ERX029626 SC_EXP_6673_8#1 <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950579, constructed from sample accession ERS019399 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019399" refname="SMRU241-sc-2011-01-27-1060430" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019399</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU241-sc-2011-01-27-1060430</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950579</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#2" center_name="SC" accession="ERX029627"> <IDENTIFIERS> <PRIMARY_ID>ERX029627</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950580, constructed from sample accession ERS019400 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019400" refname="SMRU242-sc-2011-01-27-1060431" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019400</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU242-sc-2011-01-27-1060431</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950580</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#3" center_name="SC" accession="ERX029628"> <IDENTIFIERS> <PRIMARY_ID>ERX029628</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950581, constructed from sample accession ERS019401 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019401" refname="SMRU243-sc-2011-01-27-1060432" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019401</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU243-sc-2011-01-27-1060432</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950581</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#4" center_name="SC" accession="ERX029629"> <IDENTIFIERS> <PRIMARY_ID>ERX029629</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950582, constructed from sample accession ERS019402 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019402" refname="SMRU244-sc-2011-01-27-1060433" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019402</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU244-sc-2011-01-27-1060433</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950582</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#5" center_name="SC" accession="ERX029630"> <IDENTIFIERS> <PRIMARY_ID>ERX029630</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950583, constructed from sample accession ERS019403 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019403" refname="SMRU245-sc-2011-01-27-1060434" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019403</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU245-sc-2011-01-27-1060434</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950583</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#6" center_name="SC" accession="ERX029631"> <IDENTIFIERS> <PRIMARY_ID>ERX029631</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950584, constructed from sample accession ERS019404 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019404" refname="SMRU246-sc-2011-01-27-1060435" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019404</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU246-sc-2011-01-27-1060435</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950584</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#7" center_name="SC" accession="ERX029632"> <IDENTIFIERS> <PRIMARY_ID>ERX029632</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950585, constructed from sample accession ERS019405 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019405" refname="SMRU247-sc-2011-01-27-1060436" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019405</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU247-sc-2011-01-27-1060436</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950585</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#8" center_name="SC" accession="ERX029633"> <IDENTIFIERS> <PRIMARY_ID>ERX029633</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950586, constructed from sample accession ERS019406 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019406" refname="SMRU248-sc-2011-01-27-1060437" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019406</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU248-sc-2011-01-27-1060437</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950586</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#9" center_name="SC" accession="ERX029634"> <IDENTIFIERS> <PRIMARY_ID>ERX029634</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950587, constructed from sample accession ERS019407 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019407" refname="SMRU249-sc-2011-01-27-1060438" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019407</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU249-sc-2011-01-27-1060438</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950587</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#10" center_name="SC" accession="ERX029635"> <IDENTIFIERS> <PRIMARY_ID>ERX029635</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950588, constructed from sample accession ERS019408 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019408" refname="SMRU250-sc-2011-01-27-1060439" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019408</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU250-sc-2011-01-27-1060439</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950588</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#11" center_name="SC" accession="ERX029636"> <IDENTIFIERS> <PRIMARY_ID>ERX029636</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950589, constructed from sample accession ERS019409 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019409" refname="SMRU251-sc-2011-01-27-1060440" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019409</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU251-sc-2011-01-27-1060440</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950589</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#12" center_name="SC" accession="ERX029637"> <IDENTIFIERS> <PRIMARY_ID>ERX029637</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950590, constructed from sample accession ERS019410 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019410" refname="SMRU252-sc-2011-01-27-1060441" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019410</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU252-sc-2011-01-27-1060441</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950590</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#13" center_name="SC" accession="ERX029638"> <IDENTIFIERS> <PRIMARY_ID>ERX029638</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950591, constructed from sample accession ERS019411 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019411" refname="SMRU253-sc-2011-01-27-1060442" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019411</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU253-sc-2011-01-27-1060442</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950591</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#14" center_name="SC" accession="ERX029639"> <IDENTIFIERS> <PRIMARY_ID>ERX029639</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950592, constructed from sample accession ERS019412 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019412" refname="SMRU254-sc-2011-01-27-1060443" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019412</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU254-sc-2011-01-27-1060443</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950592</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#15" center_name="SC" accession="ERX029640"> <IDENTIFIERS> <PRIMARY_ID>ERX029640</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950593, constructed from sample accession ERS019413 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019413" refname="SMRU255-sc-2011-01-27-1060444" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019413</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU255-sc-2011-01-27-1060444</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950593</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#16" center_name="SC" accession="ERX029641"> <IDENTIFIERS> <PRIMARY_ID>ERX029641</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950594, constructed