<STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882323, constructed from sample accession ERS031956 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031956" refname="MS0036-sc-2011-04-20T12:03:45Z-1127062" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0036-sc-2011-04-20T12:03:45Z-1127062</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882323</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#15" center_name="SC" accession="ERX024365"> <IDENTIFIERS> <PRIMARY_ID>ERX024365</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882324, constructed from sample accession ERS031957 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031957" refname="MS0038-sc-2011-04-20T12:03:46Z-1127063" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0038-sc-2011-04-20T12:03:46Z-1127063</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882324</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#16" center_name="SC" accession="ERX024366"> <IDENTIFIERS> <PRIMARY_ID>ERX024366</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882325, constructed from sample accession ERS031958 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031958" refname="MS0041-sc-2011-04-20T12:03:46Z-1127064" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0041-sc-2011-04-20T12:03:46Z-1127064</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882325</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#17" center_name="SC" accession="ERX024367"> <IDENTIFIERS> <PRIMARY_ID>ERX024367</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882326, constructed from sample accession ERS031959 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031959" refname="MS0043-sc-2011-04-20T12:03:47Z-1127065" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0043-sc-2011-04-20T12:03:47Z-1127065</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882326</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#18" center_name="SC" accession="ERX024368"> <IDENTIFIERS> <PRIMARY_ID>ERX024368</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882327, constructed from sample accession ERS031960 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031960" refname="MS0047-sc-2011-04-20T12:03:47Z-1127066" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0047-sc-2011-04-20T12:03:47Z-1127066</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882327</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#19" center_name="SC" accession="ERX024369"> <IDENTIFIERS> <PRIMARY_ID>ERX024369</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882328, constructed from sample accession ERS031961 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031961" refname="MS0050-sc-2011-04-20T12:03:48Z-1127067" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0050-sc-2011-04-20T12:03:48Z-1127067</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882328</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#20" center_name="SC" accession="ERX024370"> <IDENTIFIERS> <PRIMARY_ID>ERX024370</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882329, constructed from sample accession ERS031962 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031962" refname="MS0052-sc-2011-04-20T12:03:49Z-1127068" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0052-sc-2011-04-20T12:03:49Z-1127068</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882329</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#21" center_name="SC" accession="ERX024371"> <IDENTIFIERS> <PRIMARY_ID>ERX024371</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882330, constructed from sample accession ERS031963 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031963" refname="MS0055-sc-2011-04-20T12:03:50Z-1127069" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0055-sc-2011-04-20T12:03:50Z-1127069</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882330</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#22" center_name="SC" accession="ERX024372"> <IDENTIFIERS> <PRIMARY_ID>ERX024372</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882331, constructed from sample accession ERS031964 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031964" refname="MS0059-sc-2011-04-20T12:03:51Z-1127070" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0059-sc-2011-04-20T12:03:51Z-1127070</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882331</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#1" center_name="SC" accession="ERX024373"> <IDENTIFIERS> <PRIMARY_ID>ERX024373</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868452, constructed from sample accession ERS031720 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031720" refname="10398-sc-2011-04-20T12:00:59Z-1126826" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031720</PRIMARY_ID> <SUBMITTER_ID namespace="SC">10398-sc-2011-04-20T12:00:59Z-1126826</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868452</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#2" center_name="SC" accession="ERX024374"> <IDENTIFIERS> <PRIMARY_ID>ERX024374</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868453, constructed from sample accession ERS031721 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031721" refname="20006-sc-2011-04-20T12:01:00Z-1126827" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031721</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20006-sc-2011-04-20T12:01:00Z-1126827</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868453</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#3" center_name="SC" accession="ERX024375"> <IDENTIFIERS> <PRIMARY_ID>ERX024375</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868454, constructed from sample accession ERS031722 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031722" refname="20021-sc-2011-04-20T12:01:00Z-1126828" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031722</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20021-sc-2011-04-20T12:01:00Z-1126828</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868454</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#4" center_name="SC" accession="ERX024376"> <IDENTIFIERS> <PRIMARY_ID>ERX024376</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868455, constructed from sample accession ERS031723 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031723" refname="20023-sc-2011-04-20T12:01:01Z-1126829" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031723</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20023-sc-2011-04-20T12:01:01Z-1126829</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868455</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#5" center_name="SC" accession="ERX024377"> <IDENTIFIERS> <PRIMARY_ID>ERX024377</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868456, constructed from sample accession ERS031724 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031724" refname="20037-sc-2011-04-20T12:01:01Z-1126830" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031724</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20037-sc-2011-04-20T12:01:01Z-1126830</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868456</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#6" center_name="SC" accession="ERX024378"> <IDENTIFIERS> <PRIMARY_ID>ERX024378</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868457, constructed from sample accession ERS031725 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031725" refname="20070-sc-2011-04-20T12:01:02Z-1126831" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031725</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20070-sc-2011-04-20T12:01:02Z-1126831</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868457</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#7" center_name="SC" accession="ERX024379"> <IDENTIFIERS> <PRIMARY_ID>ERX024379</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868458, constructed from sample accession ERS031726 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031726" refname="20094-sc-2011-04-20T12:01:03Z-1126832" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031726</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20094-sc-2011-04-20T12:01:03Z-1126832</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868458</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#8" center_name="SC" accession="ERX024380"> <IDENTIFIERS> <PRIMARY_ID>ERX024380</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868459, constructed from sample accession ERS031727 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031727" refname="20228-sc-2011-04-20T12:01:04Z-1126833" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031727</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20228-sc-2011-04-20T12:01:04Z-1126833</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868459</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#9" center_name="SC" accession="ERX024381"> <IDENTIFIERS> <PRIMARY_ID>ERX024381</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868460, constructed from sample accession ERS031728 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031728" refname="20261-sc-2011-04-20T12:01:06Z-1126834" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031728</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20261-sc-2011-04-20T12:01:06Z-1126834</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868460</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#10" center_name="SC" accession="ERX024382"> <IDENTIFIERS> <PRIMARY_ID>ERX024382</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868461, constructed from sample accession ERS031729 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031729" refname="20263-sc-2011-04-20T12:01:06Z-1126835" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031729</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20263-sc-2011-04-20T12:01:06Z-1126835</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868461</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#11" center_name="SC" accession="ERX024383"> <IDENTIFIERS> <PRIMARY_ID>ERX024383</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868462, constructed from sample accession ERS031730 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031730" refname="20343-sc-2011-04-20T12:01:07Z-1126836" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031730</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20343-sc-2011-04-20T12:01:07Z-1126836</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868462</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#12" center_name="SC" accession="ERX024384"> <IDENTIFIERS> <PRIMARY_ID>ERX024384</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868463, constructed from sample accession ERS031731 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031731" refname="30003-sc-2011-04-20T12:01:08Z-1126837" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031731</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30003-sc-2011-04-20T12:01:08Z-1126837</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868463</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#13" center_name="SC" accession="ERX024385"> <IDENTIFIERS> <PRIMARY_ID>ERX024385</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868464, constructed from sample accession ERS031732 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031732" refname="30008-sc-2011-04-20T12:01:08Z-1126838" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031732</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30008-sc-2011-04-20T12:01:08Z-1126838</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868464</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#14" center_name="SC" accession="ERX024386"> <IDENTIFIERS> <PRIMARY_ID>ERX024386</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868465, constructed from sample accession ERS031733 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031733" refname="30010-sc-2011-04-20T12:01:10Z-1126839" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30010-sc-2011-04-20T12:01:10Z-1126839</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868465</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#15" center_name="SC" accession="ERX024387"> <IDENTIFIERS> <PRIMARY_ID>ERX024387</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868466, constructed from sample accession ERS031734 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031734" refname="30037-sc-2011-04-20T12:01:10Z-1126840" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031734</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30037-sc-2011-04-20T12:01:10Z-1126840</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868466</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#16" center_name="SC" accession="ERX024388"> <IDENTIFIERS> <PRIMARY_ID>ERX024388</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868467, constructed from sample accession ERS031735 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031735" refname="30054-sc-2011-04-20T12:01:11Z-1126841" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031735</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30054-sc-2011-04-20T12:01:11Z-1126841</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868467</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#17" center_name="SC" accession="ERX024389"> <IDENTIFIERS> <PRIMARY_ID>ERX024389</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868468, constructed from sample accession ERS031736 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031736" refname="30059-sc-2011-04-20T12:01:11Z-1126842" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031736</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30059-sc-2011-04-20T12:01:11Z-1126842</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868468</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#18" center_name="SC" accession="ERX024390"> <IDENTIFIERS> <PRIMARY_ID>ERX024390</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868469, constructed from sample accession ERS031737 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031737" refname="30071-sc-2011-04-20T12:01:12Z-1126843" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031737</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30071-sc-2011-04-20T12:01:12Z-1126843</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868469</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#19" center_name="SC" accession="ERX024391"> <IDENTIFIERS> <PRIMARY_ID>ERX024391</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868470, constructed from sample accession ERS031738 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031738" refname="30073-sc-2011-04-20T12:01:13Z-1126844" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031738</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30073-sc-2011-04-20T12:01:13Z-1126844</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868470</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#20" center_name="SC" accession="ERX024392"> <IDENTIFIERS> <PRIMARY_ID>ERX024392</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868471, constructed from sample accession ERS031739 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031739" refname="30078-sc-2011-04-20T12:01:13Z-1126845" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031739</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30078-sc-2011-04-20T12:01:13Z-1126845</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868471</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#21" center_name="SC" accession="ERX024393"> <IDENTIFIERS> <PRIMARY_ID>ERX024393</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868472, constructed from sample accession ERS031740 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031740" refname="30100-sc-2011-04-20T12:01:14Z-1126846" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031740</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30100-sc-2011-04-20T12:01:14Z-1126846</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868472</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#22" center_name="SC" accession="ERX024394"> <IDENTIFIERS> <PRIMARY_ID>ERX024394</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868473, constructed from sample accession ERS031741 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031741" refname="30112-sc-2011-04-20T12:01:16Z-1126847" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031741</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30112-sc-2011-04-20T12:01:16Z-1126847</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868473</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#23" center_name="SC" accession="ERX024395"> <IDENTIFIERS> <PRIMARY_ID>ERX024395</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868474, constructed from sample accession ERS031742 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031742" refname="30124-sc-2011-04-20T12:01:17Z-1126848" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031742</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30124-sc-2011-04-20T12:01:17Z-1126848</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868474</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#1" center_name="SC" accession="ERX024396"> <IDENTIFIERS> <PRIMARY_ID>ERX024396</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868475, constructed from sample accession ERS031743 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031743" refname="30157-sc-2011-04-20T12:01:17Z-1126849" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031743</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30157-sc-2011-04-20T12:01:17Z-1126849</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868475</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#2" center_name="SC" accession="ERX024397"> <IDENTIFIERS> <PRIMARY_ID>ERX024397</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868476, constructed from sample accession ERS031744 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031744" refname="30162-sc-2011-04-20T12:01:18Z-1126850" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031744</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30162-sc-2011-04-20T12:01:18Z-1126850</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868476</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#3" center_name="SC" accession="ERX024398"> <IDENTIFIERS> <PRIMARY_ID>ERX024398</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868477, constructed from sample accession ERS031745 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031745" refname="30164-sc-2011-04-20T12:01:18Z-1126851" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031745</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30164-sc-2011-04-20T12:01:18Z-1126851</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868477</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#4" center_name="SC" accession="ERX024399"> <IDENTIFIERS> <PRIMARY_ID>ERX024399</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868478, constructed from sample accession ERS031746 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031746" refname="30169-sc-2011-04-20T12:01:19Z-1126852" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031746</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30169-sc-2011-04-20T12:01:19Z-1126852</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868478</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#5" center_name="SC" accession="ERX024400"> <IDENTIFIERS> <PRIMARY_ID>ERX024400</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868479, constructed from sample accession ERS031747 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031747" refname="30172-sc-2011-04-20T12:01:19Z-1126853" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031747</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30172-sc-2011-04-20T12:01:19Z-1126853</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868479</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#6" center_name="SC" accession="ERX024401"> <IDENTIFIERS> <PRIMARY_ID>ERX024401</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868480, constructed from sample accession ERS031748 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031748" refname="30174-sc-2011-04-20T12:01:21Z-1126854" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031748</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30174-sc-2011-04-20T12:01:21Z-1126854</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868480</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#7" center_name="SC" accession="ERX024402"> <IDENTIFIERS> <PRIMARY_ID>ERX024402</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868481, constructed from sample accession ERS031749 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031749" refname="30233-sc-2011-04-20T12:01:22Z-1126855" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031749</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30233-sc-2011-04-20T12:01:22Z-1126855</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868481</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#8" center_name="SC" accession="ERX024403"> <IDENTIFIERS> <PRIMARY_ID>ERX024403</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868482, constructed from sample accession ERS031750 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031750" refname="30293-sc-2011-04-20T12:01:22Z-1126856" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031750</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30293-sc-2011-04-20T12:01:22Z-1126856</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868482</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#9" center_name="SC" accession="ERX024404"> <IDENTIFIERS> <PRIMARY_ID>ERX024404</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868483, constructed from sample accession ERS031751 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031751" refname="30366-sc-2011-04-20T12:01:23Z-1126857" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031751</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30366-sc-2011-04-20T12:01:23Z-1126857</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868483</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#10" center_name="SC" accession="ERX024405"> <IDENTIFIERS> <PRIMARY_ID>ERX024405</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868484, constructed from sample accession ERS031752 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031752" refname="30371-sc-2011-04-20T12:01:24Z-1126858" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031752</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30371-sc-2011-04-20T12:01:24Z-1126858</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868484</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#11" center_name="SC" accession="ERX024406"> <IDENTIFIERS> <PRIMARY_ID>ERX024406</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868485, constructed from sample accession ERS031753 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031753" refname="30387-sc-2011-04-20T12:01:24Z-1126859" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031753</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30387-sc-2011-04-20T12:01:24Z-1126859</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868485</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#12" center_name="SC" accession="ERX024407"> <IDENTIFIERS> <PRIMARY_ID>ERX024407</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868486, constructed from sample accession ERS031754 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031754" refname="30450-sc-2011-04-20T12:01:25Z-1126860" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031754</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30450-sc-2011-04-20T12:01:25Z-1126860</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868486</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#13" center_name="SC" accession="ERX024408"> <IDENTIFIERS> <PRIMARY_ID>ERX024408</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868487, constructed from sample accession ERS031755 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031755" refname="30451-sc-2011-04-20T12:01:26Z-1126861" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031755</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30451-sc-2011-04-20T12:01:26Z-1126861</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868487</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#14" center_name="SC" accession="ERX024409"> <IDENTIFIERS> <PRIMARY_ID>ERX024409</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868488, constructed from sample accession ERS031756 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031756" refname="DE0010-sc-2011-04-20T12:01:27Z-1126862" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031756</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0010-sc-2011-04-20T12:01:27Z-1126862</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868488</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#15" center_name="SC" accession="ERX024410"> <IDENTIFIERS> <PRIMARY_ID>ERX024410</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868489, constructed from sample accession ERS031757 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031757" refname="DE0029-sc-2011-04-20T12:01:28Z-1126863" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031757</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0029-sc-2011-04-20T12:01:28Z-1126863</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868489</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#16" center_name="SC" accession="ERX024411"> <IDENTIFIERS> <PRIMARY_ID>ERX024411</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868490, constructed from sample accession ERS031758 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031758" refname="DE0030-sc-2011-04-20T12:01:28Z-1126864" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031758</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0030-sc-2011-04-20T12:01:28Z-1126864</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868490</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#17" center_name="SC" accession="ERX024412"> <IDENTIFIERS> <PRIMARY_ID>ERX024412</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868491, constructed from sample accession ERS031759 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031759" refname="DE0042-sc-2011-04-20T12:01:29Z-1126865" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031759</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0042-sc-2011-04-20T12:01:29Z-1126865</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868491</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#18" center_name="SC" accession="ERX024413"> <IDENTIFIERS> <PRIMARY_ID>ERX024413</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868492, constructed from sample accession ERS031760 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031760" refname="DE0088-sc-2011-04-20T12:01:29Z-1126866" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031760</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0088-sc-2011-04-20T12:01:29Z-1126866</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868492</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#19" center_name="SC" accession="ERX024414"> <IDENTIFIERS> <PRIMARY_ID>ERX024414</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868493, constructed from sample accession ERS031761 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031761" refname="DE0090-sc-2011-04-20T12:01:30Z-1126867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031761</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0090-sc-2011-04-20T12:01:30Z-1126867</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868493</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#20" center_name="SC" accession="ERX024415"> <IDENTIFIERS> <PRIMARY_ID>ERX024415</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868494, constructed from sample accession ERS031762 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031762" refname="DE0119-sc-2011-04-20T12:01:30Z-1126868" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031762</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0119-sc-2011-04-20T12:01:30Z-1126868</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868494</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#21" center_name="SC" accession="ERX024416"> <IDENTIFIERS> <PRIMARY_ID>ERX024416</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868495, constructed from sample accession ERS031763 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031763" refname="DE0174-sc-2011-04-20T12:01:32Z-1126869" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031763</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0174-sc-2011-04-20T12:01:32Z-1126869</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868495</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#22" center_name="SC" accession="ERX024417"> <IDENTIFIERS> <PRIMARY_ID>ERX024417</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868496, constructed from sample accession ERS031764 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031764" refname="DE0175-sc-2011-04-20T12:01:32Z-1126870" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031764</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0175-sc-2011-04-20T12:01:32Z-1126870</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868496</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#23" center_name="SC" accession="ERX024418"> <IDENTIFIERS> <PRIMARY_ID>ERX024418</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868497, constructed from sample accession ERS031765 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031765" refname="DE0184-sc-2011-04-20T12:01:33Z-1126871" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031765</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0184-sc-2011-04-20T12:01:33Z-1126871</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868497</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#1" center_name="SC" accession="ERX024419"> <IDENTIFIERS> <PRIMARY_ID>ERX024419</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868498, constructed from sample accession ERS031766 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031766" refname="DE0185-sc-2011-04-20T12:01:33Z-1126872" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031766</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0185-sc-2011-04-20T12:01:33Z-1126872</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868498</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#2" center_name="SC" accession="ERX024420"> <IDENTIFIERS> <PRIMARY_ID>ERX024420</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868499, constructed from sample accession ERS031767 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031767" refname="DE0195-sc-2011-04-20T12:01:34Z-1126873" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031767</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0195-sc-2011-04-20T12:01:34Z-1126873</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868499</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#3" center_name="SC" accession="ERX024421"> <IDENTIFIERS> <PRIMARY_ID>ERX024421</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868500, constructed from sample accession ERS031768 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031768" refname="DE0213-sc-2011-04-20T12:01:34Z-1126874" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031768</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0213-sc-2011-04-20T12:01:34Z-1126874</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868500</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#4" center_name="SC" accession="ERX024422"> <IDENTIFIERS> <PRIMARY_ID>ERX024422</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868501, constructed from sample accession ERS031769 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031769" refname="DE0224-sc-2011-04-20T12:01:35Z-1126875" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031769</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0224-sc-2011-04-20T12:01:35Z-1126875</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868501</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#5" center_name="SC" accession="ERX024423"> <IDENTIFIERS> <PRIMARY_ID>ERX024423</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868502, constructed from sample accession ERS031770 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031770" refname="DE0319-sc-2011-04-20T12:01:36Z-1126876" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031770</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0319-sc-2011-04-20T12:01:36Z-1126876</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868502</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#6" center_name="SC" accession="ERX024424"> <IDENTIFIERS> <PRIMARY_ID>ERX024424</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868503, constructed from sample accession ERS031771 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031771" refname="DE0350-sc-2011-04-20T12:01:37Z-1126877" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031771</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0350-sc-2011-04-20T12:01:37Z-1126877</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868503</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#7" center_name="SC" accession="ERX024425"> <IDENTIFIERS> <PRIMARY_ID>ERX024425</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868504, constructed from sample accession ERS031772 