> <SUBMITTER_ID namespace="SC">1091-sc-2010-05-07-5293</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62623</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#9" center_name="SC" accession="ERX022954"> <IDENTIFIERS> <PRIMARY_ID>ERX022954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62625, constructed from sample accession ERS004470 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004470" refname="40302-sc-2010-05-07-5294" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004470</PRIMARY_ID> <SUBMITTER_ID namespace="SC">40302-sc-2010-05-07-5294</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62625</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3888_8#10" center_name="SC" accession="ERX022955"> <IDENTIFIERS> <PRIMARY_ID>ERX022955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3888_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62627, constructed from sample accession ERS004467 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3888_8). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004467" refname="73002-sc-2010-05-07-5295" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004467</PRIMARY_ID> <SUBMITTER_ID namespace="SC">73002-sc-2010-05-07-5295</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62627</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="209" NOMINAL_SDEV="54"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#1" center_name="SC" accession="ERX022956"> <IDENTIFIERS> <PRIMARY_ID>ERX022956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62629, constructed from sample accession ERS004468 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004468" refname="183902-sc-2010-05-07-5296" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">183902-sc-2010-05-07-5296</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62629</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="5" max_mismatch="1" match_edge="end">ATCACG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#2" center_name="SC" accession="ERX022957"> <IDENTIFIERS> <PRIMARY_ID>ERX022957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62631, constructed from sample accession ERS004469 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004469" refname="738357-sc-2010-05-07-5297" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">738357-sc-2010-05-07-5297</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62631</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="5" max_mismatch="1" match_edge="end">CGATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#3" center_name="SC" accession="ERX022958"> <IDENTIFIERS> <PRIMARY_ID>ERX022958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62633, constructed from sample accession ERS004471 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004471" refname="62607-sc-2010-05-07-5298" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">62607-sc-2010-05-07-5298</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62633</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="5" max_mismatch="1" match_edge="end">TTAGGC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#5" center_name="SC" accession="ERX022959"> <IDENTIFIERS> <PRIMARY_ID>ERX022959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62637, constructed from sample accession ERS004473 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004473" refname="270-sc-2010-05-07-5300" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">270-sc-2010-05-07-5300</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62637</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="5" max_mismatch="1" match_edge="end">ACAGTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#6" center_name="SC" accession="ERX022960"> <IDENTIFIERS> <PRIMARY_ID>ERX022960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62639, constructed from sample accession ERS004474 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004474" refname="474-sc-2010-05-07-5301" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">474-sc-2010-05-07-5301</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62639</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="5" max_mismatch="1" match_edge="end">GCCAAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#7" center_name="SC" accession="ERX022961"> <IDENTIFIERS> <PRIMARY_ID>ERX022961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62641, constructed from sample accession ERS004475 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004475" refname="63402-sc-2010-05-07-5302" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">63402-sc-2010-05-07-5302</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62641</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="5" max_mismatch="1" match_edge="end">CAGATC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#8" center_name="SC" accession="ERX022962"> <IDENTIFIERS> <PRIMARY_ID>ERX022962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62643, constructed from sample accession ERS004476 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004476" refname="27799-sc-2010-05-07-5303" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">27799-sc-2010-05-07-5303</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62643</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="5" max_mismatch="1" match_edge="end">ACTTGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#9" center_name="SC" accession="ERX022963"> <IDENTIFIERS> <PRIMARY_ID>ERX022963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62645, constructed from sample accession ERS004477 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004477" refname="96307-sc-2010-05-07-5304" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">96307-sc-2010-05-07-5304</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62645</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="5" max_mismatch="1" match_edge="end">GATCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_3948_5#10" center_name="SC" accession="ERX022964"> <IDENTIFIERS> <PRIMARY_ID>ERX022964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_3948_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000633" refname="Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Discovery_of_sequence_diversity_in_Staphylococcus_aureus_ST22_and_ST36-sc-2011-04-20T15:35:05Z-262</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 62647, constructed from sample accession ERS004478 for study accession ERP000633. This is part of an Illumina multiplexed sequencing run (3948_5). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004478" refname="56507-sc-2010-05-07-5305" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">56507-sc-2010-05-07-5305</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>62647</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="214" NOMINAL_SDEV="61"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>115</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="5" max_mismatch="1" match_edge="end">TAGCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>62</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>