from sample accession ERS019414 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019414" refname="SMRU256-sc-2011-01-27-1060445" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019414</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU256-sc-2011-01-27-1060445</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950594</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#17" center_name="SC" accession="ERX029642"> <IDENTIFIERS> <PRIMARY_ID>ERX029642</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950595, constructed from sample accession ERS019415 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019415" refname="SMRU257-sc-2011-01-27-1060446" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019415</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU257-sc-2011-01-27-1060446</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950595</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#18" center_name="SC" accession="ERX029643"> <IDENTIFIERS> <PRIMARY_ID>ERX029643</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950596, constructed from sample accession ERS019416 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019416" refname="SMRU258-sc-2011-01-27-1060447" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019416</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU258-sc-2011-01-27-1060447</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950596</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#19" center_name="SC" accession="ERX029644"> <IDENTIFIERS> <PRIMARY_ID>ERX029644</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950597, constructed from sample accession ERS019417 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019417" refname="SMRU259-sc-2011-01-27-1060448" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019417</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU259-sc-2011-01-27-1060448</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950597</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#20" center_name="SC" accession="ERX029645"> <IDENTIFIERS> <PRIMARY_ID>ERX029645</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950598, constructed from sample accession ERS019418 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019418" refname="SMRU260-sc-2011-01-27-1060449" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019418</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU260-sc-2011-01-27-1060449</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950598</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#21" center_name="SC" accession="ERX029646"> <IDENTIFIERS> <PRIMARY_ID>ERX029646</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950599, constructed from sample accession ERS019419 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019419" refname="SMRU261-sc-2011-01-27-1060450" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019419</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU261-sc-2011-01-27-1060450</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950599</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#22" center_name="SC" accession="ERX029647"> <IDENTIFIERS> <PRIMARY_ID>ERX029647</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950600, constructed from sample accession ERS019420 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019420" refname="SMRU262-sc-2011-01-27-1060451" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019420</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU262-sc-2011-01-27-1060451</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950600</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#23" center_name="SC" accession="ERX029648"> <IDENTIFIERS> <PRIMARY_ID>ERX029648</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950601, constructed from sample accession ERS019421 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019421" refname="SMRU263-sc-2011-01-27-1060452" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019421</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU263-sc-2011-01-27-1060452</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950601</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6673_8#24" center_name="SC" accession="ERX029649"> <IDENTIFIERS> <PRIMARY_ID>ERX029649</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6673_8#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 2950602, constructed from sample accession ERS019422 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6673_8). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019422" refname="SMRU264-sc-2011-01-27-1060453" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019422</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU264-sc-2011-01-27-1060453</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>2950602</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="221" NOMINAL_SDEV="85"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#1" center_name="SC" accession="ERX029650"> <IDENTIFIERS> <PRIMARY_ID>ERX029650</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152254, constructed from sample accession ERS020255 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020255" refname="SMRU745-sc-2011-01-27-1060934" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020255</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU745-sc-2011-01-27-1060934</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152254</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#2" center_name="SC" accession="ERX029651"> <IDENTIFIERS> <PRIMARY_ID>ERX029651</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152255, constructed from sample accession ERS020256 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020256" refname="SMRU746-sc-2011-01-27-1060935" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020256</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU746-sc-2011-01-27-1060935</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152255</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#3" center_name="SC" accession="ERX029652"> <IDENTIFIERS> <PRIMARY_ID>ERX029652</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152256, constructed from sample accession ERS020257 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020257" refname="SMRU747-sc-2011-01-27-1060936" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020257</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU747-sc-2011-01-27-1060936</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152256</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#4" center_name="SC" accession="ERX029653"> <IDENTIFIERS> <PRIMARY_ID>ERX029653</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152257, constructed from sample accession ERS020258 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020258" refname="SMRU748-sc-2011-01-27-1060937" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020258</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU748-sc-2011-01-27-1060937</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152257</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#5" center_name="SC" accession="ERX029654"> <IDENTIFIERS> <PRIMARY_ID>ERX029654</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152258, constructed from sample accession ERS020259 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020259" refname="SMRU749-sc-2011-01-27-1060938" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020259</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU749-sc-2011-01-27-1060938</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152258</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#6" center_name="SC" accession="ERX029655"> <IDENTIFIERS> <PRIMARY_ID>ERX029655</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152259, constructed from sample accession ERS020260 