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031772" refname="DE0366-sc-2011-04-20T12:01:37Z-1126878" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031772</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0366-sc-2011-04-20T12:01:37Z-1126878</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868504</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#8" center_name="SC" accession="ERX024426"> <IDENTIFIERS> <PRIMARY_ID>ERX024426</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868505, constructed from sample accession ERS031773 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031773" refname="DE0438-sc-2011-04-20T12:01:38Z-1126879" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031773</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0438-sc-2011-04-20T12:01:38Z-1126879</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868505</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#9" center_name="SC" accession="ERX024427"> <IDENTIFIERS> <PRIMARY_ID>ERX024427</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868506, constructed from sample accession ERS031774 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031774" refname="DE0457-sc-2011-04-20T12:01:39Z-1126880" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031774</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0457-sc-2011-04-20T12:01:39Z-1126880</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868506</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#10" center_name="SC" accession="ERX024428"> <IDENTIFIERS> <PRIMARY_ID>ERX024428</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868507, constructed from sample accession ERS031775 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031775" refname="DE0569-sc-2011-04-20T12:01:39Z-1126881" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031775</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0569-sc-2011-04-20T12:01:39Z-1126881</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868507</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#11" center_name="SC" accession="ERX024429"> <IDENTIFIERS> <PRIMARY_ID>ERX024429</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868508, constructed from sample accession ERS031776 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031776" refname="DE0578-sc-2011-04-20T12:01:40Z-1126882" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031776</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0578-sc-2011-04-20T12:01:40Z-1126882</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868508</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#12" center_name="SC" accession="ERX024430"> <IDENTIFIERS> <PRIMARY_ID>ERX024430</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868509, constructed from sample accession ERS031777 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031777" refname="DE0614-sc-2011-04-20T12:01:41Z-1126883" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031777</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0614-sc-2011-04-20T12:01:41Z-1126883</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868509</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#13" center_name="SC" accession="ERX024431"> <IDENTIFIERS> <PRIMARY_ID>ERX024431</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868510, constructed from sample accession ERS031778 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031778" refname="DE0670-sc-2011-04-20T12:01:42Z-1126884" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031778</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0670-sc-2011-04-20T12:01:42Z-1126884</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868510</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#14" center_name="SC" accession="ERX024432"> <IDENTIFIERS> <PRIMARY_ID>ERX024432</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868511, constructed from sample accession ERS031779 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031779" refname="DE0692-sc-2011-04-20T12:01:42Z-1126885" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031779</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0692-sc-2011-04-20T12:01:42Z-1126885</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868511</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#15" center_name="SC" accession="ERX024433"> <IDENTIFIERS> <PRIMARY_ID>ERX024433</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868512, constructed from sample accession ERS031780 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031780" refname="DE0712-sc-2011-04-20T12:01:43Z-1126886" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0712-sc-2011-04-20T12:01:43Z-1126886</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868512</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#16" center_name="SC" accession="ERX024434"> <IDENTIFIERS> <PRIMARY_ID>ERX024434</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868513, constructed from sample accession ERS031781 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031781" refname="DE0721-sc-2011-04-20T12:01:44Z-1126887" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031781</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0721-sc-2011-04-20T12:01:44Z-1126887</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868513</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#17" center_name="SC" accession="ERX024435"> <IDENTIFIERS> <PRIMARY_ID>ERX024435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868514, constructed from sample accession ERS031782 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031782" refname="DE0804-sc-2011-04-20T12:01:44Z-1126888" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031782</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0804-sc-2011-04-20T12:01:44Z-1126888</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868514</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#18" center_name="SC" accession="ERX024436"> <IDENTIFIERS> <PRIMARY_ID>ERX024436</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868515, constructed from sample accession ERS031783 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031783" refname="DE0807-sc-2011-04-20T12:01:45Z-1126889" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031783</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0807-sc-2011-04-20T12:01:45Z-1126889</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868515</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#19" center_name="SC" accession="ERX024437"> <IDENTIFIERS> <PRIMARY_ID>ERX024437</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868516, constructed from sample accession ERS031784 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031784" refname="DE0874-sc-2011-04-20T12:01:45Z-1126890" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031784</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0874-sc-2011-04-20T12:01:45Z-1126890</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868516</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#20" center_name="SC" accession="ERX024438"> <IDENTIFIERS> <PRIMARY_ID>ERX024438</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868517, constructed from sample accession ERS031785 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031785" refname="DE1130-sc-2011-04-20T12:01:47Z-1126891" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031785</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1130-sc-2011-04-20T12:01:47Z-1126891</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868517</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#21" center_name="SC" accession="ERX024439"> <IDENTIFIERS> <PRIMARY_ID>ERX024439</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868518, constructed from sample accession ERS031786 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031786" refname="DE1173-sc-2011-04-20T12:01:48Z-1126892" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031786</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1173-sc-2011-04-20T12:01:48Z-1126892</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868518</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#22" center_name="SC" accession="ERX024440"> <IDENTIFIERS> <PRIMARY_ID>ERX024440</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868519, constructed from sample accession ERS031787 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031787" refname="DE1174-sc-2011-04-20T12:01:48Z-1126893" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031787</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1174-sc-2011-04-20T12:01:48Z-1126893</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868519</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#23" center_name="SC" accession="ERX024441"> <IDENTIFIERS> <PRIMARY_ID>ERX024441</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868520, constructed from sample accession ERS031788 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031788" refname="DE1179-sc-2011-04-20T12:01:49Z-1126894" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031788</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1179-sc-2011-04-20T12:01:49Z-1126894</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868520</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#1" center_name="SC" accession="ERX024442"> <IDENTIFIERS> <PRIMARY_ID>ERX024442</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874359, constructed from sample accession ERS031789 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031789" refname="DE1194-sc-2011-04-20T12:01:49Z-1126895" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031789</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1194-sc-2011-04-20T12:01:49Z-1126895</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874359</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#2" center_name="SC" accession="ERX024443"> <IDENTIFIERS> <PRIMARY_ID>ERX024443</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874360, constructed from sample accession ERS031790 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031790" refname="DE1244-sc-2011-04-20T12:01:50Z-1126896" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031790</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1244-sc-2011-04-20T12:01:50Z-1126896</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874360</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#3" center_name="SC" accession="ERX024444"> <IDENTIFIERS> <PRIMARY_ID>ERX024444</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874361, constructed from sample accession ERS031791 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031791" refname="DE1252-sc-2011-04-20T12:01:50Z-1126897" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031791</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1252-sc-2011-04-20T12:01:50Z-1126897</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874361</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#4" center_name="SC" accession="ERX024445"> <IDENTIFIERS> <PRIMARY_ID>ERX024445</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874362, constructed from sample accession ERS031792 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031792" refname="DE1279-sc-2011-04-20T12:01:52Z-1126898" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031792</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1279-sc-2011-04-20T12:01:52Z-1126898</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874362</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#5" center_name="SC" accession="ERX024446"> <IDENTIFIERS> <PRIMARY_ID>ERX024446</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874363, constructed from sample accession ERS031793 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031793" refname="DE1342-sc-2011-04-20T12:01:52Z-1126899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031793</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1342-sc-2011-04-20T12:01:52Z-1126899</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874363</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#6" center_name="SC" accession="ERX024447"> <IDENTIFIERS> <PRIMARY_ID>ERX024447</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874364, constructed from sample accession ERS031794 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031794" refname="DE1455-sc-2011-04-20T12:01:53Z-1126900" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031794</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1455-sc-2011-04-20T12:01:53Z-1126900</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874364</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#7" center_name="SC" accession="ERX024448"> <IDENTIFIERS> <PRIMARY_ID>ERX024448</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874365, constructed from sample accession ERS031795 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031795" refname="DE1461-sc-2011-04-20T12:01:54Z-1126901" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031795</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1461-sc-2011-04-20T12:01:54Z-1126901</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874365</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#8" center_name="SC" accession="ERX024449"> <IDENTIFIERS> <PRIMARY_ID>ERX024449</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874366, constructed from sample accession ERS031796 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031796" refname="DE1496-sc-2011-04-20T12:01:54Z-1126902" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031796</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1496-sc-2011-04-20T12:01:54Z-1126902</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874366</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#9" center_name="SC" accession="ERX024450"> <IDENTIFIERS> <PRIMARY_ID>ERX024450</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874367, constructed from sample accession ERS031797 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031797" refname="DE1512-sc-2011-04-20T12:01:55Z-1126903" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031797</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1512-sc-2011-04-20T12:01:55Z-1126903</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874367</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#10" center_name="SC" accession="ERX024451"> <IDENTIFIERS> <PRIMARY_ID>ERX024451</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874368, constructed from sample accession ERS031798 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031798" refname="EG0002-sc-2011-04-20T12:01:55Z-1126904" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031798</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0002-sc-2011-04-20T12:01:55Z-1126904</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874368</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#11" center_name="SC" accession="ERX024452"> <IDENTIFIERS> <PRIMARY_ID>ERX024452</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874369, constructed from sample accession ERS031799 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031799" refname="EG0006-sc-2011-04-20T12:01:57Z-1126905" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031799</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0006-sc-2011-04-20T12:01:57Z-1126905</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874369</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#12" center_name="SC" accession="ERX024453"> <IDENTIFIERS> <PRIMARY_ID>ERX024453</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874370, constructed from sample accession ERS031800 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031800" refname="EG0055-sc-2011-04-20T12:01:58Z-1126906" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031800</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0055-sc-2011-04-20T12:01:58Z-1126906</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874370</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#13" center_name="SC" accession="ERX024454"> <IDENTIFIERS> <PRIMARY_ID>ERX024454</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874371, constructed from sample accession ERS031801 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031801" refname="EG0059-sc-2011-04-20T12:01:58Z-1126907" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031801</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0059-sc-2011-04-20T12:01:58Z-1126907</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874371</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#14" center_name="SC" accession="ERX024455"> <IDENTIFIERS> <PRIMARY_ID>ERX024455</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874372, constructed from sample accession ERS031802 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031802" refname="EG0085-sc-2011-04-20T12:01:59Z-1126908" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031802</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0085-sc-2011-04-20T12:01:59Z-1126908</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874372</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#15" center_name="SC" accession="ERX024456"> <IDENTIFIERS> <PRIMARY_ID>ERX024456</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874373, constructed from sample accession ERS031803 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031803" refname="EG0134-sc-2011-04-20T12:01:59Z-1126909" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031803</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0134-sc-2011-04-20T12:01:59Z-1126909</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874373</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#16" center_name="SC" accession="ERX024457"> <IDENTIFIERS> <PRIMARY_ID>ERX024457</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874374, constructed from sample accession ERS031804 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031804" refname="EG0198-sc-2011-04-20T12:02:00Z-1126910" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031804</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0198-sc-2011-04-20T12:02:00Z-1126910</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874374</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#17" center_name="SC" accession="ERX024458"> <IDENTIFIERS> <PRIMARY_ID>ERX024458</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874375, constructed from sample accession ERS031805 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031805" refname="EG0257-sc-2011-04-20T12:02:01Z-1126911" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031805</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0257-sc-2011-04-20T12:02:01Z-1126911</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874375</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#18" center_name="SC" accession="ERX024459"> <IDENTIFIERS> <PRIMARY_ID>ERX024459</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874376, constructed from sample accession ERS031806 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031806" refname="EG0302-sc-2011-04-20T12:02:01Z-1126912" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031806</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0302-sc-2011-04-20T12:02:01Z-1126912</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874376</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#19" center_name="SC" accession="ERX024460"> <IDENTIFIERS> <PRIMARY_ID>ERX024460</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874377, constructed from sample accession ERS031807 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031807" refname="EG0305-sc-2011-04-20T12:02:03Z-1126913" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031807</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0305-sc-2011-04-20T12:02:03Z-1126913</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874377</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#20" center_name="SC" accession="ERX024461"> <IDENTIFIERS> <PRIMARY_ID>ERX024461</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874378, constructed from sample accession ERS031808 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031808" refname="EG0319-sc-2011-04-20T12:02:03Z-1126914" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031808</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0319-sc-2011-04-20T12:02:03Z-1126914</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874378</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#21" center_name="SC" accession="ERX024462"> <IDENTIFIERS> <PRIMARY_ID>ERX024462</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874379, constructed from sample accession ERS031809 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031809" refname="EG0329-sc-2011-04-20T12:02:04Z-1126915" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031809</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0329-sc-2011-04-20T12:02:04Z-1126915</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874379</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#22" center_name="SC" accession="ERX024463"> <IDENTIFIERS> <PRIMARY_ID>ERX024463</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874380, constructed from sample accession ERS031810 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031810" refname="EG0380-sc-2011-04-20T12:02:05Z-1126916" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031810</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0380-sc-2011-04-20T12:02:05Z-1126916</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#1" center_name="SC" accession="ERX024464"> <IDENTIFIERS> <PRIMARY_ID>ERX024464</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875153, constructed from sample accession ERS031811 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031811" refname="EG0387-sc-2011-04-20T12:02:05Z-1126917" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031811</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0387-sc-2011-04-20T12:02:05Z-1126917</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#2" center_name="SC" accession="ERX024465"> <IDENTIFIERS> <PRIMARY_ID>ERX024465</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875154, constructed from sample accession ERS031812 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031812" refname="EG0403-sc-2011-04-20T12:02:06Z-1126918" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031812</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0403-sc-2011-04-20T12:02:06Z-1126918</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#3" center_name="SC" accession="ERX024466"> <IDENTIFIERS> <PRIMARY_ID>ERX024466</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875155, constructed from sample accession ERS031813 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031813" refname="EG0412-sc-2011-04-20T12:02:07Z-1126919" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031813</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0412-sc-2011-04-20T12:02:07Z-1126919</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#4" center_name="SC" accession="ERX024467"> <IDENTIFIERS> <PRIMARY_ID>ERX024467</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875156, constructed from sample accession ERS031814 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031814" refname="EG0419-sc-2011-04-20T12:02:08Z-1126920" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031814</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0419-sc-2011-04-20T12:02:08Z-1126920</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#5" center_name="SC" accession="ERX024468"> <IDENTIFIERS> <PRIMARY_ID>ERX024468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875157, constructed from sample accession ERS031815 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031815" refname="EG0435-sc-2011-04-20T12:02:09Z-1126921" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031815</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0435-sc-2011-04-20T12:02:09Z-1126921</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#6" center_name="SC" accession="ERX024469"> <IDENTIFIERS> <PRIMARY_ID>ERX024469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875158, constructed from sample accession ERS031816 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031816" refname="EG0449-sc-2011-04-20T12:02:09Z-1126922" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031816</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0449-sc-2011-04-20T12:02:09Z-1126922</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#7" center_name="SC" accession="ERX024470"> <IDENTIFIERS> <PRIMARY_ID>ERX024470</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875159, constructed from sample accession ERS031817 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031817" refname="EG0461-sc-2011-04-20T12:02:10Z-1126923" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031817</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0461-sc-2011-04-20T12:02:10Z-1126923</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#8" center_name="SC" accession="ERX024471"> <IDENTIFIERS> <PRIMARY_ID>ERX024471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875160, constructed from sample accession ERS031818 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031818" refname="EG0469-sc-2011-04-20T12:02:10Z-1126924" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031818</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0469-sc-2011-04-20T12:02:10Z-1126924</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#9" center_name="SC" accession="ERX024472"> <IDENTIFIERS> <PRIMARY_ID>ERX024472</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875161, constructed from sample accession ERS031819 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031819" refname="EG0471-sc-2011-04-20T12:02:11Z-1126925" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031819</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0471-sc-2011-04-20T12:02:11Z-1126925</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#10" center_name="SC" accession="ERX024473"> <IDENTIFIERS> <PRIMARY_ID>ERX024473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875162, constructed from sample accession ERS031820 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031820" refname="EG0474-sc-2011-04-20T12:02:12Z-1126926" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031820</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0474-sc-2011-04-20T12:02:12Z-1126926</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#11" center_name="SC" accession="ERX024474"> <IDENTIFIERS> <PRIMARY_ID>ERX024474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875163, constructed from sample accession ERS031821 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031821" refname="EG1014-sc-2011-04-20T12:02:12Z-1126927" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031821</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1014-sc-2011-04-20T12:02:12Z-1126927</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#12" center_name="SC" accession="ERX024475"> <IDENTIFIERS> <PRIMARY_ID>ERX024475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875164, constructed from sample accession ERS031822 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031822" refname="EG1015-sc-2011-04-20T12:02:13Z-1126928" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031822</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1015-sc-2011-04-20T12:02:13Z-1126928</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#13" center_name="SC" accession="ERX024476"> <IDENTIFIERS> <PRIMARY_ID>ERX024476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875165, constructed from sample accession ERS031823 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031823" refname="EG1016-sc-2011-04-20T12:02:14Z-1126929" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031823</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1016-sc-2011-04-20T12:02:14Z-1126929</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#14" center_name="SC" accession="ERX024477"> <IDENTIFIERS> <PRIMARY_ID>ERX024477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875166, constructed from sample accession ERS031824 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031824" refname="EG1017-sc-2011-04-20T12:02:15Z-1126930" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031824</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1017-sc-2011-04-20T12:02:15Z-1126930</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#15" center_name="SC" accession="ERX024478"> <IDENTIFIERS> <PRIMARY_ID>ERX024478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875167, constructed from sample accession ERS031825 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031825" refname="EG1018-sc-2011-04-20T12:02:15Z-1126931" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031825</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1018-sc-2011-04-20T12:02:15Z-1126931</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#16" center_name="SC" accession="ERX024479"> <IDENTIFIERS> <PRIMARY_ID>ERX024479</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875168, constructed from sample accession ERS031826 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031826" refname="EG1019-sc-2011-04-20T12:02:16Z-1126932" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031826</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1019-sc-2011-04-20T12:02:16Z-1126932</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#17" center_name="SC" accession="ERX024480"> <IDENTIFIERS> <PRIMARY_ID>ERX024480</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875169, constructed from sample accession ERS031827 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031827" refname="EG1020-sc-2011-04-20T12:02:16Z-1126933" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031827</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1020-sc-2011-04-20T12:02:16Z-1126933</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#1" center_name="SC" accession="ERX024285"> <IDENTIFIERS> <PRIMARY_ID>ERX024285</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882083, constructed from sample accession ERS031877 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031877" refname="HUE49-sc-2011-04-20T12:02:50Z-1126983" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031877</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE49-sc-2011-04-20T12:02:50Z-1126983</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882083</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#18" center_name="SC" accession="ERX024481"> <IDENTIFIERS> <PRIMARY_ID>ERX024481</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875170, constructed from sample accession ERS031828 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031828" refname="EG1021-sc-2011-04-20T12:02:17Z-1126934" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031828</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1021-sc-2011-04-20T12:02:17Z-1126934</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875170</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#19" center_name="SC" accession="ERX024482"> <IDENTIFIERS> <PRIMARY_ID>ERX024482</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875171, constructed from sample accession ERS031829 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031829" refname="EG1022-sc-2011-04-20T12:02:18Z-1126935" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031829</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1022-sc-2011-04-20T12:02:18Z-1126935</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875171</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#20" center_name="SC" accession="ERX024483"> <IDENTIFIERS> <PRIMARY_ID>ERX024483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875172, constructed from sample accession ERS031830 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031830" refname="EG1023-sc-2011-04-20T12:02:19Z-1126936" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031830</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1023-sc-2011-04-20T12:02:19Z-1126936</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875172</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#21" center_name="SC" accession="ERX024484"> <IDENTIFIERS> <PRIMARY_ID>ERX024484</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875173, constructed from sample accession ERS031831 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031831" refname="EG1024-sc-2011-04-20T12:02:20Z-1126937" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031831</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1024-sc-2011-04-20T12:02:20Z-1126937</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875173</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#22" center_name="SC" accession="ERX024485"> <IDENTIFIERS> <PRIMARY_ID>ERX024485</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875174, constructed from sample accession ERS031832 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031832" refname="EG1025-sc-2011-04-20T12:02:20Z-1126938" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031832</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1025-sc-2011-04-20T12:02:20Z-1126938</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875174</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#1" center_name="SC" accession="ERX024486"> <IDENTIFIERS> <PRIMARY_ID>ERX024486</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875530, constructed from sample accession ERS031833 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031833" refname="EG1026-sc-2011-04-20T12:02:22Z-1126939" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031833</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1026-sc-2011-04-20T12:02:22Z-1126939</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875530</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#2" center_name="SC" accession="ERX024487"> <IDENTIFIERS> <PRIMARY_ID>ERX024487</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875531, constructed