ERX028778 SC_EXP_4132_1 <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 85718, constructed from sample accession ERS002587 for study accession ERP000983.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002587" refname="M5TwistDX_dscDNA-sc-2010-03-05-9878" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002587</PRIMARY_ID> <SUBMITTER_ID namespace="SC">M5TwistDX_dscDNA-sc-2010-03-05-9878</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>85718</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4132_2" center_name="SC" accession="ERX028779"> <IDENTIFIERS> <PRIMARY_ID>ERX028779</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4132_2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 85719, constructed from sample accession ERS002588 for study accession ERP000983.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002588" refname="M6TwistDX_dscDNA-sc-2010-03-05-9879" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002588</PRIMARY_ID> <SUBMITTER_ID namespace="SC">M6TwistDX_dscDNA-sc-2010-03-05-9879</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>85719</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4132_3" center_name="SC" accession="ERX028780"> <IDENTIFIERS> <PRIMARY_ID>ERX028780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4132_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 85720, constructed from sample accession ERS002589 for study accession ERP000983.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002589" refname="M7TwistDX_dscDNA-sc-2010-03-05-9880" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002589</PRIMARY_ID> <SUBMITTER_ID namespace="SC">M7TwistDX_dscDNA-sc-2010-03-05-9880</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>85720</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_4169_3" center_name="SC" accession="ERX028781"> <IDENTIFIERS> <PRIMARY_ID>ERX028781</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_4169_3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 86382, constructed from sample accession ERS002590 for study accession ERP000983.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS002590" refname="M8TwistDX_dscDNA-sc-2010-03-05-9881" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS002590</PRIMARY_ID> <SUBMITTER_ID namespace="SC">M8TwistDX_dscDNA-sc-2010-03-05-9881</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>86382</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>152</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6678_2#1" center_name="SC" accession="ERX028782"> <IDENTIFIERS> <PRIMARY_ID>ERX028782</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6678_2#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3148190, constructed from sample accession ERS068546 for study accession ERP000983. This is part of an Illumina multiplexed sequencing run (6678_2). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS068546" refname="Pc_2_RNA-sc-2011-11-03T15:51:00Z-1155081" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS068546</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Pc_2_RNA-sc-2011-11-03T15:51:00Z-1155081</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3148190</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6678_2#2" center_name="SC" accession="ERX028783"> <IDENTIFIERS> <PRIMARY_ID>ERX028783</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6678_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000983" refname="RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">RNA_Seq_of_P__chabaudi_AS_erythrocytic_stages_-sc-2011-11-03T15:48:22Z-189</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3148191, constructed from sample accession ERS068545 for study accession ERP000983. This is part of an Illumina multiplexed sequencing run (6678_2). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS068545" refname="Pc_3_RNA-sc-2011-11-03T15:50:25Z-1155082" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS068545</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Pc_3_RNA-sc-2011-11-03T15:50:25Z-1155082</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3148191</LIBRARY_NAME> <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY> <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="250"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina cDNA protocol</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>