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020260" refname="SMRU750-sc-2011-01-27-1060939" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020260</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU750-sc-2011-01-27-1060939</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152259</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#7" center_name="SC" accession="ERX029656"> <IDENTIFIERS> <PRIMARY_ID>ERX029656</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152260, constructed from sample accession ERS020261 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020261" refname="SMRU751-sc-2011-01-27-1060940" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020261</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU751-sc-2011-01-27-1060940</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152260</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#8" center_name="SC" accession="ERX029657"> <IDENTIFIERS> <PRIMARY_ID>ERX029657</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152261, constructed from sample accession ERS020262 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020262" refname="SMRU752-sc-2011-01-27-1060941" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020262</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU752-sc-2011-01-27-1060941</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152261</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#9" center_name="SC" accession="ERX029658"> <IDENTIFIERS> <PRIMARY_ID>ERX029658</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152262, constructed from sample accession ERS020263 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020263" refname="SMRU753-sc-2011-01-27-1060942" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020263</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU753-sc-2011-01-27-1060942</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152262</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#10" center_name="SC" accession="ERX029659"> <IDENTIFIERS> <PRIMARY_ID>ERX029659</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152263, constructed from sample accession ERS020264 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020264" refname="SMRU754-sc-2011-01-27-1060943" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020264</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU754-sc-2011-01-27-1060943</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152263</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#11" center_name="SC" accession="ERX029660"> <IDENTIFIERS> <PRIMARY_ID>ERX029660</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152264, constructed from sample accession ERS020265 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020265" refname="SMRU755-sc-2011-01-27-1060944" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020265</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU755-sc-2011-01-27-1060944</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152264</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#12" center_name="SC" accession="ERX029661"> <IDENTIFIERS> <PRIMARY_ID>ERX029661</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152265, constructed from sample accession ERS020266 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020266" refname="SMRU756-sc-2011-01-27-1060945" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020266</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU756-sc-2011-01-27-1060945</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152265</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#13" center_name="SC" accession="ERX029662"> <IDENTIFIERS> <PRIMARY_ID>ERX029662</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152266, constructed from sample accession ERS020267 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020267" refname="SMRU757-sc-2011-01-27-1060946" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020267</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU757-sc-2011-01-27-1060946</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152266</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#14" center_name="SC" accession="ERX029663"> <IDENTIFIERS> <PRIMARY_ID>ERX029663</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152267, constructed from sample accession ERS020268 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020268" refname="SMRU758-sc-2011-01-27-1060947" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020268</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU758-sc-2011-01-27-1060947</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152267</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#15" center_name="SC" accession="ERX029664"> <IDENTIFIERS> <PRIMARY_ID>ERX029664</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152268, constructed from sample accession ERS020269 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020269" refname="SMRU759-sc-2011-01-27-1060948" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020269</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU759-sc-2011-01-27-1060948</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152268</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#16" center_name="SC" accession="ERX029665"> <IDENTIFIERS> <PRIMARY_ID>ERX029665</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152269, constructed from sample accession ERS020270 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020270" refname="SMRU760-sc-2011-01-27-1060949" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020270</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU760-sc-2011-01-27-1060949</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152269</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#17" center_name="SC" accession="ERX029666"> <IDENTIFIERS> <PRIMARY_ID>ERX029666</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152270, constructed from sample accession ERS020271 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020271" refname="SMRU761-sc-2011-01-27-1060950" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020271</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU761-sc-2011-01-27-1060950</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152270</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#18" center_name="SC" accession="ERX029667"> <IDENTIFIERS> <PRIMARY_ID>ERX029667</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152271, constructed from sample accession ERS020272 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020272" refname="SMRU762-sc-2011-01-27-1060951" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020272</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU762-sc-2011-01-27-1060951</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152271</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#19" center_name="SC" accession="ERX029668"> <IDENTIFIERS> <PRIMARY_ID>ERX029668</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152272, constructed from sample accession ERS020273 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020273" refname="SMRU763-sc-2011-01-27-1060952" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020273</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU763-sc-2011-01-27-1060952</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152272</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#20" center_name="SC" accession="ERX029669"> <IDENTIFIERS> <PRIMARY_ID>ERX029669</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152273, constructed from sample accession ERS020274 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020274" refname="SMRU764-sc-2011-01-27-1060953" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020274</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU764-sc-2011-01-27-1060953</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152273</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#21" center_name="SC" accession="ERX029670"> <IDENTIFIERS> <PRIMARY_ID>ERX029670</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152274, constructed from sample accession ERS020275 