from sample accession ERS031834 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031834" refname="EG1027-sc-2011-04-20T12:02:22Z-1126940" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031834</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1027-sc-2011-04-20T12:02:22Z-1126940</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875531</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#3" center_name="SC" accession="ERX024488"> <IDENTIFIERS> <PRIMARY_ID>ERX024488</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875533, constructed from sample accession ERS031835 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031835" refname="EG1028-sc-2011-04-20T12:02:23Z-1126941" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031835</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1028-sc-2011-04-20T12:02:23Z-1126941</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875533</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#4" center_name="SC" accession="ERX024489"> <IDENTIFIERS> <PRIMARY_ID>ERX024489</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875534, constructed from sample accession ERS031836 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031836" refname="EG1029-sc-2011-04-20T12:02:24Z-1126942" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031836</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1029-sc-2011-04-20T12:02:24Z-1126942</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875534</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#5" center_name="SC" accession="ERX024490"> <IDENTIFIERS> <PRIMARY_ID>ERX024490</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875535, constructed from sample accession ERS031837 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031837" refname="HUE01-sc-2011-04-20T12:02:25Z-1126943" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031837</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE01-sc-2011-04-20T12:02:25Z-1126943</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875535</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#6" center_name="SC" accession="ERX024491"> <IDENTIFIERS> <PRIMARY_ID>ERX024491</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875537, constructed from sample accession ERS031838 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031838" refname="HUE02-sc-2011-04-20T12:02:25Z-1126944" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031838</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE02-sc-2011-04-20T12:02:25Z-1126944</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875537</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#7" center_name="SC" accession="ERX024492"> <IDENTIFIERS> <PRIMARY_ID>ERX024492</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875538, constructed from sample accession ERS031839 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031839" refname="HUE03-sc-2011-04-20T12:02:26Z-1126945" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031839</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE03-sc-2011-04-20T12:02:26Z-1126945</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875538</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#8" center_name="SC" accession="ERX024493"> <IDENTIFIERS> <PRIMARY_ID>ERX024493</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875539, constructed from sample accession ERS031840 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031840" refname="HUE04-sc-2011-04-20T12:02:26Z-1126946" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031840</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE04-sc-2011-04-20T12:02:26Z-1126946</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875539</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#2" center_name="SC" accession="ERX024286"> <IDENTIFIERS> <PRIMARY_ID>ERX024286</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882084, constructed from sample accession ERS031878 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031878" refname="HUE50-sc-2011-04-20T12:02:51Z-1126984" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031878</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE50-sc-2011-04-20T12:02:51Z-1126984</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882084</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#3" center_name="SC" accession="ERX024287"> <IDENTIFIERS> <PRIMARY_ID>ERX024287</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882085, constructed from sample accession ERS031879 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031879" refname="HUE53-sc-2011-04-20T12:02:51Z-1126985" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031879</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE53-sc-2011-04-20T12:02:51Z-1126985</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882085</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#4" center_name="SC" accession="ERX024288"> <IDENTIFIERS> <PRIMARY_ID>ERX024288</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882086, constructed from sample accession ERS031880 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031880" refname="HUE54-sc-2011-04-20T12:02:52Z-1126986" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031880</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE54-sc-2011-04-20T12:02:52Z-1126986</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882086</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#5" center_name="SC" accession="ERX024289"> <IDENTIFIERS> <PRIMARY_ID>ERX024289</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882087, constructed from sample accession ERS031881 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031881" refname="HUE55-sc-2011-04-20T12:02:53Z-1126987" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031881</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE55-sc-2011-04-20T12:02:53Z-1126987</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882087</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#6" center_name="SC" accession="ERX024290"> <IDENTIFIERS> <PRIMARY_ID>ERX024290</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882088, constructed from sample accession ERS031882 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031882" refname="HUE56-sc-2011-04-20T12:02:54Z-1126988" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031882</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE56-sc-2011-04-20T12:02:54Z-1126988</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882088</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#7" center_name="SC" accession="ERX024291"> <IDENTIFIERS> <PRIMARY_ID>ERX024291</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882089, constructed from sample accession ERS031883 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031883" refname="HUE57-sc-2011-04-20T12:02:54Z-1126989" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031883</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE57-sc-2011-04-20T12:02:54Z-1126989</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882089</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#8" center_name="SC" accession="ERX024292"> <IDENTIFIERS> <PRIMARY_ID>ERX024292</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882090, constructed from sample accession ERS031884 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031884" refname="HUE58-sc-2011-04-20T12:02:55Z-1126990" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031884</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE58-sc-2011-04-20T12:02:55Z-1126990</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882090</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#9" center_name="SC" accession="ERX024293"> <IDENTIFIERS> <PRIMARY_ID>ERX024293</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882091, constructed from sample accession ERS031885 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031885" refname="HUE60-sc-2011-04-20T12:02:55Z-1126991" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031885</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE60-sc-2011-04-20T12:02:55Z-1126991</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882091</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#10" center_name="SC" accession="ERX024294"> <IDENTIFIERS> <PRIMARY_ID>ERX024294</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882092, constructed from sample accession ERS031886 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031886" refname="HUE61-sc-2011-04-20T12:02:56Z-1126992" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031886</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE61-sc-2011-04-20T12:02:56Z-1126992</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882092</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#11" center_name="SC" accession="ERX024295"> <IDENTIFIERS> <PRIMARY_ID>ERX024295</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882093, constructed from sample accession ERS031887 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031887" refname="HUE62-sc-2011-04-20T12:02:56Z-1126993" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031887</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE62-sc-2011-04-20T12:02:56Z-1126993</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882093</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#12" center_name="SC" accession="ERX024296"> <IDENTIFIERS> <PRIMARY_ID>ERX024296</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882094, constructed from sample accession ERS031888 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031888" refname="HUE63-sc-2011-04-20T12:02:58Z-1126994" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031888</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE63-sc-2011-04-20T12:02:58Z-1126994</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882094</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#13" center_name="SC" accession="ERX024297"> <IDENTIFIERS> <PRIMARY_ID>ERX024297</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882095, constructed from sample accession ERS031889 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031889" refname="HUE64-sc-2011-04-20T12:02:58Z-1126995" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031889</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE64-sc-2011-04-20T12:02:58Z-1126995</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882095</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#14" center_name="SC" accession="ERX024298"> <IDENTIFIERS> <PRIMARY_ID>ERX024298</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882096, constructed from sample accession ERS031890 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031890" refname="HUE65-sc-2011-04-20T12:02:59Z-1126996" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031890</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE65-sc-2011-04-20T12:02:59Z-1126996</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882096</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#9" center_name="SC" accession="ERX024494"> <IDENTIFIERS> <PRIMARY_ID>ERX024494</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875540, constructed from sample accession ERS031841 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031841" refname="HUE05-sc-2011-04-20T12:02:27Z-1126947" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031841</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE05-sc-2011-04-20T12:02:27Z-1126947</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875540</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#10" center_name="SC" accession="ERX024495"> <IDENTIFIERS> <PRIMARY_ID>ERX024495</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875541, constructed from sample accession ERS031842 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031842" refname="HUE06-sc-2011-04-20T12:02:27Z-1126948" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031842</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE06-sc-2011-04-20T12:02:27Z-1126948</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875541</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#11" center_name="SC" accession="ERX024496"> <IDENTIFIERS> <PRIMARY_ID>ERX024496</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875544, constructed from sample accession ERS031843 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031843" refname="HUE07-sc-2011-04-20T12:02:28Z-1126949" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031843</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE07-sc-2011-04-20T12:02:28Z-1126949</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875544</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#12" center_name="SC" accession="ERX024497"> <IDENTIFIERS> <PRIMARY_ID>ERX024497</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875545, constructed from sample accession ERS031844 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031844" refname="HUE08-sc-2011-04-20T12:02:29Z-1126950" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031844</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE08-sc-2011-04-20T12:02:29Z-1126950</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875545</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#13" center_name="SC" accession="ERX024498"> <IDENTIFIERS> <PRIMARY_ID>ERX024498</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875547, constructed from sample accession ERS031845 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031845" refname="HUE09-sc-2011-04-20T12:02:30Z-1126951" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031845</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE09-sc-2011-04-20T12:02:30Z-1126951</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875547</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#14" center_name="SC" accession="ERX024499"> <IDENTIFIERS> <PRIMARY_ID>ERX024499</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875548, constructed from sample accession ERS031846 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031846" refname="HUE10-sc-2011-04-20T12:02:30Z-1126952" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031846</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE10-sc-2011-04-20T12:02:30Z-1126952</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875548</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#15" center_name="SC" accession="ERX024500"> <IDENTIFIERS> <PRIMARY_ID>ERX024500</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875550, constructed from sample accession ERS031847 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031847" refname="HUE12-sc-2011-04-20T12:02:31Z-1126953" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031847</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE12-sc-2011-04-20T12:02:31Z-1126953</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875550</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#16" center_name="SC" accession="ERX024501"> <IDENTIFIERS> <PRIMARY_ID>ERX024501</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875551, constructed from sample accession ERS031848 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031848" refname="HUE13-sc-2011-04-20T12:02:31Z-1126954" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031848</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE13-sc-2011-04-20T12:02:31Z-1126954</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875551</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#17" center_name="SC" accession="ERX024502"> <IDENTIFIERS> <PRIMARY_ID>ERX024502</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875552, constructed from sample accession ERS031849 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031849" refname="HUE14-sc-2011-04-20T12:02:32Z-1126955" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031849</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE14-sc-2011-04-20T12:02:32Z-1126955</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875552</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#18" center_name="SC" accession="ERX024503"> <IDENTIFIERS> <PRIMARY_ID>ERX024503</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875553, constructed from sample accession ERS031850 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031850" refname="HUE15-sc-2011-04-20T12:02:32Z-1126956" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031850</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE15-sc-2011-04-20T12:02:32Z-1126956</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875553</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#19" center_name="SC" accession="ERX024504"> <IDENTIFIERS> <PRIMARY_ID>ERX024504</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875554, constructed from sample accession ERS031851 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031851" refname="HUE16-sc-2011-04-20T12:02:33Z-1126957" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031851</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE16-sc-2011-04-20T12:02:33Z-1126957</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875554</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#20" center_name="SC" accession="ERX024505"> <IDENTIFIERS> <PRIMARY_ID>ERX024505</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875555, constructed from sample accession ERS031852 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031852" refname="HUE17-sc-2011-04-20T12:02:34Z-1126958" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031852</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE17-sc-2011-04-20T12:02:34Z-1126958</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875555</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#21" center_name="SC" accession="ERX024506"> <IDENTIFIERS> <PRIMARY_ID>ERX024506</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875556, constructed from sample accession ERS031853 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031853" refname="HUE18-sc-2011-04-20T12:02:35Z-1126959" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031853</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE18-sc-2011-04-20T12:02:35Z-1126959</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875556</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#15" center_name="SC" accession="ERX024299"> <IDENTIFIERS> <PRIMARY_ID>ERX024299</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882097, constructed from sample accession ERS031891 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031891" refname="HUE66-sc-2011-04-20T12:02:59Z-1126997" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031891</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE66-sc-2011-04-20T12:02:59Z-1126997</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882097</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#16" center_name="SC" accession="ERX024300"> <IDENTIFIERS> <PRIMARY_ID>ERX024300</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882098, constructed from sample accession ERS031892 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031892" refname="HUE67-sc-2011-04-20T12:03:00Z-1126998" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031892</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE67-sc-2011-04-20T12:03:00Z-1126998</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882098</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#17" center_name="SC" accession="ERX024301"> <IDENTIFIERS> <PRIMARY_ID>ERX024301</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882099, constructed from sample accession ERS031893 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031893" refname="HUE68-sc-2011-04-20T12:03:00Z-1126999" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031893</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE68-sc-2011-04-20T12:03:00Z-1126999</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882099</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#18" center_name="SC" accession="ERX024302"> <IDENTIFIERS> <PRIMARY_ID>ERX024302</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882100, constructed from sample accession ERS031894 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031894" refname="KH01-sc-2011-04-20T12:03:01Z-1127000" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031894</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH01-sc-2011-04-20T12:03:01Z-1127000</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882100</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#19" center_name="SC" accession="ERX024303"> <IDENTIFIERS> <PRIMARY_ID>ERX024303</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882101, constructed from sample accession ERS031895 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031895" refname="KH02-sc-2011-04-20T12:03:02Z-1127001" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031895</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH02-sc-2011-04-20T12:03:02Z-1127001</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882101</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#20" center_name="SC" accession="ERX024304"> <IDENTIFIERS> <PRIMARY_ID>ERX024304</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882102, constructed from sample accession ERS031896 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031896" refname="KH04-sc-2011-04-20T12:03:03Z-1127002" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031896</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH04-sc-2011-04-20T12:03:03Z-1127002</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882102</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#21" center_name="SC" accession="ERX024305"> <IDENTIFIERS> <PRIMARY_ID>ERX024305</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882103, constructed from sample accession ERS031897 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031897" refname="KH05-sc-2011-04-20T12:03:03Z-1127003" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031897</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH05-sc-2011-04-20T12:03:03Z-1127003</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882103</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#22" center_name="SC" accession="ERX024306"> <IDENTIFIERS> <PRIMARY_ID>ERX024306</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882104, constructed from sample accession ERS031898 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031898" refname="KH06-sc-2011-04-20T12:03:04Z-1127004" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031898</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH06-sc-2011-04-20T12:03:04Z-1127004</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882104</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#1" center_name="SC" accession="ERX024307"> <IDENTIFIERS> <PRIMARY_ID>ERX024307</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882138, constructed from sample accession ERS031899 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031899" refname="KH07-sc-2011-04-20T12:03:04Z-1127005" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031899</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH07-sc-2011-04-20T12:03:04Z-1127005</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882138</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#2" center_name="SC" accession="ERX024308"> <IDENTIFIERS> <PRIMARY_ID>ERX024308</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882151, constructed from sample accession ERS031900 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031900" refname="KH09-sc-2011-04-20T12:03:05Z-1127006" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031900</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH09-sc-2011-04-20T12:03:05Z-1127006</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882151</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#3" center_name="SC" accession="ERX024309"> <IDENTIFIERS> <PRIMARY_ID>ERX024309</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882152, constructed from sample accession ERS031901 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031901" refname="KH10-sc-2011-04-20T12:03:05Z-1127007" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031901</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH10-sc-2011-04-20T12:03:05Z-1127007</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882152</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#4" center_name="SC" accession="ERX024310"> <IDENTIFIERS> <PRIMARY_ID>ERX024310</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882153, constructed from sample accession ERS031902 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031902" refname="KH11-sc-2011-04-20T12:03:06Z-1127008" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031902</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH11-sc-2011-04-20T12:03:06Z-1127008</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#5" center_name="SC" accession="ERX024311"> <IDENTIFIERS> <PRIMARY_ID>ERX024311</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882154, constructed from sample accession ERS031903 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031903" refname="KH12-sc-2011-04-20T12:03:07Z-1127009" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031903</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH12-sc-2011-04-20T12:03:07Z-1127009</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#22" center_name="SC" accession="ERX024507"> <IDENTIFIERS> <PRIMARY_ID>ERX024507</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875557, constructed from sample accession ERS031854 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031854" refname="HUE19-sc-2011-04-20T12:02:35Z-1126960" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031854</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE19-sc-2011-04-20T12:02:35Z-1126960</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875557</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#1" center_name="SC" accession="ERX024508"> <IDENTIFIERS> <PRIMARY_ID>ERX024508</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875581, constructed from sample accession ERS031855 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031855" refname="HUE20-sc-2011-04-20T12:02:36Z-1126961" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031855</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE20-sc-2011-04-20T12:02:36Z-1126961</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875581</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#2" center_name="SC" accession="ERX024509"> <IDENTIFIERS> <PRIMARY_ID>ERX024509</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875582, constructed from sample accession ERS031856 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031856" refname="HUE21-sc-2011-04-20T12:02:36Z-1126962" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031856</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE21-sc-2011-04-20T12:02:36Z-1126962</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875582</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#3" center_name="SC" accession="ERX024510"> <IDENTIFIERS> <PRIMARY_ID>ERX024510</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875583, constructed from sample accession ERS031857 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031857" refname="HUE22-sc-2011-04-20T12:02:37Z-1126963" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031857</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE22-sc-2011-04-20T12:02:37Z-1126963</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875583</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#4" center_name="SC" accession="ERX024511"> <IDENTIFIERS> <PRIMARY_ID>ERX024511</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875584, constructed from sample accession ERS031858 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031858" refname="HUE23-sc-2011-04-20T12:02:38Z-1126964" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031858</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE23-sc-2011-04-20T12:02:38Z-1126964</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875584</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#5" center_name="SC" accession="ERX024512"> <IDENTIFIERS> <PRIMARY_ID>ERX024512</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875585, constructed from sample accession ERS031859 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031859" refname="HUE24-sc-2011-04-20T12:02:39Z-1126965" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031859</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE24-sc-2011-04-20T12:02:39Z-1126965</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875585</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#6" center_name="SC" accession="ERX024513"> <IDENTIFIERS> <PRIMARY_ID>ERX024513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875586, constructed from sample accession ERS031860 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031860" refname="HUE25-sc-2011-04-20T12:02:39Z-1126966" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031860</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE25-sc-2011-04-20T12:02:39Z-1126966</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875586</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#7" center_name="SC" accession="ERX024514"> <IDENTIFIERS> <PRIMARY_ID>ERX024514</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875587, constructed from sample accession ERS031861 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031861" refname="HUE26-sc-2011-04-20T12:02:40Z-1126967" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031861</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE26-sc-2011-04-20T12:02:40Z-1126967</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875587</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#8" center_name="SC" accession="ERX024515"> <IDENTIFIERS> <PRIMARY_ID>ERX024515</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875588, constructed from sample accession ERS031862 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031862" refname="HUE27-sc-2011-04-20T12:02:40Z-1126968" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031862</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE27-sc-2011-04-20T12:02:40Z-1126968</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875588</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#9" center_name="SC" accession="ERX024516"> <IDENTIFIERS> <PRIMARY_ID>ERX024516</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875589, constructed from sample accession ERS031863 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031863" refname="HUE29-sc-2011-04-20T12:02:41Z-1126969" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031863</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE29-sc-2011-04-20T12:02:41Z-1126969</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875589</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#10" center_name="SC" accession="ERX024517"> <IDENTIFIERS> <PRIMARY_ID>ERX024517</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875590, constructed from sample accession ERS031864 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031864" refname="HUE30-sc-2011-04-20T12:02:41Z-1126970" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031864</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE30-sc-2011-04-20T12:02:41Z-1126970</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875590</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#11" center_name="SC" accession="ERX024518"> <IDENTIFIERS> <PRIMARY_ID>ERX024518</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875591, constructed from sample accession ERS031865 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031865" refname="HUE31-sc-2011-04-20T12:02:42Z-1126971" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031865</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE31-sc-2011-04-20T12:02:42Z-1126971</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875591</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#12" center_name="SC" accession="ERX024519"> <IDENTIFIERS> <PRIMARY_ID>ERX024519</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875592, constructed from sample accession ERS031866 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031866" refname="HUE32-sc-2011-04-20T12:02:43Z-1126972" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031866</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE32-sc-2011-04-20T12:02:43Z-1126972</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875592</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#6" center_name="SC" accession="ERX024312"> <IDENTIFIERS> <PRIMARY_ID>ERX024312</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882155, constructed from sample accession ERS031904 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031904" refname="KH13-sc-2011-04-20T12:03:08Z-1127010" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031904</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH13-sc-2011-04-20T12:03:08Z-1127010</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#7" center_name="SC" accession="ERX024313"> <IDENTIFIERS> <PRIMARY_ID>ERX024313</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882156, constructed from sample accession ERS031905 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031905" refname="KH14-sc-2011-04-20T12:03:08Z-1127011" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031905</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH14-sc-2011-04-20T12:03:08Z-1127011</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#8" center_name="SC" accession="ERX024314"> <IDENTIFIERS> <PRIMARY_ID>ERX024314</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882157, constructed from sample accession ERS031906 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031906" refname="KH15-sc-2011-04-20T12:03:09Z-1127012" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031906</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH15-sc-2011-04-20T12:03:09Z-1127012</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#9" center_name="SC" accession="ERX024315"> <IDENTIFIERS> <PRIMARY_ID>ERX024315</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882158, constructed from sample accession ERS031907 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031907" refname="KH16-sc-2011-04-20T12:03:09Z-1127013" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031907</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH16-sc-2011-04-20T12:03:09Z-1127013</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#10" center_name="SC" accession="ERX024316"> <IDENTIFIERS> <PRIMARY_ID>ERX024316</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882159, constructed from sample accession ERS031908 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031908" refname="KH17-sc-2011-04-20T12:03:10Z-1127014" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031908</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH17-sc-2011-04-20T12:03:10Z-1127014</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#11" center_name="SC" accession="ERX024317"> <IDENTIFIERS> <PRIMARY_ID>ERX024317</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882160, constructed from sample accession ERS031909 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031909" refname="KH18-sc-2011-04-20T12:03:12Z-1127015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031909</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH18-sc-2011-04-20T12:03:12Z-1127015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#12" center_name="SC" accession="ERX024318"> <IDENTIFIERS> <PRIMARY_ID>ERX024318</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882161, constructed from sample accession ERS031910 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031910" refname="KH19-sc-2011-04-20T12:03:13Z-1127016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031910</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH19-sc-2011-04-20T12:03:13Z-1127016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#13" center_name="SC" accession="ERX024319"> <IDENTIFIERS> <PRIMARY_ID>ERX024319</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882162, constructed from sample accession ERS031911 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031911" refname="KH20-sc-2011-04-20T12:03:14Z-1127017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031911</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH20-sc-2011-04-20T12:03:14Z-1127017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#14" center_name="SC" accession="ERX024320"> <IDENTIFIERS> <PRIMARY_ID>ERX024320</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882163, constructed from sample accession ERS031912 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031912" refname="KH21-sc-2011-04-20T12:03:14Z-1127018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031912</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH21-sc-2011-04-20T12:03:14Z-1127018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#15" center_name="SC" accession="ERX024321"> <IDENTIFIERS> <PRIMARY_ID>ERX024321</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882164, constructed from sample accession ERS031913 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031913" refname="KH23-sc-2011-04-20T12:03:15Z-1127019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031913</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH23-sc-2011-04-20T12:03:15Z-1127019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#16" center_name="SC" accession="ERX024322"> <IDENTIFIERS> <PRIMARY_ID>ERX024322</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882165, constructed from sample accession ERS031914 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031914" refname="KH24-sc-2011-04-20T12:03:15Z-1127020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031914</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH24-sc-2011-04-20T12:03:15Z-1127020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#17" center_name="SC" accession="ERX024323"> <IDENTIFIERS> <PRIMARY_ID>ERX024323</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882166, constructed from sample accession ERS031915 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031915" refname="KH25-sc-2011-04-20T12:03:16Z-1127021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031915</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH25-sc-2011-04-20T12:03:16Z-1127021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#18" center_name="SC" accession="ERX024324"> <IDENTIFIERS> <PRIMARY_ID>ERX024324</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882167, constructed from sample accession ERS031916 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031916" refname="KH26-sc-2011-04-20T12:03:16Z-1127022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031916</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH26-sc-2011-04-20T12:03:16Z-1127022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#13" center_name="SC" accession="ERX024520"> <IDENTIFIERS> <PRIMARY_ID>ERX024520</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875593, constructed from sample accession ERS031867 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031867" refname="HUE33-sc-2011-04-20T12:02:44Z-1126973" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031867</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE33-sc-2011-04-20T12:02:44Z-1126973</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875593</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#14" center_name="SC" accession="ERX024521"> <IDENTIFIERS> <PRIMARY_ID>ERX024521</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875594, constructed from sample accession ERS031868 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031868" refname="HUE34-sc-2011-04-20T12:02:44Z-1126974" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031868</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE34-sc-2011-04-20T12:02:44Z-1126974</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875594</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#15" center_name="SC" accession="ERX024522"> <IDENTIFIERS> <PRIMARY_ID>ERX024522</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875595, constructed from sample accession ERS031869 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031869" refname="HUE35-sc-2011-04-20T12:02:45Z-1126975" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031869</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE35-sc-2011-04-20T12:02:45Z-1126975</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875595</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#16" center_name="SC" accession="ERX024523"> <IDENTIFIERS> <PRIMARY_ID>ERX024523</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875596, constructed from sample accession ERS031870 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031870" refname="HUE36-sc-2011-04-20T12:02:45Z-1126976" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031870</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE36-sc-2011-04-20T12:02:45Z-1126976</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875596</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#17" center_name="SC" accession="ERX024524"> <IDENTIFIERS> <PRIMARY_ID>ERX024524</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875597, constructed from sample accession ERS031871 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031871" refname="HUE40-sc-2011-04-20T12:02:46Z-1126977" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031871</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE40-sc-2011-04-20T12:02:46Z-1126977</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875597</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#18" center_name="SC" accession="ERX024525"> <IDENTIFIERS> <PRIMARY_ID>ERX024525</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875598, constructed from sample accession ERS031872 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031872" refname="HUE42-sc-2011-04-20T12:02:46Z-1126978" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031872</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE42-sc-2011-04-20T12:02:46Z-1126978</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875598</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#19" center_name="SC" accession="ERX024526"> <IDENTIFIERS> <PRIMARY_ID>ERX024526</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875599, constructed from sample accession ERS031873 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031873" refname="HUE43-sc-2011-04-20T12:02:48Z-1126979" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031873</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE43-sc-2011-04-20T12:02:48Z-1126979</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875599</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#20" center_name="SC" accession="ERX024527"> <IDENTIFIERS> <PRIMARY_ID>ERX024527</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875600, constructed from sample accession ERS031874 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031874" refname="HUE46-sc-2011-04-20T12:02:49Z-1126980" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031874</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE46-sc-2011-04-20T12:02:49Z-1126980</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875600</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#21" center_name="SC" accession="ERX024528"> <IDENTIFIERS> <PRIMARY_ID>ERX024528</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875601, constructed from sample accession ERS031875 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031875" refname="HUE47-sc-2011-04-20T12:02:49Z-1126981" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031875</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE47-sc-2011-04-20T12:02:49Z-1126981</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875601</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#22" center_name="SC" accession="ERX024529"> <IDENTIFIERS> <PRIMARY_ID>ERX024529</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875602, constructed from sample accession ERS031876 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031876" refname="HUE48-sc-2011-04-20T12:02:50Z-1126982" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031876</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE48-sc-2011-04-20T12:02:50Z-1126982</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875602</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#19" center_name="SC" accession="ERX024325"> <IDENTIFIERS> <PRIMARY_ID>ERX024325</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882168, constructed from sample accession ERS031917 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031917" refname="KH27-sc-2011-04-20T12:03:18Z-1127023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031917</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH27-sc-2011-04-20T12:03:18Z-1127023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#20" center_name="SC" accession="ERX024326"> <IDENTIFIERS> <PRIMARY_ID>ERX024326</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882169, constructed from sample accession ERS031918 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031918" refname="KH28-sc-2011-04-20T12:03:19Z-1127024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031918</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH28-sc-2011-04-20T12:03:19Z-1127024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#21" center_name="SC" accession="ERX024327"> <IDENTIFIERS> <PRIMARY_ID>ERX024327</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882170, constructed from sample accession ERS031919 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031919" refname="KH29-sc-2011-04-20T12:03:19Z-1127025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031919</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH29-sc-2011-04-20T12:03:19Z-1127025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882170</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#22" center_name="SC" accession="ERX024328"> <IDENTIFIERS> <PRIMARY_ID>ERX024328</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882171, constructed from sample accession ERS031920 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031920" refname="KH30-sc-2011-04-20T12:03:20Z-1127026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031920</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH30-sc-2011-04-20T12:03:20Z-1127026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882171</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#1" center_name="SC" accession="ERX024329"> <IDENTIFIERS> <PRIMARY_ID>ERX024329</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882195, constructed from sample accession ERS031921 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031921" refname="KH32-sc-2011-04-20T12:03:21Z-1127027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031921</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH32-sc-2011-04-20T12:03:21Z-1127027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882195</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#2" center_name="SC" accession="ERX024330"> <IDENTIFIERS> <PRIMARY_ID>ERX024330</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882196, constructed from sample accession ERS031922 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031922" refname="KH33-sc-2011-04-20T12:03:21Z-1127028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031922</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH33-sc-2011-04-20T12:03:21Z-1127028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882196</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#3" center_name="SC" accession="ERX024331"> <IDENTIFIERS> <PRIMARY_ID>ERX024331</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882197, constructed from sample accession ERS031923 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031923" refname="KH34-sc-2011-04-20T12:03:22Z-1127029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031923</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH34-sc-2011-04-20T12:03:22Z-1127029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882197</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#4" center_name="SC" accession="ERX024332"> <IDENTIFIERS> <PRIMARY_ID>ERX024332</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882198, constructed from sample accession ERS031924 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031924" refname="KH35-sc-2011-04-20T12:03:23Z-1127030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031924</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH35-sc-2011-04-20T12:03:23Z-1127030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882198</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#5" center_name="SC" accession="ERX024333"> <IDENTIFIERS> <PRIMARY_ID>ERX024333</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882199, constructed from sample accession ERS031925 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031925" refname="KH37-sc-2011-04-20T12:03:24Z-1127031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031925</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH37-sc-2011-04-20T12:03:24Z-1127031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882199</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#6" center_name="SC" accession="ERX024334"> <IDENTIFIERS> <PRIMARY_ID>ERX024334</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882200, constructed from sample accession ERS031926 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031926" refname="KH38-sc-2011-04-20T12:03:25Z-1127032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031926</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH38-sc-2011-04-20T12:03:25Z-1127032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882200</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#7" center_name="SC" accession="ERX024335"> <IDENTIFIERS> <PRIMARY_ID>ERX024335</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882201, constructed from sample accession ERS031927 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031927" refname="KH39-sc-2011-04-20T12:03:25Z-1127033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031927</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH39-sc-2011-04-20T12:03:25Z-1127033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882201</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#8" center_name="SC" accession="ERX024336"> <IDENTIFIERS> <PRIMARY_ID>ERX024336</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882202, constructed from sample accession ERS031928 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031928" refname="KH40-sc-2011-04-20T12:03:26Z-1127034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031928</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH40-sc-2011-04-20T12:03:26Z-1127034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882202</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#9" center_name="SC" accession="ERX024337"> <IDENTIFIERS> <PRIMARY_ID>ERX024337</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882203, constructed from sample accession ERS031929 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031929" refname="KH41-sc-2011-04-20T12:03:26Z-1127035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031929</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH41-sc-2011-04-20T12:03:26Z-1127035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882203</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#10" center_name="SC" accession="ERX024338"> <IDENTIFIERS> <PRIMARY_ID>ERX024338</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882204, constructed from sample accession ERS031930 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031930" refname="KH42-sc-2011-04-20T12:03:27Z-1127036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH42-sc-2011-04-20T12:03:27Z-1127036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882204</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#11" center_name="SC" accession="ERX024339"> <IDENTIFIERS> <PRIMARY_ID>ERX024339</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882205, constructed from sample accession ERS031931 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031931" refname="KH43-sc-2011-04-20T12:03:27Z-1127037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH43-sc-2011-04-20T12:03:27Z-1127037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882205</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#12" center_name="SC" accession="ERX024340"> <IDENTIFIERS> <PRIMARY_ID>ERX024340</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882206, constructed from sample accession ERS031932 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031932" refname="KH45-sc-2011-04-20T12:03:29Z-1127038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH45-sc-2011-04-20T12:03:29Z-1127038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882206</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#13" center_name="SC" accession="ERX024341"> <IDENTIFIERS> <PRIMARY_ID>ERX024341</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882207, constructed from sample accession ERS031933 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031933" refname="KH47-sc-2011-04-20T12:03:30Z-1127039" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH47-sc-2011-04-20T12:03:30Z-1127039</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882207</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#14" center_name="SC" accession="ERX024342"> <IDENTIFIERS> <PRIMARY_ID>ERX024342</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882208, constructed from sample accession ERS031934 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031934" refname="KH48-sc-2011-04-20T12:03:30Z-1127040" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH48-sc-2011-04-20T12:03:30Z-1127040</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882208</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#15" center_name="SC" accession="ERX024343"> <IDENTIFIERS> <PRIMARY_ID>ERX024343</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882209, constructed from sample accession ERS031935 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031935" refname="KH49-sc-2011-04-20T12:03:31Z-1127041" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH49-sc-2011-04-20T12:03:31Z-1127041</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882209</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#16" center_name="SC" accession="ERX024344"> <IDENTIFIERS> <PRIMARY_ID>ERX024344</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882210, constructed from sample accession ERS031936 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031936" refname="KH50-sc-2011-04-20T12:03:31Z-1127042" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH50-sc-2011-04-20T12:03:31Z-1127042</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882210</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#17" center_name="SC" accession="ERX024345"> <IDENTIFIERS> <PRIMARY_ID>ERX024345</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882211, constructed from sample accession ERS031937 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031937" refname="KH52-sc-2011-04-20T12:03:32Z-1127043" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH52-sc-2011-04-20T12:03:32Z-1127043</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882211</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#18" center_name="SC" accession="ERX024346"> <IDENTIFIERS> <PRIMARY_ID>ERX024346</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882212, constructed from sample accession ERS031938 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031938" refname="KH53-sc-2011-04-20T12:03:32Z-1127044" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH53-sc-2011-04-20T12:03:32Z-1127044</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882212</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#19" center_name="SC" accession="ERX024347"> <IDENTIFIERS> <PRIMARY_ID>ERX024347</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882213, constructed from sample accession ERS031939 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031939" refname="KH54-sc-2011-04-20T12:03:33Z-1127045" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH54-sc-2011-04-20T12:03:33Z-1127045</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882213</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#20" center_name="SC" accession="ERX024348"> <IDENTIFIERS> <PRIMARY_ID>ERX024348</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882214, constructed from sample accession ERS031940 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031940" refname="KH55-sc-2011-04-20T12:03:34Z-1127046" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH55-sc-2011-04-20T12:03:34Z-1127046</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882214</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#21" center_name="SC" accession="ERX024349"> <IDENTIFIERS> <PRIMARY_ID>ERX024349</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882215, constructed from sample accession ERS031941 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031941" refname="KH57-sc-2011-04-20T12:03:35Z-1127047" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH57-sc-2011-04-20T12:03:35Z-1127047</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882215</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#22" center_name="SC" accession="ERX024350"> <IDENTIFIERS> <PRIMARY_ID>ERX024350</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882216, constructed from sample accession ERS031942 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031942" refname="KIEM-sc-2011-04-20T12:03:36Z-1127048" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KIEM-sc-2011-04-20T12:03:36Z-1127048</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882216</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#1" center_name="SC" accession="ERX024351"> <IDENTIFIERS> <PRIMARY_ID>ERX024351</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882310, constructed from sample accession ERS031943 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031943" refname="MS0001-sc-2011-04-20T12:03:36Z-1127049" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0001-sc-2011-04-20T12:03:36Z-1127049</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882310</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#2" center_name="SC" accession="ERX024352"> <IDENTIFIERS> <PRIMARY_ID>ERX024352</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882311, constructed from sample accession ERS031944 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031944" refname="MS0002-sc-2011-04-20T12:03:37Z-1127050" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0002-sc-2011-04-20T12:03:37Z-1127050</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882311</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#3" center_name="SC" accession="ERX024353"> <IDENTIFIERS> <PRIMARY_ID>ERX024353</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882312, constructed from sample accession ERS031945 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031945" refname="MS0005-sc-2011-04-20T12:03:37Z-1127051" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0005-sc-2011-04-20T12:03:37Z-1127051</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882312</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#4" center_name="SC" accession="ERX024354"> <IDENTIFIERS> <PRIMARY_ID>ERX024354</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882313, constructed from sample accession ERS031946 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031946" refname="MS0010-sc-2011-04-20T12:03:38Z-1127052" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0010-sc-2011-04-20T12:03:38Z-1127052</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882313</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#5" center_name="SC" accession="ERX024355"> <IDENTIFIERS> <PRIMARY_ID>ERX024355</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882314, constructed from sample accession ERS031947 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031947" refname="MS0012-sc-2011-04-20T12:03:39Z-1127053" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0012-sc-2011-04-20T12:03:39Z-1127053</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882314</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#6" center_name="SC" accession="ERX024356"> <IDENTIFIERS> <PRIMARY_ID>ERX024356</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882315, constructed from sample accession ERS031948 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031948" refname="MS0014-sc-2011-04-20T12:03:40Z-1127054" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0014-sc-2011-04-20T12:03:40Z-1127054</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882315</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#7" center_name="SC" accession="ERX024357"> <IDENTIFIERS> <PRIMARY_ID>ERX024357</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882316, constructed from sample accession ERS031949 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031949" refname="MS0019-sc-2011-04-20T12:03:40Z-1127055" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0019-sc-2011-04-20T12:03:40Z-1127055</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882316</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#8" center_name="SC" accession="ERX024358"> <IDENTIFIERS> <PRIMARY_ID>ERX024358</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882317, constructed from sample accession ERS031950 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031950" refname="MS0020-sc-2011-04-20T12:03:41Z-1127056" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0020-sc-2011-04-20T12:03:41Z-1127056</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882317</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#9" center_name="SC" accession="ERX024359"> <IDENTIFIERS> <PRIMARY_ID>ERX024359</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882318, constructed from sample accession ERS031951 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031951" refname="MS0021-sc-2011-04-20T12:03:41Z-1127057" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0021-sc-2011-04-20T12:03:41Z-1127057</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882318</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#10" center_name="SC" accession="ERX024360"> <IDENTIFIERS> <PRIMARY_ID>ERX024360</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882319, constructed from sample accession ERS031952 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031952" refname="MS0022-sc-2011-04-20T12:03:42Z-1127058" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0022-sc-2011-04-20T12:03:42Z-1127058</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882319</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#11" center_name="SC" accession="ERX024361"> <IDENTIFIERS> <PRIMARY_ID>ERX024361</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882320, constructed from sample accession ERS031953 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031953" refname="MS0025-sc-2011-04-20T12:03:43Z-1127059" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0025-sc-2011-04-20T12:03:43Z-1127059</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882320</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#12" center_name="SC" accession="ERX024362"> <IDENTIFIERS> <PRIMARY_ID>ERX024362</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882321, constructed from sample accession ERS031954 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031954" refname="MS0026-sc-2011-04-20T12:03:44Z-1127060" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0026-sc-2011-04-20T12:03:44Z-1127060</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882321</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#13" center_name="SC" accession="ERX024363"> <IDENTIFIERS> <PRIMARY_ID>ERX024363</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882322, constructed from sample accession ERS031955 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031955" refname="MS0029-sc-2011-04-20T12:03:45Z-1127061" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0029-sc-2011-04-20T12:03:45Z-1127061</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882322</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT