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020275" refname="SMRU765-sc-2011-01-27-1060954" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020275</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU765-sc-2011-01-27-1060954</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152274</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#22" center_name="SC" accession="ERX029671"> <IDENTIFIERS> <PRIMARY_ID>ERX029671</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152275, constructed from sample accession ERS020276 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020276" refname="SMRU766-sc-2011-01-27-1060955" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020276</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU766-sc-2011-01-27-1060955</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152275</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#23" center_name="SC" accession="ERX029672"> <IDENTIFIERS> <PRIMARY_ID>ERX029672</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152276, constructed from sample accession ERS020277 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020277" refname="SMRU767-sc-2011-01-27-1060956" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020277</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU767-sc-2011-01-27-1060956</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152276</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_7#24" center_name="SC" accession="ERX029673"> <IDENTIFIERS> <PRIMARY_ID>ERX029673</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_7#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3152277, constructed from sample accession ERS020278 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6714_7). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020278" refname="SMRU768-sc-2011-01-27-1060957" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020278</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU768-sc-2011-01-27-1060957</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3152277</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="225" NOMINAL_SDEV="76"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#1" center_name="SC" accession="ERX029674"> <IDENTIFIERS> <PRIMARY_ID>ERX029674</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100031, constructed from sample accession ERS019711 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019711" refname="SMRU553-sc-2011-01-27-1060742" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019711</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU553-sc-2011-01-27-1060742</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100031</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#2" center_name="SC" accession="ERX029675"> <IDENTIFIERS> <PRIMARY_ID>ERX029675</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100032, constructed from sample accession ERS019712 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019712" refname="SMRU554-sc-2011-01-27-1060743" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019712</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU554-sc-2011-01-27-1060743</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100032</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#3" center_name="SC" accession="ERX029676"> <IDENTIFIERS> <PRIMARY_ID>ERX029676</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100033, constructed from sample accession ERS019713 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019713" refname="SMRU555-sc-2011-01-27-1060744" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019713</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU555-sc-2011-01-27-1060744</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100033</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#4" center_name="SC" accession="ERX029677"> <IDENTIFIERS> <PRIMARY_ID>ERX029677</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100034, constructed from sample accession ERS019714 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019714" refname="SMRU556-sc-2011-01-27-1060745" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019714</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU556-sc-2011-01-27-1060745</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100034</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#5" center_name="SC" accession="ERX029678"> <IDENTIFIERS> <PRIMARY_ID>ERX029678</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100035, constructed from sample accession ERS019715 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019715" refname="SMRU557-sc-2011-01-27-1060746" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019715</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU557-sc-2011-01-27-1060746</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100035</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#6" center_name="SC" accession="ERX029679"> <IDENTIFIERS> <PRIMARY_ID>ERX029679</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100036, constructed from sample accession ERS019716 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019716" refname="SMRU558-sc-2011-01-27-1060747" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019716</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU558-sc-2011-01-27-1060747</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100036</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#7" center_name="SC" accession="ERX029680"> <IDENTIFIERS> <PRIMARY_ID>ERX029680</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100037, constructed from sample accession ERS019717 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019717" refname="SMRU559-sc-2011-01-27-1060748" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019717</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU559-sc-2011-01-27-1060748</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100037</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#8" center_name="SC" accession="ERX029681"> <IDENTIFIERS> <PRIMARY_ID>ERX029681</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100038, constructed from sample accession ERS019718 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019718" refname="SMRU560-sc-2011-01-27-1060749" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019718</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU560-sc-2011-01-27-1060749</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100038</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#9" center_name="SC" accession="ERX029682"> <IDENTIFIERS> <PRIMARY_ID>ERX029682</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100039, constructed from sample accession ERS019719 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019719" refname="SMRU561-sc-2011-01-27-1060750" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019719</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU561-sc-2011-01-27-1060750</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100039</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#10" center_name="SC" accession="ERX029683"> <IDENTIFIERS> <PRIMARY_ID>ERX029683</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100040, constructed from sample accession ERS019720 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019720" refname="SMRU562-sc-2011-01-27-1060751" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019720</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU562-sc-2011-01-27-1060751</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100040</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#11" center_name="SC" accession="ERX029684"> <IDENTIFIERS> <PRIMARY_ID>ERX029684</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100041, constructed from sample accession ERS019721 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019721" refname="SMRU563-sc-2011-01-27-1060752" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019721</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU563-sc-2011-01-27-1060752</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100041</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#12" center_name="SC" accession="ERX029685"> <IDENTIFIERS> <PRIMARY_ID>ERX029685</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100042, constructed