ERX024364 SC_EXP_6578_4#14 <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882323, constructed from sample accession ERS031956 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031956" refname="MS0036-sc-2011-04-20T12:03:45Z-1127062" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0036-sc-2011-04-20T12:03:45Z-1127062</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882323</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#15" center_name="SC" accession="ERX024365"> <IDENTIFIERS> <PRIMARY_ID>ERX024365</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882324, constructed from sample accession ERS031957 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031957" refname="MS0038-sc-2011-04-20T12:03:46Z-1127063" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0038-sc-2011-04-20T12:03:46Z-1127063</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882324</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#16" center_name="SC" accession="ERX024366"> <IDENTIFIERS> <PRIMARY_ID>ERX024366</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882325, constructed from sample accession ERS031958 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031958" refname="MS0041-sc-2011-04-20T12:03:46Z-1127064" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0041-sc-2011-04-20T12:03:46Z-1127064</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882325</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#17" center_name="SC" accession="ERX024367"> <IDENTIFIERS> <PRIMARY_ID>ERX024367</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882326, constructed from sample accession ERS031959 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031959" refname="MS0043-sc-2011-04-20T12:03:47Z-1127065" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0043-sc-2011-04-20T12:03:47Z-1127065</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882326</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#18" center_name="SC" accession="ERX024368"> <IDENTIFIERS> <PRIMARY_ID>ERX024368</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882327, constructed from sample accession ERS031960 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031960" refname="MS0047-sc-2011-04-20T12:03:47Z-1127066" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0047-sc-2011-04-20T12:03:47Z-1127066</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882327</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#19" center_name="SC" accession="ERX024369"> <IDENTIFIERS> <PRIMARY_ID>ERX024369</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882328, constructed from sample accession ERS031961 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031961" refname="MS0050-sc-2011-04-20T12:03:48Z-1127067" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0050-sc-2011-04-20T12:03:48Z-1127067</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882328</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#20" center_name="SC" accession="ERX024370"> <IDENTIFIERS> <PRIMARY_ID>ERX024370</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882329, constructed from sample accession ERS031962 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031962" refname="MS0052-sc-2011-04-20T12:03:49Z-1127068" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0052-sc-2011-04-20T12:03:49Z-1127068</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882329</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#21" center_name="SC" accession="ERX024371"> <IDENTIFIERS> <PRIMARY_ID>ERX024371</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882330, constructed from sample accession ERS031963 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031963" refname="MS0055-sc-2011-04-20T12:03:50Z-1127069" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0055-sc-2011-04-20T12:03:50Z-1127069</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882330</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#22" center_name="SC" accession="ERX024372"> <IDENTIFIERS> <PRIMARY_ID>ERX024372</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882331, constructed from sample accession ERS031964 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031964" refname="MS0059-sc-2011-04-20T12:03:51Z-1127070" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0059-sc-2011-04-20T12:03:51Z-1127070</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882331</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#1" center_name="SC" accession="ERX024373"> <IDENTIFIERS> <PRIMARY_ID>ERX024373</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868452, constructed from sample accession ERS031720 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031720" refname="10398-sc-2011-04-20T12:00:59Z-1126826" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031720</PRIMARY_ID> <SUBMITTER_ID namespace="SC">10398-sc-2011-04-20T12:00:59Z-1126826</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868452</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#2" center_name="SC" accession="ERX024374"> <IDENTIFIERS> <PRIMARY_ID>ERX024374</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868453, constructed from sample accession ERS031721 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031721" refname="20006-sc-2011-04-20T12:01:00Z-1126827" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031721</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20006-sc-2011-04-20T12:01:00Z-1126827</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868453</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#3" center_name="SC" accession="ERX024375"> <IDENTIFIERS> <PRIMARY_ID>ERX024375</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868454, constructed from sample accession ERS031722 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031722" refname="20021-sc-2011-04-20T12:01:00Z-1126828" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031722</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20021-sc-2011-04-20T12:01:00Z-1126828</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868454</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#4" center_name="SC" accession="ERX024376"> <IDENTIFIERS> <PRIMARY_ID>ERX024376</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868455, constructed from sample accession ERS031723 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031723" refname="20023-sc-2011-04-20T12:01:01Z-1126829" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031723</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20023-sc-2011-04-20T12:01:01Z-1126829</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868455</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#5" center_name="SC" accession="ERX024377"> <IDENTIFIERS> <PRIMARY_ID>ERX024377</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868456, constructed from sample accession ERS031724 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031724" refname="20037-sc-2011-04-20T12:01:01Z-1126830" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031724</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20037-sc-2011-04-20T12:01:01Z-1126830</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868456</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#6" center_name="SC" accession="ERX024378"> <IDENTIFIERS> <PRIMARY_ID>ERX024378</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868457, constructed from sample accession ERS031725 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031725" refname="20070-sc-2011-04-20T12:01:02Z-1126831" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031725</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20070-sc-2011-04-20T12:01:02Z-1126831</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868457</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#7" center_name="SC" accession="ERX024379"> <IDENTIFIERS> <PRIMARY_ID>ERX024379</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868458, constructed from sample accession ERS031726 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031726" refname="20094-sc-2011-04-20T12:01:03Z-1126832" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031726</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20094-sc-2011-04-20T12:01:03Z-1126832</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868458</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#8" center_name="SC" accession="ERX024380"> <IDENTIFIERS> <PRIMARY_ID>ERX024380</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868459, constructed from sample accession ERS031727 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031727" refname="20228-sc-2011-04-20T12:01:04Z-1126833" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031727</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20228-sc-2011-04-20T12:01:04Z-1126833</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868459</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#9" center_name="SC" accession="ERX024381"> <IDENTIFIERS> <PRIMARY_ID>ERX024381</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868460, constructed from sample accession ERS031728 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031728" refname="20261-sc-2011-04-20T12:01:06Z-1126834" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031728</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20261-sc-2011-04-20T12:01:06Z-1126834</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868460</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#10" center_name="SC" accession="ERX024382"> <IDENTIFIERS> <PRIMARY_ID>ERX024382</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868461, constructed from sample accession ERS031729 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031729" refname="20263-sc-2011-04-20T12:01:06Z-1126835" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031729</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20263-sc-2011-04-20T12:01:06Z-1126835</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868461</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#11" center_name="SC" accession="ERX024383"> <IDENTIFIERS> <PRIMARY_ID>ERX024383</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868462, constructed from sample accession ERS031730 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031730" refname="20343-sc-2011-04-20T12:01:07Z-1126836" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031730</PRIMARY_ID> <SUBMITTER_ID namespace="SC">20343-sc-2011-04-20T12:01:07Z-1126836</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868462</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#12" center_name="SC" accession="ERX024384"> <IDENTIFIERS> <PRIMARY_ID>ERX024384</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868463, constructed from sample accession ERS031731 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031731" refname="30003-sc-2011-04-20T12:01:08Z-1126837" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031731</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30003-sc-2011-04-20T12:01:08Z-1126837</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868463</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#13" center_name="SC" accession="ERX024385"> <IDENTIFIERS> <PRIMARY_ID>ERX024385</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868464, constructed from sample accession ERS031732 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031732" refname="30008-sc-2011-04-20T12:01:08Z-1126838" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031732</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30008-sc-2011-04-20T12:01:08Z-1126838</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868464</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#14" center_name="SC" accession="ERX024386"> <IDENTIFIERS> <PRIMARY_ID>ERX024386</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868465, constructed from sample accession ERS031733 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031733" refname="30010-sc-2011-04-20T12:01:10Z-1126839" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30010-sc-2011-04-20T12:01:10Z-1126839</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868465</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#15" center_name="SC" accession="ERX024387"> <IDENTIFIERS> <PRIMARY_ID>ERX024387</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868466, constructed from sample accession ERS031734 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031734" refname="30037-sc-2011-04-20T12:01:10Z-1126840" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031734</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30037-sc-2011-04-20T12:01:10Z-1126840</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868466</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#16" center_name="SC" accession="ERX024388"> <IDENTIFIERS> <PRIMARY_ID>ERX024388</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868467, constructed from sample accession ERS031735 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031735" refname="30054-sc-2011-04-20T12:01:11Z-1126841" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031735</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30054-sc-2011-04-20T12:01:11Z-1126841</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868467</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#17" center_name="SC" accession="ERX024389"> <IDENTIFIERS> <PRIMARY_ID>ERX024389</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868468, constructed from sample accession ERS031736 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031736" refname="30059-sc-2011-04-20T12:01:11Z-1126842" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031736</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30059-sc-2011-04-20T12:01:11Z-1126842</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868468</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#18" center_name="SC" accession="ERX024390"> <IDENTIFIERS> <PRIMARY_ID>ERX024390</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868469, constructed from sample accession ERS031737 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031737" refname="30071-sc-2011-04-20T12:01:12Z-1126843" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031737</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30071-sc-2011-04-20T12:01:12Z-1126843</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868469</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#19" center_name="SC" accession="ERX024391"> <IDENTIFIERS> <PRIMARY_ID>ERX024391</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868470, constructed from sample accession ERS031738 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031738" refname="30073-sc-2011-04-20T12:01:13Z-1126844" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031738</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30073-sc-2011-04-20T12:01:13Z-1126844</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868470</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#20" center_name="SC" accession="ERX024392"> <IDENTIFIERS> <PRIMARY_ID>ERX024392</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868471, constructed from sample accession ERS031739 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031739" refname="30078-sc-2011-04-20T12:01:13Z-1126845" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031739</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30078-sc-2011-04-20T12:01:13Z-1126845</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868471</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#21" center_name="SC" accession="ERX024393"> <IDENTIFIERS> <PRIMARY_ID>ERX024393</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868472, constructed from sample accession ERS031740 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031740" refname="30100-sc-2011-04-20T12:01:14Z-1126846" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031740</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30100-sc-2011-04-20T12:01:14Z-1126846</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868472</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#22" center_name="SC" accession="ERX024394"> <IDENTIFIERS> <PRIMARY_ID>ERX024394</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868473, constructed from sample accession ERS031741 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031741" refname="30112-sc-2011-04-20T12:01:16Z-1126847" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031741</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30112-sc-2011-04-20T12:01:16Z-1126847</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868473</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_8#23" center_name="SC" accession="ERX024395"> <IDENTIFIERS> <PRIMARY_ID>ERX024395</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_8#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868474, constructed from sample accession ERS031742 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_8). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031742" refname="30124-sc-2011-04-20T12:01:17Z-1126848" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031742</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30124-sc-2011-04-20T12:01:17Z-1126848</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868474</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#1" center_name="SC" accession="ERX024396"> <IDENTIFIERS> <PRIMARY_ID>ERX024396</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868475, constructed from sample accession ERS031743 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031743" refname="30157-sc-2011-04-20T12:01:17Z-1126849" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031743</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30157-sc-2011-04-20T12:01:17Z-1126849</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868475</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#2" center_name="SC" accession="ERX024397"> <IDENTIFIERS> <PRIMARY_ID>ERX024397</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868476, constructed from sample accession ERS031744 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031744" refname="30162-sc-2011-04-20T12:01:18Z-1126850" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031744</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30162-sc-2011-04-20T12:01:18Z-1126850</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868476</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#3" center_name="SC" accession="ERX024398"> <IDENTIFIERS> <PRIMARY_ID>ERX024398</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868477, constructed from sample accession ERS031745 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031745" refname="30164-sc-2011-04-20T12:01:18Z-1126851" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031745</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30164-sc-2011-04-20T12:01:18Z-1126851</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868477</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#4" center_name="SC" accession="ERX024399"> <IDENTIFIERS> <PRIMARY_ID>ERX024399</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868478, constructed from sample accession ERS031746 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031746" refname="30169-sc-2011-04-20T12:01:19Z-1126852" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031746</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30169-sc-2011-04-20T12:01:19Z-1126852</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868478</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#5" center_name="SC" accession="ERX024400"> <IDENTIFIERS> <PRIMARY_ID>ERX024400</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868479, constructed from sample accession ERS031747 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031747" refname="30172-sc-2011-04-20T12:01:19Z-1126853" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031747</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30172-sc-2011-04-20T12:01:19Z-1126853</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868479</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#6" center_name="SC" accession="ERX024401"> <IDENTIFIERS> <PRIMARY_ID>ERX024401</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868480, constructed from sample accession ERS031748 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031748" refname="30174-sc-2011-04-20T12:01:21Z-1126854" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031748</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30174-sc-2011-04-20T12:01:21Z-1126854</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868480</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#7" center_name="SC" accession="ERX024402"> <IDENTIFIERS> <PRIMARY_ID>ERX024402</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868481, constructed from sample accession ERS031749 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031749" refname="30233-sc-2011-04-20T12:01:22Z-1126855" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031749</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30233-sc-2011-04-20T12:01:22Z-1126855</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868481</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#8" center_name="SC" accession="ERX024403"> <IDENTIFIERS> <PRIMARY_ID>ERX024403</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868482, constructed from sample accession ERS031750 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031750" refname="30293-sc-2011-04-20T12:01:22Z-1126856" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031750</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30293-sc-2011-04-20T12:01:22Z-1126856</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868482</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#9" center_name="SC" accession="ERX024404"> <IDENTIFIERS> <PRIMARY_ID>ERX024404</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868483, constructed from sample accession ERS031751 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031751" refname="30366-sc-2011-04-20T12:01:23Z-1126857" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031751</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30366-sc-2011-04-20T12:01:23Z-1126857</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868483</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#10" center_name="SC" accession="ERX024405"> <IDENTIFIERS> <PRIMARY_ID>ERX024405</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868484, constructed from sample accession ERS031752 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031752" refname="30371-sc-2011-04-20T12:01:24Z-1126858" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031752</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30371-sc-2011-04-20T12:01:24Z-1126858</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868484</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#11" center_name="SC" accession="ERX024406"> <IDENTIFIERS> <PRIMARY_ID>ERX024406</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868485, constructed from sample accession ERS031753 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031753" refname="30387-sc-2011-04-20T12:01:24Z-1126859" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031753</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30387-sc-2011-04-20T12:01:24Z-1126859</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868485</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#12" center_name="SC" accession="ERX024407"> <IDENTIFIERS> <PRIMARY_ID>ERX024407</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868486, constructed from sample accession ERS031754 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031754" refname="30450-sc-2011-04-20T12:01:25Z-1126860" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031754</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30450-sc-2011-04-20T12:01:25Z-1126860</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868486</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#13" center_name="SC" accession="ERX024408"> <IDENTIFIERS> <PRIMARY_ID>ERX024408</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868487, constructed from sample accession ERS031755 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031755" refname="30451-sc-2011-04-20T12:01:26Z-1126861" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031755</PRIMARY_ID> <SUBMITTER_ID namespace="SC">30451-sc-2011-04-20T12:01:26Z-1126861</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868487</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#14" center_name="SC" accession="ERX024409"> <IDENTIFIERS> <PRIMARY_ID>ERX024409</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868488, constructed from sample accession ERS031756 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031756" refname="DE0010-sc-2011-04-20T12:01:27Z-1126862" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031756</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0010-sc-2011-04-20T12:01:27Z-1126862</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868488</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#15" center_name="SC" accession="ERX024410"> <IDENTIFIERS> <PRIMARY_ID>ERX024410</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868489, constructed from sample accession ERS031757 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031757" refname="DE0029-sc-2011-04-20T12:01:28Z-1126863" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031757</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0029-sc-2011-04-20T12:01:28Z-1126863</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868489</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#16" center_name="SC" accession="ERX024411"> <IDENTIFIERS> <PRIMARY_ID>ERX024411</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868490, constructed from sample accession ERS031758 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031758" refname="DE0030-sc-2011-04-20T12:01:28Z-1126864" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031758</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0030-sc-2011-04-20T12:01:28Z-1126864</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868490</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#17" center_name="SC" accession="ERX024412"> <IDENTIFIERS> <PRIMARY_ID>ERX024412</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868491, constructed from sample accession ERS031759 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031759" refname="DE0042-sc-2011-04-20T12:01:29Z-1126865" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031759</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0042-sc-2011-04-20T12:01:29Z-1126865</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868491</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#18" center_name="SC" accession="ERX024413"> <IDENTIFIERS> <PRIMARY_ID>ERX024413</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868492, constructed from sample accession ERS031760 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031760" refname="DE0088-sc-2011-04-20T12:01:29Z-1126866" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031760</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0088-sc-2011-04-20T12:01:29Z-1126866</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868492</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#19" center_name="SC" accession="ERX024414"> <IDENTIFIERS> <PRIMARY_ID>ERX024414</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868493, constructed from sample accession ERS031761 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031761" refname="DE0090-sc-2011-04-20T12:01:30Z-1126867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031761</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0090-sc-2011-04-20T12:01:30Z-1126867</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868493</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#20" center_name="SC" accession="ERX024415"> <IDENTIFIERS> <PRIMARY_ID>ERX024415</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868494, constructed from sample accession ERS031762 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031762" refname="DE0119-sc-2011-04-20T12:01:30Z-1126868" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031762</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0119-sc-2011-04-20T12:01:30Z-1126868</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868494</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#21" center_name="SC" accession="ERX024416"> <IDENTIFIERS> <PRIMARY_ID>ERX024416</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868495, constructed from sample accession ERS031763 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031763" refname="DE0174-sc-2011-04-20T12:01:32Z-1126869" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031763</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0174-sc-2011-04-20T12:01:32Z-1126869</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868495</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#22" center_name="SC" accession="ERX024417"> <IDENTIFIERS> <PRIMARY_ID>ERX024417</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868496, constructed from sample accession ERS031764 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031764" refname="DE0175-sc-2011-04-20T12:01:32Z-1126870" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031764</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0175-sc-2011-04-20T12:01:32Z-1126870</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868496</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_3#23" center_name="SC" accession="ERX024418"> <IDENTIFIERS> <PRIMARY_ID>ERX024418</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_3#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868497, constructed from sample accession ERS031765 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_3). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031765" refname="DE0184-sc-2011-04-20T12:01:33Z-1126871" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031765</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0184-sc-2011-04-20T12:01:33Z-1126871</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868497</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#1" center_name="SC" accession="ERX024419"> <IDENTIFIERS> <PRIMARY_ID>ERX024419</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868498, constructed from sample accession ERS031766 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031766" refname="DE0185-sc-2011-04-20T12:01:33Z-1126872" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031766</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0185-sc-2011-04-20T12:01:33Z-1126872</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868498</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#2" center_name="SC" accession="ERX024420"> <IDENTIFIERS> <PRIMARY_ID>ERX024420</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868499, constructed from sample accession ERS031767 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031767" refname="DE0195-sc-2011-04-20T12:01:34Z-1126873" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031767</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0195-sc-2011-04-20T12:01:34Z-1126873</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868499</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#3" center_name="SC" accession="ERX024421"> <IDENTIFIERS> <PRIMARY_ID>ERX024421</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868500, constructed from sample accession ERS031768 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031768" refname="DE0213-sc-2011-04-20T12:01:34Z-1126874" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031768</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0213-sc-2011-04-20T12:01:34Z-1126874</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868500</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#4" center_name="SC" accession="ERX024422"> <IDENTIFIERS> <PRIMARY_ID>ERX024422</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868501, constructed from sample accession ERS031769 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031769" refname="DE0224-sc-2011-04-20T12:01:35Z-1126875" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031769</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0224-sc-2011-04-20T12:01:35Z-1126875</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868501</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#5" center_name="SC" accession="ERX024423"> <IDENTIFIERS> <PRIMARY_ID>ERX024423</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868502, constructed from sample accession ERS031770 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031770" refname="DE0319-sc-2011-04-20T12:01:36Z-1126876" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031770</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0319-sc-2011-04-20T12:01:36Z-1126876</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868502</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#6" center_name="SC" accession="ERX024424"> <IDENTIFIERS> <PRIMARY_ID>ERX024424</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868503, constructed from sample accession ERS031771 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031771" refname="DE0350-sc-2011-04-20T12:01:37Z-1126877" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031771</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0350-sc-2011-04-20T12:01:37Z-1126877</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868503</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#7" center_name="SC" accession="ERX024425"> <IDENTIFIERS> <PRIMARY_ID>ERX024425</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868504, constructed from sample accession ERS031772 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031772" refname="DE0366-sc-2011-04-20T12:01:37Z-1126878" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031772</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0366-sc-2011-04-20T12:01:37Z-1126878</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868504</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#8" center_name="SC" accession="ERX024426"> <IDENTIFIERS> <PRIMARY_ID>ERX024426</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868505, constructed from sample accession ERS031773 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031773" refname="DE0438-sc-2011-04-20T12:01:38Z-1126879" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031773</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0438-sc-2011-04-20T12:01:38Z-1126879</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868505</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#9" center_name="SC" accession="ERX024427"> <IDENTIFIERS> <PRIMARY_ID>ERX024427</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868506, constructed from sample accession ERS031774 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031774" refname="DE0457-sc-2011-04-20T12:01:39Z-1126880" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031774</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0457-sc-2011-04-20T12:01:39Z-1126880</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868506</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#10" center_name="SC" accession="ERX024428"> <IDENTIFIERS> <PRIMARY_ID>ERX024428</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868507, constructed from sample accession ERS031775 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031775" refname="DE0569-sc-2011-04-20T12:01:39Z-1126881" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031775</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0569-sc-2011-04-20T12:01:39Z-1126881</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868507</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#11" center_name="SC" accession="ERX024429"> <IDENTIFIERS> <PRIMARY_ID>ERX024429</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868508, constructed from sample accession ERS031776 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031776" refname="DE0578-sc-2011-04-20T12:01:40Z-1126882" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031776</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0578-sc-2011-04-20T12:01:40Z-1126882</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868508</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#12" center_name="SC" accession="ERX024430"> <IDENTIFIERS> <PRIMARY_ID>ERX024430</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868509, constructed