from sample accession ERS019722 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019722" refname="SMRU564-sc-2011-01-27-1060753" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019722</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU564-sc-2011-01-27-1060753</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100042</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#13" center_name="SC" accession="ERX029686"> <IDENTIFIERS> <PRIMARY_ID>ERX029686</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100043, constructed from sample accession ERS019723 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019723" refname="SMRU565-sc-2011-01-27-1060754" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019723</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU565-sc-2011-01-27-1060754</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100043</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#14" center_name="SC" accession="ERX029687"> <IDENTIFIERS> <PRIMARY_ID>ERX029687</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100044, constructed from sample accession ERS019724 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019724" refname="SMRU566-sc-2011-01-27-1060755" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019724</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU566-sc-2011-01-27-1060755</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100044</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#15" center_name="SC" accession="ERX029688"> <IDENTIFIERS> <PRIMARY_ID>ERX029688</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100045, constructed from sample accession ERS019725 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019725" refname="SMRU567-sc-2011-01-27-1060756" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019725</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU567-sc-2011-01-27-1060756</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100045</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#16" center_name="SC" accession="ERX029689"> <IDENTIFIERS> <PRIMARY_ID>ERX029689</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100046, constructed from sample accession ERS019726 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019726" refname="SMRU568-sc-2011-01-27-1060757" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019726</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU568-sc-2011-01-27-1060757</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100046</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#17" center_name="SC" accession="ERX029690"> <IDENTIFIERS> <PRIMARY_ID>ERX029690</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100047, constructed from sample accession ERS019727 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019727" refname="SMRU569-sc-2011-01-27-1060758" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019727</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU569-sc-2011-01-27-1060758</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100047</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#18" center_name="SC" accession="ERX029691"> <IDENTIFIERS> <PRIMARY_ID>ERX029691</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100048, constructed from sample accession ERS019728 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019728" refname="SMRU570-sc-2011-01-27-1060759" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019728</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU570-sc-2011-01-27-1060759</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100048</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#19" center_name="SC" accession="ERX029692"> <IDENTIFIERS> <PRIMARY_ID>ERX029692</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100049, constructed from sample accession ERS019729 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019729" refname="SMRU571-sc-2011-01-27-1060760" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019729</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU571-sc-2011-01-27-1060760</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100049</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#20" center_name="SC" accession="ERX029693"> <IDENTIFIERS> <PRIMARY_ID>ERX029693</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100050, constructed from sample accession ERS019730 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019730" refname="SMRU572-sc-2011-01-27-1060761" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019730</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU572-sc-2011-01-27-1060761</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100050</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#21" center_name="SC" accession="ERX029694"> <IDENTIFIERS> <PRIMARY_ID>ERX029694</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100051, constructed from sample accession ERS019731 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019731" refname="SMRU573-sc-2011-01-27-1060762" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019731</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU573-sc-2011-01-27-1060762</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100051</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#22" center_name="SC" accession="ERX029695"> <IDENTIFIERS> <PRIMARY_ID>ERX029695</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100052, constructed from sample accession ERS019732 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019732" refname="SMRU574-sc-2011-01-27-1060763" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019732</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU574-sc-2011-01-27-1060763</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100052</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#23" center_name="SC" accession="ERX029696"> <IDENTIFIERS> <PRIMARY_ID>ERX029696</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100053, constructed from sample accession ERS019733 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019733" refname="SMRU575-sc-2011-01-27-1060764" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU575-sc-2011-01-27-1060764</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100053</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6714_8#24" center_name="SC" accession="ERX029697"> <IDENTIFIERS> <PRIMARY_ID>ERX029697</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6714_8#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000435" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000435</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100054, constructed from sample accession ERS019734 for study accession ERP000435. This is part of an Illumina multiplexed sequencing run (6714_8). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS019734" refname="SMRU576-sc-2011-01-27-1060765" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS019734</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU576-sc-2011-01-27-1060765</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100054</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="246" NOMINAL_SDEV="73"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6730_1#1" center_name="SC" accession="ERX029698"> <IDENTIFIERS> <PRIMARY_ID>ERX029698</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6730_1#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000483" refname="Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3100055, constructed from sample accession ERS020087 for study accession ERP000483. This is part of an Illumina multiplexed sequencing run (6730_1). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS020087" refname="SMRU577-sc-2011-01-27-1060766" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS020087</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SMRU577-sc-2011-01-27-1060766</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3100055</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="236" NOMINAL_SDEV="72"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>