from sample accession ERS031777 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031777" refname="DE0614-sc-2011-04-20T12:01:41Z-1126883" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031777</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0614-sc-2011-04-20T12:01:41Z-1126883</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868509</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#13" center_name="SC" accession="ERX024431"> <IDENTIFIERS> <PRIMARY_ID>ERX024431</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868510, constructed from sample accession ERS031778 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031778" refname="DE0670-sc-2011-04-20T12:01:42Z-1126884" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031778</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0670-sc-2011-04-20T12:01:42Z-1126884</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868510</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#14" center_name="SC" accession="ERX024432"> <IDENTIFIERS> <PRIMARY_ID>ERX024432</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868511, constructed from sample accession ERS031779 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031779" refname="DE0692-sc-2011-04-20T12:01:42Z-1126885" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031779</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0692-sc-2011-04-20T12:01:42Z-1126885</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868511</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#15" center_name="SC" accession="ERX024433"> <IDENTIFIERS> <PRIMARY_ID>ERX024433</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868512, constructed from sample accession ERS031780 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031780" refname="DE0712-sc-2011-04-20T12:01:43Z-1126886" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0712-sc-2011-04-20T12:01:43Z-1126886</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868512</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#16" center_name="SC" accession="ERX024434"> <IDENTIFIERS> <PRIMARY_ID>ERX024434</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868513, constructed from sample accession ERS031781 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031781" refname="DE0721-sc-2011-04-20T12:01:44Z-1126887" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031781</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0721-sc-2011-04-20T12:01:44Z-1126887</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868513</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#17" center_name="SC" accession="ERX024435"> <IDENTIFIERS> <PRIMARY_ID>ERX024435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868514, constructed from sample accession ERS031782 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031782" refname="DE0804-sc-2011-04-20T12:01:44Z-1126888" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031782</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0804-sc-2011-04-20T12:01:44Z-1126888</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868514</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#18" center_name="SC" accession="ERX024436"> <IDENTIFIERS> <PRIMARY_ID>ERX024436</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868515, constructed from sample accession ERS031783 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031783" refname="DE0807-sc-2011-04-20T12:01:45Z-1126889" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031783</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0807-sc-2011-04-20T12:01:45Z-1126889</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868515</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#19" center_name="SC" accession="ERX024437"> <IDENTIFIERS> <PRIMARY_ID>ERX024437</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868516, constructed from sample accession ERS031784 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031784" refname="DE0874-sc-2011-04-20T12:01:45Z-1126890" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031784</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE0874-sc-2011-04-20T12:01:45Z-1126890</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868516</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#20" center_name="SC" accession="ERX024438"> <IDENTIFIERS> <PRIMARY_ID>ERX024438</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868517, constructed from sample accession ERS031785 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031785" refname="DE1130-sc-2011-04-20T12:01:47Z-1126891" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031785</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1130-sc-2011-04-20T12:01:47Z-1126891</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868517</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#21" center_name="SC" accession="ERX024439"> <IDENTIFIERS> <PRIMARY_ID>ERX024439</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868518, constructed from sample accession ERS031786 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031786" refname="DE1173-sc-2011-04-20T12:01:48Z-1126892" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031786</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1173-sc-2011-04-20T12:01:48Z-1126892</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868518</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#22" center_name="SC" accession="ERX024440"> <IDENTIFIERS> <PRIMARY_ID>ERX024440</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868519, constructed from sample accession ERS031787 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031787" refname="DE1174-sc-2011-04-20T12:01:48Z-1126893" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031787</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1174-sc-2011-04-20T12:01:48Z-1126893</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868519</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_4#23" center_name="SC" accession="ERX024441"> <IDENTIFIERS> <PRIMARY_ID>ERX024441</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_4#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2868520, constructed from sample accession ERS031788 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_4). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031788" refname="DE1179-sc-2011-04-20T12:01:49Z-1126894" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031788</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1179-sc-2011-04-20T12:01:49Z-1126894</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2868520</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="67"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="23" min_match="7" max_mismatch="1" match_edge="end">TGCATAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#1" center_name="SC" accession="ERX024442"> <IDENTIFIERS> <PRIMARY_ID>ERX024442</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874359, constructed from sample accession ERS031789 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031789" refname="DE1194-sc-2011-04-20T12:01:49Z-1126895" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031789</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1194-sc-2011-04-20T12:01:49Z-1126895</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874359</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#2" center_name="SC" accession="ERX024443"> <IDENTIFIERS> <PRIMARY_ID>ERX024443</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874360, constructed from sample accession ERS031790 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031790" refname="DE1244-sc-2011-04-20T12:01:50Z-1126896" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031790</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1244-sc-2011-04-20T12:01:50Z-1126896</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874360</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#3" center_name="SC" accession="ERX024444"> <IDENTIFIERS> <PRIMARY_ID>ERX024444</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874361, constructed from sample accession ERS031791 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031791" refname="DE1252-sc-2011-04-20T12:01:50Z-1126897" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031791</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1252-sc-2011-04-20T12:01:50Z-1126897</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874361</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#4" center_name="SC" accession="ERX024445"> <IDENTIFIERS> <PRIMARY_ID>ERX024445</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874362, constructed from sample accession ERS031792 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031792" refname="DE1279-sc-2011-04-20T12:01:52Z-1126898" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031792</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1279-sc-2011-04-20T12:01:52Z-1126898</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874362</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#5" center_name="SC" accession="ERX024446"> <IDENTIFIERS> <PRIMARY_ID>ERX024446</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874363, constructed from sample accession ERS031793 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031793" refname="DE1342-sc-2011-04-20T12:01:52Z-1126899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031793</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1342-sc-2011-04-20T12:01:52Z-1126899</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874363</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#6" center_name="SC" accession="ERX024447"> <IDENTIFIERS> <PRIMARY_ID>ERX024447</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874364, constructed from sample accession ERS031794 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031794" refname="DE1455-sc-2011-04-20T12:01:53Z-1126900" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031794</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1455-sc-2011-04-20T12:01:53Z-1126900</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874364</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#7" center_name="SC" accession="ERX024448"> <IDENTIFIERS> <PRIMARY_ID>ERX024448</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874365, constructed from sample accession ERS031795 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031795" refname="DE1461-sc-2011-04-20T12:01:54Z-1126901" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031795</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1461-sc-2011-04-20T12:01:54Z-1126901</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874365</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#8" center_name="SC" accession="ERX024449"> <IDENTIFIERS> <PRIMARY_ID>ERX024449</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874366, constructed from sample accession ERS031796 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031796" refname="DE1496-sc-2011-04-20T12:01:54Z-1126902" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031796</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1496-sc-2011-04-20T12:01:54Z-1126902</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874366</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#9" center_name="SC" accession="ERX024450"> <IDENTIFIERS> <PRIMARY_ID>ERX024450</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874367, constructed from sample accession ERS031797 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031797" refname="DE1512-sc-2011-04-20T12:01:55Z-1126903" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031797</PRIMARY_ID> <SUBMITTER_ID namespace="SC">DE1512-sc-2011-04-20T12:01:55Z-1126903</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874367</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#10" center_name="SC" accession="ERX024451"> <IDENTIFIERS> <PRIMARY_ID>ERX024451</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874368, constructed from sample accession ERS031798 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031798" refname="EG0002-sc-2011-04-20T12:01:55Z-1126904" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031798</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0002-sc-2011-04-20T12:01:55Z-1126904</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874368</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#11" center_name="SC" accession="ERX024452"> <IDENTIFIERS> <PRIMARY_ID>ERX024452</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874369, constructed from sample accession ERS031799 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031799" refname="EG0006-sc-2011-04-20T12:01:57Z-1126905" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031799</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0006-sc-2011-04-20T12:01:57Z-1126905</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874369</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#12" center_name="SC" accession="ERX024453"> <IDENTIFIERS> <PRIMARY_ID>ERX024453</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874370, constructed from sample accession ERS031800 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031800" refname="EG0055-sc-2011-04-20T12:01:58Z-1126906" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031800</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0055-sc-2011-04-20T12:01:58Z-1126906</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874370</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#13" center_name="SC" accession="ERX024454"> <IDENTIFIERS> <PRIMARY_ID>ERX024454</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874371, constructed from sample accession ERS031801 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031801" refname="EG0059-sc-2011-04-20T12:01:58Z-1126907" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031801</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0059-sc-2011-04-20T12:01:58Z-1126907</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874371</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#14" center_name="SC" accession="ERX024455"> <IDENTIFIERS> <PRIMARY_ID>ERX024455</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874372, constructed from sample accession ERS031802 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031802" refname="EG0085-sc-2011-04-20T12:01:59Z-1126908" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031802</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0085-sc-2011-04-20T12:01:59Z-1126908</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874372</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#15" center_name="SC" accession="ERX024456"> <IDENTIFIERS> <PRIMARY_ID>ERX024456</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874373, constructed from sample accession ERS031803 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031803" refname="EG0134-sc-2011-04-20T12:01:59Z-1126909" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031803</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0134-sc-2011-04-20T12:01:59Z-1126909</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874373</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#16" center_name="SC" accession="ERX024457"> <IDENTIFIERS> <PRIMARY_ID>ERX024457</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874374, constructed from sample accession ERS031804 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031804" refname="EG0198-sc-2011-04-20T12:02:00Z-1126910" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031804</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0198-sc-2011-04-20T12:02:00Z-1126910</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874374</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#17" center_name="SC" accession="ERX024458"> <IDENTIFIERS> <PRIMARY_ID>ERX024458</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874375, constructed from sample accession ERS031805 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031805" refname="EG0257-sc-2011-04-20T12:02:01Z-1126911" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031805</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0257-sc-2011-04-20T12:02:01Z-1126911</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874375</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#18" center_name="SC" accession="ERX024459"> <IDENTIFIERS> <PRIMARY_ID>ERX024459</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874376, constructed from sample accession ERS031806 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031806" refname="EG0302-sc-2011-04-20T12:02:01Z-1126912" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031806</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0302-sc-2011-04-20T12:02:01Z-1126912</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874376</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#19" center_name="SC" accession="ERX024460"> <IDENTIFIERS> <PRIMARY_ID>ERX024460</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874377, constructed from sample accession ERS031807 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031807" refname="EG0305-sc-2011-04-20T12:02:03Z-1126913" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031807</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0305-sc-2011-04-20T12:02:03Z-1126913</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874377</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#20" center_name="SC" accession="ERX024461"> <IDENTIFIERS> <PRIMARY_ID>ERX024461</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874378, constructed from sample accession ERS031808 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031808" refname="EG0319-sc-2011-04-20T12:02:03Z-1126914" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031808</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0319-sc-2011-04-20T12:02:03Z-1126914</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874378</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#21" center_name="SC" accession="ERX024462"> <IDENTIFIERS> <PRIMARY_ID>ERX024462</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874379, constructed from sample accession ERS031809 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031809" refname="EG0329-sc-2011-04-20T12:02:04Z-1126915" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031809</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0329-sc-2011-04-20T12:02:04Z-1126915</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874379</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_5#22" center_name="SC" accession="ERX024463"> <IDENTIFIERS> <PRIMARY_ID>ERX024463</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2874380, constructed from sample accession ERS031810 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031810" refname="EG0380-sc-2011-04-20T12:02:05Z-1126916" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031810</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0380-sc-2011-04-20T12:02:05Z-1126916</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2874380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#1" center_name="SC" accession="ERX024464"> <IDENTIFIERS> <PRIMARY_ID>ERX024464</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875153, constructed from sample accession ERS031811 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031811" refname="EG0387-sc-2011-04-20T12:02:05Z-1126917" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031811</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0387-sc-2011-04-20T12:02:05Z-1126917</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#2" center_name="SC" accession="ERX024465"> <IDENTIFIERS> <PRIMARY_ID>ERX024465</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875154, constructed from sample accession ERS031812 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031812" refname="EG0403-sc-2011-04-20T12:02:06Z-1126918" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031812</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0403-sc-2011-04-20T12:02:06Z-1126918</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#3" center_name="SC" accession="ERX024466"> <IDENTIFIERS> <PRIMARY_ID>ERX024466</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875155, constructed from sample accession ERS031813 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031813" refname="EG0412-sc-2011-04-20T12:02:07Z-1126919" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031813</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0412-sc-2011-04-20T12:02:07Z-1126919</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#4" center_name="SC" accession="ERX024467"> <IDENTIFIERS> <PRIMARY_ID>ERX024467</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875156, constructed from sample accession ERS031814 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031814" refname="EG0419-sc-2011-04-20T12:02:08Z-1126920" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031814</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0419-sc-2011-04-20T12:02:08Z-1126920</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#5" center_name="SC" accession="ERX024468"> <IDENTIFIERS> <PRIMARY_ID>ERX024468</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875157, constructed from sample accession ERS031815 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031815" refname="EG0435-sc-2011-04-20T12:02:09Z-1126921" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031815</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0435-sc-2011-04-20T12:02:09Z-1126921</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#6" center_name="SC" accession="ERX024469"> <IDENTIFIERS> <PRIMARY_ID>ERX024469</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875158, constructed from sample accession ERS031816 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031816" refname="EG0449-sc-2011-04-20T12:02:09Z-1126922" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031816</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0449-sc-2011-04-20T12:02:09Z-1126922</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#7" center_name="SC" accession="ERX024470"> <IDENTIFIERS> <PRIMARY_ID>ERX024470</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875159, constructed from sample accession ERS031817 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031817" refname="EG0461-sc-2011-04-20T12:02:10Z-1126923" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031817</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0461-sc-2011-04-20T12:02:10Z-1126923</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#8" center_name="SC" accession="ERX024471"> <IDENTIFIERS> <PRIMARY_ID>ERX024471</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875160, constructed from sample accession ERS031818 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031818" refname="EG0469-sc-2011-04-20T12:02:10Z-1126924" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031818</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0469-sc-2011-04-20T12:02:10Z-1126924</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#9" center_name="SC" accession="ERX024472"> <IDENTIFIERS> <PRIMARY_ID>ERX024472</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875161, constructed from sample accession ERS031819 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031819" refname="EG0471-sc-2011-04-20T12:02:11Z-1126925" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031819</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0471-sc-2011-04-20T12:02:11Z-1126925</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#10" center_name="SC" accession="ERX024473"> <IDENTIFIERS> <PRIMARY_ID>ERX024473</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875162, constructed from sample accession ERS031820 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031820" refname="EG0474-sc-2011-04-20T12:02:12Z-1126926" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031820</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG0474-sc-2011-04-20T12:02:12Z-1126926</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#11" center_name="SC" accession="ERX024474"> <IDENTIFIERS> <PRIMARY_ID>ERX024474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875163, constructed from sample accession ERS031821 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031821" refname="EG1014-sc-2011-04-20T12:02:12Z-1126927" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031821</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1014-sc-2011-04-20T12:02:12Z-1126927</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#12" center_name="SC" accession="ERX024475"> <IDENTIFIERS> <PRIMARY_ID>ERX024475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875164, constructed from sample accession ERS031822 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031822" refname="EG1015-sc-2011-04-20T12:02:13Z-1126928" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031822</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1015-sc-2011-04-20T12:02:13Z-1126928</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#13" center_name="SC" accession="ERX024476"> <IDENTIFIERS> <PRIMARY_ID>ERX024476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875165, constructed from sample accession ERS031823 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031823" refname="EG1016-sc-2011-04-20T12:02:14Z-1126929" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031823</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1016-sc-2011-04-20T12:02:14Z-1126929</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#14" center_name="SC" accession="ERX024477"> <IDENTIFIERS> <PRIMARY_ID>ERX024477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875166, constructed from sample accession ERS031824 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031824" refname="EG1017-sc-2011-04-20T12:02:15Z-1126930" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031824</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1017-sc-2011-04-20T12:02:15Z-1126930</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#15" center_name="SC" accession="ERX024478"> <IDENTIFIERS> <PRIMARY_ID>ERX024478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875167, constructed from sample accession ERS031825 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031825" refname="EG1018-sc-2011-04-20T12:02:15Z-1126931" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031825</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1018-sc-2011-04-20T12:02:15Z-1126931</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#16" center_name="SC" accession="ERX024479"> <IDENTIFIERS> <PRIMARY_ID>ERX024479</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875168, constructed from sample accession ERS031826 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031826" refname="EG1019-sc-2011-04-20T12:02:16Z-1126932" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031826</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1019-sc-2011-04-20T12:02:16Z-1126932</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#17" center_name="SC" accession="ERX024480"> <IDENTIFIERS> <PRIMARY_ID>ERX024480</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875169, constructed from sample accession ERS031827 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031827" refname="EG1020-sc-2011-04-20T12:02:16Z-1126933" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031827</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1020-sc-2011-04-20T12:02:16Z-1126933</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#1" center_name="SC" accession="ERX024285"> <IDENTIFIERS> <PRIMARY_ID>ERX024285</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882083, constructed from sample accession ERS031877 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031877" refname="HUE49-sc-2011-04-20T12:02:50Z-1126983" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031877</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE49-sc-2011-04-20T12:02:50Z-1126983</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882083</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#18" center_name="SC" accession="ERX024481"> <IDENTIFIERS> <PRIMARY_ID>ERX024481</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875170, constructed from sample accession ERS031828 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031828" refname="EG1021-sc-2011-04-20T12:02:17Z-1126934" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031828</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1021-sc-2011-04-20T12:02:17Z-1126934</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875170</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#19" center_name="SC" accession="ERX024482"> <IDENTIFIERS> <PRIMARY_ID>ERX024482</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875171, constructed from sample accession ERS031829 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031829" refname="EG1022-sc-2011-04-20T12:02:18Z-1126935" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031829</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1022-sc-2011-04-20T12:02:18Z-1126935</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875171</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#20" center_name="SC" accession="ERX024483"> <IDENTIFIERS> <PRIMARY_ID>ERX024483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875172, constructed from sample accession ERS031830 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031830" refname="EG1023-sc-2011-04-20T12:02:19Z-1126936" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031830</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1023-sc-2011-04-20T12:02:19Z-1126936</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875172</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#21" center_name="SC" accession="ERX024484"> <IDENTIFIERS> <PRIMARY_ID>ERX024484</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875173, constructed from sample accession ERS031831 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031831" refname="EG1024-sc-2011-04-20T12:02:20Z-1126937" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031831</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1024-sc-2011-04-20T12:02:20Z-1126937</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875173</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_6#22" center_name="SC" accession="ERX024485"> <IDENTIFIERS> <PRIMARY_ID>ERX024485</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875174, constructed from sample accession ERS031832 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031832" refname="EG1025-sc-2011-04-20T12:02:20Z-1126938" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031832</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1025-sc-2011-04-20T12:02:20Z-1126938</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875174</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="237" NOMINAL_SDEV="63"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#1" center_name="SC" accession="ERX024486"> <IDENTIFIERS> <PRIMARY_ID>ERX024486</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875530, constructed from sample accession ERS031833 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031833" refname="EG1026-sc-2011-04-20T12:02:22Z-1126939" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031833</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1026-sc-2011-04-20T12:02:22Z-1126939</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875530</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#2" center_name="SC" accession="ERX024487"> <IDENTIFIERS> <PRIMARY_ID>ERX024487</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875531, constructed from sample accession ERS031834 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031834" refname="EG1027-sc-2011-04-20T12:02:22Z-1126940" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031834</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1027-sc-2011-04-20T12:02:22Z-1126940</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875531</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#3" center_name="SC" accession="ERX024488"> <IDENTIFIERS> <PRIMARY_ID>ERX024488</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875533, constructed from sample accession ERS031835 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031835" refname="EG1028-sc-2011-04-20T12:02:23Z-1126941" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031835</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1028-sc-2011-04-20T12:02:23Z-1126941</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875533</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#4" center_name="SC" accession="ERX024489"> <IDENTIFIERS> <PRIMARY_ID>ERX024489</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875534, constructed from sample accession ERS031836 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031836" refname="EG1029-sc-2011-04-20T12:02:24Z-1126942" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031836</PRIMARY_ID> <SUBMITTER_ID namespace="SC">EG1029-sc-2011-04-20T12:02:24Z-1126942</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875534</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#5" center_name="SC" accession="ERX024490"> <IDENTIFIERS> <PRIMARY_ID>ERX024490</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875535, constructed from sample accession ERS031837 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031837" refname="HUE01-sc-2011-04-20T12:02:25Z-1126943" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031837</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE01-sc-2011-04-20T12:02:25Z-1126943</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875535</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#6" center_name="SC" accession="ERX024491"> <IDENTIFIERS> <PRIMARY_ID>ERX024491</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875537, constructed from sample accession ERS031838 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031838" refname="HUE02-sc-2011-04-20T12:02:25Z-1126944" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031838</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE02-sc-2011-04-20T12:02:25Z-1126944</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875537</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#7" center_name="SC" accession="ERX024492"> <IDENTIFIERS> <PRIMARY_ID>ERX024492</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875538, constructed from sample accession ERS031839 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031839" refname="HUE03-sc-2011-04-20T12:02:26Z-1126945" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031839</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE03-sc-2011-04-20T12:02:26Z-1126945</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875538</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#8" center_name="SC" accession="ERX024493"> <IDENTIFIERS> <PRIMARY_ID>ERX024493</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875539, constructed from sample accession ERS031840 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031840" refname="HUE04-sc-2011-04-20T12:02:26Z-1126946" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031840</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE04-sc-2011-04-20T12:02:26Z-1126946</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875539</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#2" center_name="SC" accession="ERX024286"> <IDENTIFIERS> <PRIMARY_ID>ERX024286</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882084, constructed from sample accession ERS031878 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031878" refname="HUE50-sc-2011-04-20T12:02:51Z-1126984" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031878</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE50-sc-2011-04-20T12:02:51Z-1126984</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882084</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#3" center_name="SC" accession="ERX024287"> <IDENTIFIERS> <PRIMARY_ID>ERX024287</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882085, constructed from sample accession ERS031879 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031879" refname="HUE53-sc-2011-04-20T12:02:51Z-1126985" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031879</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE53-sc-2011-04-20T12:02:51Z-1126985</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882085</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#4" center_name="SC" accession="ERX024288"> <IDENTIFIERS> <PRIMARY_ID>ERX024288</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882086, constructed from sample accession ERS031880 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031880" refname="HUE54-sc-2011-04-20T12:02:52Z-1126986" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031880</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE54-sc-2011-04-20T12:02:52Z-1126986</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882086</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#5" center_name="SC" accession="ERX024289"> <IDENTIFIERS> <PRIMARY_ID>ERX024289</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882087, constructed from sample accession ERS031881 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031881" refname="HUE55-sc-2011-04-20T12:02:53Z-1126987" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031881</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE55-sc-2011-04-20T12:02:53Z-1126987</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882087</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#6" center_name="SC" accession="ERX024290"> <IDENTIFIERS> <PRIMARY_ID>ERX024290</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882088, constructed from sample accession ERS031882 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031882" refname="HUE56-sc-2011-04-20T12:02:54Z-1126988" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031882</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE56-sc-2011-04-20T12:02:54Z-1126988</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882088</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#7" center_name="SC" accession="ERX024291"> <IDENTIFIERS> <PRIMARY_ID>ERX024291</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882089, constructed from sample accession ERS031883 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031883" refname="HUE57-sc-2011-04-20T12:02:54Z-1126989" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031883</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE57-sc-2011-04-20T12:02:54Z-1126989</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882089</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#8" center_name="SC" accession="ERX024292"> <IDENTIFIERS> <PRIMARY_ID>ERX024292</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882090, constructed from sample accession ERS031884 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031884" refname="HUE58-sc-2011-04-20T12:02:55Z-1126990" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031884</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE58-sc-2011-04-20T12:02:55Z-1126990</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882090</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#9" center_name="SC" accession="ERX024293"> <IDENTIFIERS> <PRIMARY_ID>ERX024293</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882091, constructed from sample accession ERS031885 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031885" refname="HUE60-sc-2011-04-20T12:02:55Z-1126991" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031885</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE60-sc-2011-04-20T12:02:55Z-1126991</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882091</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#10" center_name="SC" accession="ERX024294"> <IDENTIFIERS> <PRIMARY_ID>ERX024294</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882092, constructed from sample accession ERS031886 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031886" refname="HUE61-sc-2011-04-20T12:02:56Z-1126992" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031886</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE61-sc-2011-04-20T12:02:56Z-1126992</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882092</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#11" center_name="SC" accession="ERX024295"> <IDENTIFIERS> <PRIMARY_ID>ERX024295</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882093, constructed from sample accession ERS031887 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031887" refname="HUE62-sc-2011-04-20T12:02:56Z-1126993" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031887</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE62-sc-2011-04-20T12:02:56Z-1126993</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882093</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#12" center_name="SC" accession="ERX024296"> <IDENTIFIERS> <PRIMARY_ID>ERX024296</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882094, constructed from sample accession ERS031888 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031888" refname="HUE63-sc-2011-04-20T12:02:58Z-1126994" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031888</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE63-sc-2011-04-20T12:02:58Z-1126994</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882094</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#13" center_name="SC" accession="ERX024297"> <IDENTIFIERS> <PRIMARY_ID>ERX024297</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882095, constructed from sample accession ERS031889 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031889" refname="HUE64-sc-2011-04-20T12:02:58Z-1126995" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031889</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE64-sc-2011-04-20T12:02:58Z-1126995</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882095</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#14" center_name="SC" accession="ERX024298"> <IDENTIFIERS> <PRIMARY_ID>ERX024298</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882096, constructed from sample accession ERS031890 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031890" refname="HUE65-sc-2011-04-20T12:02:59Z-1126996" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031890</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE65-sc-2011-04-20T12:02:59Z-1126996</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882096</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#9" center_name="SC" accession="ERX024494"> <IDENTIFIERS> <PRIMARY_ID>ERX024494</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875540, constructed from sample accession ERS031841 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031841" refname="HUE05-sc-2011-04-20T12:02:27Z-1126947" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031841</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE05-sc-2011-04-20T12:02:27Z-1126947</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875540</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#10" center_name="SC" accession="ERX024495"> <IDENTIFIERS> <PRIMARY_ID>ERX024495</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875541, constructed from sample accession ERS031842 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031842" refname="HUE06-sc-2011-04-20T12:02:27Z-1126948" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031842</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE06-sc-2011-04-20T12:02:27Z-1126948</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875541</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#11" center_name="SC" accession="ERX024496"> <IDENTIFIERS> <PRIMARY_ID>ERX024496</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875544, constructed from sample accession ERS031843 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031843" refname="HUE07-sc-2011-04-20T12:02:28Z-1126949" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031843</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE07-sc-2011-04-20T12:02:28Z-1126949</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875544</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#12" center_name="SC" accession="ERX024497"> <IDENTIFIERS> <PRIMARY_ID>ERX024497</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875545, constructed from sample accession ERS031844 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031844" refname="HUE08-sc-2011-04-20T12:02:29Z-1126950" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031844</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE08-sc-2011-04-20T12:02:29Z-1126950</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875545</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#13" center_name="SC" accession="ERX024498"> <IDENTIFIERS> <PRIMARY_ID>ERX024498</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875547, constructed from sample accession ERS031845 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031845" refname="HUE09-sc-2011-04-20T12:02:30Z-1126951" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031845</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE09-sc-2011-04-20T12:02:30Z-1126951</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875547</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#14" center_name="SC" accession="ERX024499"> <IDENTIFIERS> <PRIMARY_ID>ERX024499</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875548, constructed from sample accession ERS031846 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031846" refname="HUE10-sc-2011-04-20T12:02:30Z-1126952" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031846</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE10-sc-2011-04-20T12:02:30Z-1126952</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875548</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#15" center_name="SC" accession="ERX024500"> <IDENTIFIERS> <PRIMARY_ID>ERX024500</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875550, constructed from sample accession ERS031847 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031847" refname="HUE12-sc-2011-04-20T12:02:31Z-1126953" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031847</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE12-sc-2011-04-20T12:02:31Z-1126953</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875550</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#16" center_name="SC" accession="ERX024501"> <IDENTIFIERS> <PRIMARY_ID>ERX024501</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875551, constructed from sample accession ERS031848 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031848" refname="HUE13-sc-2011-04-20T12:02:31Z-1126954" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031848</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE13-sc-2011-04-20T12:02:31Z-1126954</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875551</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#17" center_name="SC" accession="ERX024502"> <IDENTIFIERS> <PRIMARY_ID>ERX024502</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875552, constructed from sample accession ERS031849 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031849" refname="HUE14-sc-2011-04-20T12:02:32Z-1126955" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031849</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE14-sc-2011-04-20T12:02:32Z-1126955</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875552</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#18" center_name="SC" accession="ERX024503"> <IDENTIFIERS> <PRIMARY_ID>ERX024503</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875553, constructed from sample accession ERS031850 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031850" refname="HUE15-sc-2011-04-20T12:02:32Z-1126956" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031850</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE15-sc-2011-04-20T12:02:32Z-1126956</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875553</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#19" center_name="SC" accession="ERX024504"> <IDENTIFIERS> <PRIMARY_ID>ERX024504</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875554, constructed from sample accession ERS031851 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031851" refname="HUE16-sc-2011-04-20T12:02:33Z-1126957" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031851</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE16-sc-2011-04-20T12:02:33Z-1126957</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875554</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#20" center_name="SC" accession="ERX024505"> <IDENTIFIERS> <PRIMARY_ID>ERX024505</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875555, constructed from sample accession ERS031852 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031852" refname="HUE17-sc-2011-04-20T12:02:34Z-1126958" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031852</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE17-sc-2011-04-20T12:02:34Z-1126958</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875555</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#21" center_name="SC" accession="ERX024506"> <IDENTIFIERS> <PRIMARY_ID>ERX024506</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875556, constructed from sample accession ERS031853 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031853" refname="HUE18-sc-2011-04-20T12:02:35Z-1126959" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031853</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE18-sc-2011-04-20T12:02:35Z-1126959</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875556</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#15" center_name="SC" accession="ERX024299"> <IDENTIFIERS> <PRIMARY_ID>ERX024299</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882097, constructed from sample accession ERS031891 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031891" refname="HUE66-sc-2011-04-20T12:02:59Z-1126997" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031891</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE66-sc-2011-04-20T12:02:59Z-1126997</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882097</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#16" center_name="SC" accession="ERX024300"> <IDENTIFIERS> <PRIMARY_ID>ERX024300</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882098, constructed from sample accession ERS031892 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031892" refname="HUE67-sc-2011-04-20T12:03:00Z-1126998" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031892</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE67-sc-2011-04-20T12:03:00Z-1126998</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882098</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#17" center_name="SC" accession="ERX024301"> <IDENTIFIERS> <PRIMARY_ID>ERX024301</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882099, constructed from sample accession ERS031893 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031893" refname="HUE68-sc-2011-04-20T12:03:00Z-1126999" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031893</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE68-sc-2011-04-20T12:03:00Z-1126999</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882099</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#18" center_name="SC" accession="ERX024302"> <IDENTIFIERS> <PRIMARY_ID>ERX024302</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882100, constructed from sample accession ERS031894 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031894" refname="KH01-sc-2011-04-20T12:03:01Z-1127000" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031894</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH01-sc-2011-04-20T12:03:01Z-1127000</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882100</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#19" center_name="SC" accession="ERX024303"> <IDENTIFIERS> <PRIMARY_ID>ERX024303</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882101, constructed from sample accession ERS031895 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031895" refname="KH02-sc-2011-04-20T12:03:02Z-1127001" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031895</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH02-sc-2011-04-20T12:03:02Z-1127001</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882101</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#20" center_name="SC" accession="ERX024304"> <IDENTIFIERS> <PRIMARY_ID>ERX024304</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882102, constructed from sample accession ERS031896 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031896" refname="KH04-sc-2011-04-20T12:03:03Z-1127002" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031896</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH04-sc-2011-04-20T12:03:03Z-1127002</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882102</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#21" center_name="SC" accession="ERX024305"> <IDENTIFIERS> <PRIMARY_ID>ERX024305</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882103, constructed from sample accession ERS031897 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031897" refname="KH05-sc-2011-04-20T12:03:03Z-1127003" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031897</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH05-sc-2011-04-20T12:03:03Z-1127003</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882103</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_1#22" center_name="SC" accession="ERX024306"> <IDENTIFIERS> <PRIMARY_ID>ERX024306</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_1#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882104, constructed from sample accession ERS031898 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_1). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031898" refname="KH06-sc-2011-04-20T12:03:04Z-1127004" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031898</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH06-sc-2011-04-20T12:03:04Z-1127004</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882104</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="247" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#1" center_name="SC" accession="ERX024307"> <IDENTIFIERS> <PRIMARY_ID>ERX024307</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882138, constructed from sample accession ERS031899 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031899" refname="KH07-sc-2011-04-20T12:03:04Z-1127005" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031899</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH07-sc-2011-04-20T12:03:04Z-1127005</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882138</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#2" center_name="SC" accession="ERX024308"> <IDENTIFIERS> <PRIMARY_ID>ERX024308</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882151, constructed from sample accession ERS031900 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031900" refname="KH09-sc-2011-04-20T12:03:05Z-1127006" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031900</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH09-sc-2011-04-20T12:03:05Z-1127006</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882151</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#3" center_name="SC" accession="ERX024309"> <IDENTIFIERS> <PRIMARY_ID>ERX024309</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882152, constructed from sample accession ERS031901 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031901" refname="KH10-sc-2011-04-20T12:03:05Z-1127007" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031901</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH10-sc-2011-04-20T12:03:05Z-1127007</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882152</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#4" center_name="SC" accession="ERX024310"> <IDENTIFIERS> <PRIMARY_ID>ERX024310</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882153, constructed from sample accession ERS031902 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031902" refname="KH11-sc-2011-04-20T12:03:06Z-1127008" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031902</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH11-sc-2011-04-20T12:03:06Z-1127008</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882153</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#5" center_name="SC" accession="ERX024311"> <IDENTIFIERS> <PRIMARY_ID>ERX024311</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882154, constructed from sample accession ERS031903 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031903" refname="KH12-sc-2011-04-20T12:03:07Z-1127009" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031903</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH12-sc-2011-04-20T12:03:07Z-1127009</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882154</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_7#22" center_name="SC" accession="ERX024507"> <IDENTIFIERS> <PRIMARY_ID>ERX024507</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_7#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875557, constructed from sample accession ERS031854 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_7). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031854" refname="HUE19-sc-2011-04-20T12:02:35Z-1126960" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031854</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE19-sc-2011-04-20T12:02:35Z-1126960</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875557</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="240" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#1" center_name="SC" accession="ERX024508"> <IDENTIFIERS> <PRIMARY_ID>ERX024508</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875581, constructed from sample accession ERS031855 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031855" refname="HUE20-sc-2011-04-20T12:02:36Z-1126961" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031855</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE20-sc-2011-04-20T12:02:36Z-1126961</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875581</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#2" center_name="SC" accession="ERX024509"> <IDENTIFIERS> <PRIMARY_ID>ERX024509</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875582, constructed from sample accession ERS031856 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031856" refname="HUE21-sc-2011-04-20T12:02:36Z-1126962" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031856</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE21-sc-2011-04-20T12:02:36Z-1126962</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875582</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#3" center_name="SC" accession="ERX024510"> <IDENTIFIERS> <PRIMARY_ID>ERX024510</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875583, constructed from sample accession ERS031857 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031857" refname="HUE22-sc-2011-04-20T12:02:37Z-1126963" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031857</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE22-sc-2011-04-20T12:02:37Z-1126963</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875583</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#4" center_name="SC" accession="ERX024511"> <IDENTIFIERS> <PRIMARY_ID>ERX024511</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875584, constructed from sample accession ERS031858 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031858" refname="HUE23-sc-2011-04-20T12:02:38Z-1126964" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031858</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE23-sc-2011-04-20T12:02:38Z-1126964</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875584</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#5" center_name="SC" accession="ERX024512"> <IDENTIFIERS> <PRIMARY_ID>ERX024512</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875585, constructed from sample accession ERS031859 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031859" refname="HUE24-sc-2011-04-20T12:02:39Z-1126965" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031859</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE24-sc-2011-04-20T12:02:39Z-1126965</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875585</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#6" center_name="SC" accession="ERX024513"> <IDENTIFIERS> <PRIMARY_ID>ERX024513</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875586, constructed from sample accession ERS031860 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031860" refname="HUE25-sc-2011-04-20T12:02:39Z-1126966" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031860</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE25-sc-2011-04-20T12:02:39Z-1126966</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875586</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#7" center_name="SC" accession="ERX024514"> <IDENTIFIERS> <PRIMARY_ID>ERX024514</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875587, constructed from sample accession ERS031861 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031861" refname="HUE26-sc-2011-04-20T12:02:40Z-1126967" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031861</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE26-sc-2011-04-20T12:02:40Z-1126967</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875587</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#8" center_name="SC" accession="ERX024515"> <IDENTIFIERS> <PRIMARY_ID>ERX024515</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875588, constructed from sample accession ERS031862 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031862" refname="HUE27-sc-2011-04-20T12:02:40Z-1126968" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031862</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE27-sc-2011-04-20T12:02:40Z-1126968</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875588</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#9" center_name="SC" accession="ERX024516"> <IDENTIFIERS> <PRIMARY_ID>ERX024516</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875589, constructed from sample accession ERS031863 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031863" refname="HUE29-sc-2011-04-20T12:02:41Z-1126969" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031863</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE29-sc-2011-04-20T12:02:41Z-1126969</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875589</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#10" center_name="SC" accession="ERX024517"> <IDENTIFIERS> <PRIMARY_ID>ERX024517</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875590, constructed from sample accession ERS031864 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031864" refname="HUE30-sc-2011-04-20T12:02:41Z-1126970" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031864</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE30-sc-2011-04-20T12:02:41Z-1126970</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875590</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#11" center_name="SC" accession="ERX024518"> <IDENTIFIERS> <PRIMARY_ID>ERX024518</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875591, constructed from sample accession ERS031865 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031865" refname="HUE31-sc-2011-04-20T12:02:42Z-1126971" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031865</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE31-sc-2011-04-20T12:02:42Z-1126971</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875591</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#12" center_name="SC" accession="ERX024519"> <IDENTIFIERS> <PRIMARY_ID>ERX024519</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875592, constructed from sample accession ERS031866 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031866" refname="HUE32-sc-2011-04-20T12:02:43Z-1126972" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031866</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE32-sc-2011-04-20T12:02:43Z-1126972</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875592</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#6" center_name="SC" accession="ERX024312"> <IDENTIFIERS> <PRIMARY_ID>ERX024312</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882155, constructed from sample accession ERS031904 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031904" refname="KH13-sc-2011-04-20T12:03:08Z-1127010" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031904</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH13-sc-2011-04-20T12:03:08Z-1127010</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882155</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#7" center_name="SC" accession="ERX024313"> <IDENTIFIERS> <PRIMARY_ID>ERX024313</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882156, constructed from sample accession ERS031905 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031905" refname="KH14-sc-2011-04-20T12:03:08Z-1127011" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031905</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH14-sc-2011-04-20T12:03:08Z-1127011</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882156</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#8" center_name="SC" accession="ERX024314"> <IDENTIFIERS> <PRIMARY_ID>ERX024314</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882157, constructed from sample accession ERS031906 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031906" refname="KH15-sc-2011-04-20T12:03:09Z-1127012" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031906</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH15-sc-2011-04-20T12:03:09Z-1127012</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882157</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#9" center_name="SC" accession="ERX024315"> <IDENTIFIERS> <PRIMARY_ID>ERX024315</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882158, constructed from sample accession ERS031907 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031907" refname="KH16-sc-2011-04-20T12:03:09Z-1127013" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031907</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH16-sc-2011-04-20T12:03:09Z-1127013</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882158</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#10" center_name="SC" accession="ERX024316"> <IDENTIFIERS> <PRIMARY_ID>ERX024316</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882159, constructed from sample accession ERS031908 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031908" refname="KH17-sc-2011-04-20T12:03:10Z-1127014" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031908</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH17-sc-2011-04-20T12:03:10Z-1127014</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882159</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#11" center_name="SC" accession="ERX024317"> <IDENTIFIERS> <PRIMARY_ID>ERX024317</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882160, constructed from sample accession ERS031909 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031909" refname="KH18-sc-2011-04-20T12:03:12Z-1127015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031909</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH18-sc-2011-04-20T12:03:12Z-1127015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882160</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#12" center_name="SC" accession="ERX024318"> <IDENTIFIERS> <PRIMARY_ID>ERX024318</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882161, constructed from sample accession ERS031910 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031910" refname="KH19-sc-2011-04-20T12:03:13Z-1127016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031910</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH19-sc-2011-04-20T12:03:13Z-1127016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882161</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#13" center_name="SC" accession="ERX024319"> <IDENTIFIERS> <PRIMARY_ID>ERX024319</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882162, constructed from sample accession ERS031911 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031911" refname="KH20-sc-2011-04-20T12:03:14Z-1127017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031911</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH20-sc-2011-04-20T12:03:14Z-1127017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882162</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#14" center_name="SC" accession="ERX024320"> <IDENTIFIERS> <PRIMARY_ID>ERX024320</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882163, constructed from sample accession ERS031912 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031912" refname="KH21-sc-2011-04-20T12:03:14Z-1127018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031912</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH21-sc-2011-04-20T12:03:14Z-1127018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882163</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#15" center_name="SC" accession="ERX024321"> <IDENTIFIERS> <PRIMARY_ID>ERX024321</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882164, constructed from sample accession ERS031913 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031913" refname="KH23-sc-2011-04-20T12:03:15Z-1127019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031913</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH23-sc-2011-04-20T12:03:15Z-1127019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882164</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#16" center_name="SC" accession="ERX024322"> <IDENTIFIERS> <PRIMARY_ID>ERX024322</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882165, constructed from sample accession ERS031914 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031914" refname="KH24-sc-2011-04-20T12:03:15Z-1127020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031914</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH24-sc-2011-04-20T12:03:15Z-1127020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882165</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#17" center_name="SC" accession="ERX024323"> <IDENTIFIERS> <PRIMARY_ID>ERX024323</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882166, constructed from sample accession ERS031915 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031915" refname="KH25-sc-2011-04-20T12:03:16Z-1127021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031915</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH25-sc-2011-04-20T12:03:16Z-1127021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882166</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#18" center_name="SC" accession="ERX024324"> <IDENTIFIERS> <PRIMARY_ID>ERX024324</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882167, constructed from sample accession ERS031916 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031916" refname="KH26-sc-2011-04-20T12:03:16Z-1127022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031916</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH26-sc-2011-04-20T12:03:16Z-1127022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882167</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#13" center_name="SC" accession="ERX024520"> <IDENTIFIERS> <PRIMARY_ID>ERX024520</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875593, constructed from sample accession ERS031867 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031867" refname="HUE33-sc-2011-04-20T12:02:44Z-1126973" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031867</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE33-sc-2011-04-20T12:02:44Z-1126973</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875593</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#14" center_name="SC" accession="ERX024521"> <IDENTIFIERS> <PRIMARY_ID>ERX024521</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875594, constructed from sample accession ERS031868 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031868" refname="HUE34-sc-2011-04-20T12:02:44Z-1126974" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031868</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE34-sc-2011-04-20T12:02:44Z-1126974</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875594</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#15" center_name="SC" accession="ERX024522"> <IDENTIFIERS> <PRIMARY_ID>ERX024522</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875595, constructed from sample accession ERS031869 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031869" refname="HUE35-sc-2011-04-20T12:02:45Z-1126975" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031869</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE35-sc-2011-04-20T12:02:45Z-1126975</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875595</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#16" center_name="SC" accession="ERX024523"> <IDENTIFIERS> <PRIMARY_ID>ERX024523</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875596, constructed from sample accession ERS031870 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031870" refname="HUE36-sc-2011-04-20T12:02:45Z-1126976" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031870</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE36-sc-2011-04-20T12:02:45Z-1126976</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875596</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#17" center_name="SC" accession="ERX024524"> <IDENTIFIERS> <PRIMARY_ID>ERX024524</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875597, constructed from sample accession ERS031871 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031871" refname="HUE40-sc-2011-04-20T12:02:46Z-1126977" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031871</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE40-sc-2011-04-20T12:02:46Z-1126977</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875597</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#18" center_name="SC" accession="ERX024525"> <IDENTIFIERS> <PRIMARY_ID>ERX024525</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875598, constructed from sample accession ERS031872 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031872" refname="HUE42-sc-2011-04-20T12:02:46Z-1126978" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031872</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE42-sc-2011-04-20T12:02:46Z-1126978</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875598</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#19" center_name="SC" accession="ERX024526"> <IDENTIFIERS> <PRIMARY_ID>ERX024526</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875599, constructed from sample accession ERS031873 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031873" refname="HUE43-sc-2011-04-20T12:02:48Z-1126979" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031873</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE43-sc-2011-04-20T12:02:48Z-1126979</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875599</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#20" center_name="SC" accession="ERX024527"> <IDENTIFIERS> <PRIMARY_ID>ERX024527</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875600, constructed from sample accession ERS031874 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031874" refname="HUE46-sc-2011-04-20T12:02:49Z-1126980" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031874</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE46-sc-2011-04-20T12:02:49Z-1126980</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875600</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#21" center_name="SC" accession="ERX024528"> <IDENTIFIERS> <PRIMARY_ID>ERX024528</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875601, constructed from sample accession ERS031875 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031875" refname="HUE47-sc-2011-04-20T12:02:49Z-1126981" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031875</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE47-sc-2011-04-20T12:02:49Z-1126981</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875601</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6581_8#22" center_name="SC" accession="ERX024529"> <IDENTIFIERS> <PRIMARY_ID>ERX024529</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6581_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2875602, constructed from sample accession ERS031876 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6581_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031876" refname="HUE48-sc-2011-04-20T12:02:50Z-1126982" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031876</PRIMARY_ID> <SUBMITTER_ID namespace="SC">HUE48-sc-2011-04-20T12:02:50Z-1126982</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2875602</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="238" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#19" center_name="SC" accession="ERX024325"> <IDENTIFIERS> <PRIMARY_ID>ERX024325</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882168, constructed from sample accession ERS031917 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031917" refname="KH27-sc-2011-04-20T12:03:18Z-1127023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031917</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH27-sc-2011-04-20T12:03:18Z-1127023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882168</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#20" center_name="SC" accession="ERX024326"> <IDENTIFIERS> <PRIMARY_ID>ERX024326</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882169, constructed from sample accession ERS031918 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031918" refname="KH28-sc-2011-04-20T12:03:19Z-1127024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031918</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH28-sc-2011-04-20T12:03:19Z-1127024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882169</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#21" center_name="SC" accession="ERX024327"> <IDENTIFIERS> <PRIMARY_ID>ERX024327</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882170, constructed from sample accession ERS031919 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031919" refname="KH29-sc-2011-04-20T12:03:19Z-1127025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031919</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH29-sc-2011-04-20T12:03:19Z-1127025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882170</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_2#22" center_name="SC" accession="ERX024328"> <IDENTIFIERS> <PRIMARY_ID>ERX024328</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882171, constructed from sample accession ERS031920 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031920" refname="KH30-sc-2011-04-20T12:03:20Z-1127026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031920</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH30-sc-2011-04-20T12:03:20Z-1127026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882171</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="68"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#1" center_name="SC" accession="ERX024329"> <IDENTIFIERS> <PRIMARY_ID>ERX024329</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882195, constructed from sample accession ERS031921 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031921" refname="KH32-sc-2011-04-20T12:03:21Z-1127027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031921</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH32-sc-2011-04-20T12:03:21Z-1127027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882195</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#2" center_name="SC" accession="ERX024330"> <IDENTIFIERS> <PRIMARY_ID>ERX024330</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882196, constructed from sample accession ERS031922 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031922" refname="KH33-sc-2011-04-20T12:03:21Z-1127028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031922</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH33-sc-2011-04-20T12:03:21Z-1127028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882196</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#3" center_name="SC" accession="ERX024331"> <IDENTIFIERS> <PRIMARY_ID>ERX024331</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882197, constructed from sample accession ERS031923 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031923" refname="KH34-sc-2011-04-20T12:03:22Z-1127029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031923</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH34-sc-2011-04-20T12:03:22Z-1127029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882197</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#4" center_name="SC" accession="ERX024332"> <IDENTIFIERS> <PRIMARY_ID>ERX024332</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882198, constructed from sample accession ERS031924 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031924" refname="KH35-sc-2011-04-20T12:03:23Z-1127030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031924</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH35-sc-2011-04-20T12:03:23Z-1127030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882198</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#5" center_name="SC" accession="ERX024333"> <IDENTIFIERS> <PRIMARY_ID>ERX024333</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882199, constructed from sample accession ERS031925 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031925" refname="KH37-sc-2011-04-20T12:03:24Z-1127031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031925</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH37-sc-2011-04-20T12:03:24Z-1127031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882199</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#6" center_name="SC" accession="ERX024334"> <IDENTIFIERS> <PRIMARY_ID>ERX024334</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882200, constructed from sample accession ERS031926 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031926" refname="KH38-sc-2011-04-20T12:03:25Z-1127032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031926</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH38-sc-2011-04-20T12:03:25Z-1127032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882200</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#7" center_name="SC" accession="ERX024335"> <IDENTIFIERS> <PRIMARY_ID>ERX024335</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882201, constructed from sample accession ERS031927 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031927" refname="KH39-sc-2011-04-20T12:03:25Z-1127033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031927</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH39-sc-2011-04-20T12:03:25Z-1127033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882201</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#8" center_name="SC" accession="ERX024336"> <IDENTIFIERS> <PRIMARY_ID>ERX024336</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882202, constructed from sample accession ERS031928 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031928" refname="KH40-sc-2011-04-20T12:03:26Z-1127034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031928</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH40-sc-2011-04-20T12:03:26Z-1127034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882202</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#9" center_name="SC" accession="ERX024337"> <IDENTIFIERS> <PRIMARY_ID>ERX024337</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882203, constructed from sample accession ERS031929 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031929" refname="KH41-sc-2011-04-20T12:03:26Z-1127035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031929</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH41-sc-2011-04-20T12:03:26Z-1127035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882203</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#10" center_name="SC" accession="ERX024338"> <IDENTIFIERS> <PRIMARY_ID>ERX024338</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882204, constructed from sample accession ERS031930 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031930" refname="KH42-sc-2011-04-20T12:03:27Z-1127036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH42-sc-2011-04-20T12:03:27Z-1127036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882204</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#11" center_name="SC" accession="ERX024339"> <IDENTIFIERS> <PRIMARY_ID>ERX024339</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882205, constructed from sample accession ERS031931 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031931" refname="KH43-sc-2011-04-20T12:03:27Z-1127037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH43-sc-2011-04-20T12:03:27Z-1127037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882205</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#12" center_name="SC" accession="ERX024340"> <IDENTIFIERS> <PRIMARY_ID>ERX024340</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882206, constructed from sample accession ERS031932 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031932" refname="KH45-sc-2011-04-20T12:03:29Z-1127038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH45-sc-2011-04-20T12:03:29Z-1127038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882206</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#13" center_name="SC" accession="ERX024341"> <IDENTIFIERS> <PRIMARY_ID>ERX024341</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882207, constructed from sample accession ERS031933 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031933" refname="KH47-sc-2011-04-20T12:03:30Z-1127039" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH47-sc-2011-04-20T12:03:30Z-1127039</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882207</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#14" center_name="SC" accession="ERX024342"> <IDENTIFIERS> <PRIMARY_ID>ERX024342</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882208, constructed from sample accession ERS031934 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031934" refname="KH48-sc-2011-04-20T12:03:30Z-1127040" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH48-sc-2011-04-20T12:03:30Z-1127040</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882208</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="14" min_match="7" max_mismatch="1" match_edge="end">TCTCGGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#15" center_name="SC" accession="ERX024343"> <IDENTIFIERS> <PRIMARY_ID>ERX024343</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882209, constructed from sample accession ERS031935 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031935" refname="KH49-sc-2011-04-20T12:03:31Z-1127041" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH49-sc-2011-04-20T12:03:31Z-1127041</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882209</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="15" min_match="7" max_mismatch="1" match_edge="end">TAAGCGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#16" center_name="SC" accession="ERX024344"> <IDENTIFIERS> <PRIMARY_ID>ERX024344</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882210, constructed from sample accession ERS031936 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031936" refname="KH50-sc-2011-04-20T12:03:31Z-1127042" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH50-sc-2011-04-20T12:03:31Z-1127042</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882210</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="16" min_match="7" max_mismatch="1" match_edge="end">TCCGTCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#17" center_name="SC" accession="ERX024345"> <IDENTIFIERS> <PRIMARY_ID>ERX024345</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882211, constructed from sample accession ERS031937 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031937" refname="KH52-sc-2011-04-20T12:03:32Z-1127043" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH52-sc-2011-04-20T12:03:32Z-1127043</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882211</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="17" min_match="7" max_mismatch="1" match_edge="end">TGTACCTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#18" center_name="SC" accession="ERX024346"> <IDENTIFIERS> <PRIMARY_ID>ERX024346</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882212, constructed from sample accession ERS031938 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031938" refname="KH53-sc-2011-04-20T12:03:32Z-1127044" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH53-sc-2011-04-20T12:03:32Z-1127044</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882212</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="18" min_match="7" max_mismatch="1" match_edge="end">TTCTGTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#19" center_name="SC" accession="ERX024347"> <IDENTIFIERS> <PRIMARY_ID>ERX024347</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882213, constructed from sample accession ERS031939 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031939" refname="KH54-sc-2011-04-20T12:03:33Z-1127045" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH54-sc-2011-04-20T12:03:33Z-1127045</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882213</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="19" min_match="7" max_mismatch="1" match_edge="end">TCTGCTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#20" center_name="SC" accession="ERX024348"> <IDENTIFIERS> <PRIMARY_ID>ERX024348</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882214, constructed from sample accession ERS031940 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031940" refname="KH55-sc-2011-04-20T12:03:34Z-1127046" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH55-sc-2011-04-20T12:03:34Z-1127046</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882214</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="20" min_match="7" max_mismatch="1" match_edge="end">TTGGAGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#21" center_name="SC" accession="ERX024349"> <IDENTIFIERS> <PRIMARY_ID>ERX024349</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882215, constructed from sample accession ERS031941 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031941" refname="KH57-sc-2011-04-20T12:03:35Z-1127047" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KH57-sc-2011-04-20T12:03:35Z-1127047</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882215</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="21" min_match="7" max_mismatch="1" match_edge="end">TCGAGCGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_3#22" center_name="SC" accession="ERX024350"> <IDENTIFIERS> <PRIMARY_ID>ERX024350</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_3#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882216, constructed from sample accession ERS031942 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_3). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031942" refname="KIEM-sc-2011-04-20T12:03:36Z-1127048" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">KIEM-sc-2011-04-20T12:03:36Z-1127048</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882216</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="22" min_match="7" max_mismatch="1" match_edge="end">TGATACGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#1" center_name="SC" accession="ERX024351"> <IDENTIFIERS> <PRIMARY_ID>ERX024351</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882310, constructed from sample accession ERS031943 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031943" refname="MS0001-sc-2011-04-20T12:03:36Z-1127049" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0001-sc-2011-04-20T12:03:36Z-1127049</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882310</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="1" min_match="7" max_mismatch="1" match_edge="end">ATCACGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#2" center_name="SC" accession="ERX024352"> <IDENTIFIERS> <PRIMARY_ID>ERX024352</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882311, constructed from sample accession ERS031944 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031944" refname="MS0002-sc-2011-04-20T12:03:37Z-1127050" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0002-sc-2011-04-20T12:03:37Z-1127050</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882311</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="2" min_match="7" max_mismatch="1" match_edge="end">CGATGTTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#3" center_name="SC" accession="ERX024353"> <IDENTIFIERS> <PRIMARY_ID>ERX024353</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882312, constructed from sample accession ERS031945 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031945" refname="MS0005-sc-2011-04-20T12:03:37Z-1127051" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0005-sc-2011-04-20T12:03:37Z-1127051</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882312</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="3" min_match="7" max_mismatch="1" match_edge="end">TTAGGCAT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#4" center_name="SC" accession="ERX024354"> <IDENTIFIERS> <PRIMARY_ID>ERX024354</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882313, constructed from sample accession ERS031946 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031946" refname="MS0010-sc-2011-04-20T12:03:38Z-1127052" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0010-sc-2011-04-20T12:03:38Z-1127052</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882313</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="4" min_match="7" max_mismatch="1" match_edge="end">TGACCACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#5" center_name="SC" accession="ERX024355"> <IDENTIFIERS> <PRIMARY_ID>ERX024355</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882314, constructed from sample accession ERS031947 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031947" refname="MS0012-sc-2011-04-20T12:03:39Z-1127053" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0012-sc-2011-04-20T12:03:39Z-1127053</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882314</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="5" min_match="7" max_mismatch="1" match_edge="end">ACAGTGGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#6" center_name="SC" accession="ERX024356"> <IDENTIFIERS> <PRIMARY_ID>ERX024356</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882315, constructed from sample accession ERS031948 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031948" refname="MS0014-sc-2011-04-20T12:03:40Z-1127054" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0014-sc-2011-04-20T12:03:40Z-1127054</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882315</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="6" min_match="7" max_mismatch="1" match_edge="end">GCCAATGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#7" center_name="SC" accession="ERX024357"> <IDENTIFIERS> <PRIMARY_ID>ERX024357</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882316, constructed from sample accession ERS031949 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031949" refname="MS0019-sc-2011-04-20T12:03:40Z-1127055" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0019-sc-2011-04-20T12:03:40Z-1127055</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882316</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="7" min_match="7" max_mismatch="1" match_edge="end">CAGATCTG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#8" center_name="SC" accession="ERX024358"> <IDENTIFIERS> <PRIMARY_ID>ERX024358</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882317, constructed from sample accession ERS031950 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031950" refname="MS0020-sc-2011-04-20T12:03:41Z-1127056" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0020-sc-2011-04-20T12:03:41Z-1127056</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882317</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="8" min_match="7" max_mismatch="1" match_edge="end">ACTTGATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#9" center_name="SC" accession="ERX024359"> <IDENTIFIERS> <PRIMARY_ID>ERX024359</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882318, constructed from sample accession ERS031951 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031951" refname="MS0021-sc-2011-04-20T12:03:41Z-1127057" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0021-sc-2011-04-20T12:03:41Z-1127057</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882318</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="9" min_match="7" max_mismatch="1" match_edge="end">GATCAGCG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#10" center_name="SC" accession="ERX024360"> <IDENTIFIERS> <PRIMARY_ID>ERX024360</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882319, constructed from sample accession ERS031952 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031952" refname="MS0022-sc-2011-04-20T12:03:42Z-1127058" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0022-sc-2011-04-20T12:03:42Z-1127058</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882319</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="10" min_match="7" max_mismatch="1" match_edge="end">TAGCTTGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#11" center_name="SC" accession="ERX024361"> <IDENTIFIERS> <PRIMARY_ID>ERX024361</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882320, constructed from sample accession ERS031953 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031953" refname="MS0025-sc-2011-04-20T12:03:43Z-1127059" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0025-sc-2011-04-20T12:03:43Z-1127059</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882320</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="11" min_match="7" max_mismatch="1" match_edge="end">GGCTACAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#12" center_name="SC" accession="ERX024362"> <IDENTIFIERS> <PRIMARY_ID>ERX024362</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882321, constructed from sample accession ERS031954 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031954" refname="MS0026-sc-2011-04-20T12:03:44Z-1127060" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0026-sc-2011-04-20T12:03:44Z-1127060</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882321</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="12" min_match="7" max_mismatch="1" match_edge="end">CTTGTACT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6578_4#13" center_name="SC" accession="ERX024363"> <IDENTIFIERS> <PRIMARY_ID>ERX024363</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6578_4#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000631" refname="Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Temporal___geographical_Shigella_genus_diversity_in_Southern_Vietnam_1994_2011-sc-2011-04-20T11:38:01Z-1817</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2882322, constructed from sample accession ERS031955 for study accession ERP000631. This is part of an Illumina multiplexed sequencing run (6578_4). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS031955" refname="MS0029-sc-2011-04-20T12:03:45Z-1127061" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS031955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MS0029-sc-2011-04-20T12:03:45Z-1127061</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2882322</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="248" NOMINAL_SDEV="71"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>barcode_tag</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL read_group_tag="13" min_match="7" max_mismatch="1" match_edge="end">TGGTTGTT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>84</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>