<STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066380, constructed from sample accession ERS038951 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038951" refname="Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#2" center_name="SC" accession="ERX029930"> <IDENTIFIERS> <PRIMARY_ID>ERX029930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066381, constructed from sample accession ERS038952 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038952" refname="Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066381</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#3" center_name="SC" accession="ERX029931"> <IDENTIFIERS> <PRIMARY_ID>ERX029931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066382, constructed from sample accession ERS038953 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038953" refname="Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066382</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#4" center_name="SC" accession="ERX029932"> <IDENTIFIERS> <PRIMARY_ID>ERX029932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066383, constructed from sample accession ERS038954 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038954" refname="Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066383</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#5" center_name="SC" accession="ERX029933"> <IDENTIFIERS> <PRIMARY_ID>ERX029933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066384, constructed from sample accession ERS038955 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038955" refname="Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#6" center_name="SC" accession="ERX029934"> <IDENTIFIERS> <PRIMARY_ID>ERX029934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066385, constructed from sample accession ERS038956 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038956" refname="Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#7" center_name="SC" accession="ERX029935"> <IDENTIFIERS> <PRIMARY_ID>ERX029935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066386, constructed from sample accession ERS038957 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038957" refname="Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#8" center_name="SC" accession="ERX029936"> <IDENTIFIERS> <PRIMARY_ID>ERX029936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066387, constructed from sample accession ERS038958 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038958" refname="Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#9" center_name="SC" accession="ERX029937"> <IDENTIFIERS> <PRIMARY_ID>ERX029937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066388, constructed from sample accession ERS038959 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038959" refname="Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#10" center_name="SC" accession="ERX029938"> <IDENTIFIERS> <PRIMARY_ID>ERX029938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066389, constructed from sample accession ERS038960 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038960" refname="Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#11" center_name="SC" accession="ERX029939"> <IDENTIFIERS> <PRIMARY_ID>ERX029939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066390, constructed from sample accession ERS038961 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038961" refname="Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#12" center_name="SC" accession="ERX029940"> <IDENTIFIERS> <PRIMARY_ID>ERX029940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066391, constructed from sample accession ERS038962 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038962" refname="Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#13" center_name="SC" accession="ERX029941"> <IDENTIFIERS> <PRIMARY_ID>ERX029941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066392, constructed from sample accession ERS038963 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038963" refname="Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#14" center_name="SC" accession="ERX029942"> <IDENTIFIERS> <PRIMARY_ID>ERX029942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066393, constructed from sample accession ERS038964 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038964" refname="Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#15" center_name="SC" accession="ERX029943"> <IDENTIFIERS> <PRIMARY_ID>ERX029943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066394, constructed from sample accession ERS038965 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038965" refname="Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#16" center_name="SC" accession="ERX029944"> <IDENTIFIERS> <PRIMARY_ID>ERX029944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066395, constructed from sample accession ERS038966 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038966" refname="Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#17" center_name="SC" accession="ERX029945"> <IDENTIFIERS> <PRIMARY_ID>ERX029945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066396, constructed from sample accession ERS038967 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038967" refname="Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#18" center_name="SC" accession="ERX029946"> <IDENTIFIERS> <PRIMARY_ID>ERX029946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066397, constructed from sample accession ERS038968 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038968" refname="Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#19" center_name="SC" accession="ERX029947"> <IDENTIFIERS> <PRIMARY_ID>ERX029947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066398, constructed from sample accession ERS038969 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038969" refname="Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#20" center_name="SC" accession="ERX029948"> <IDENTIFIERS> <PRIMARY_ID>ERX029948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066399, constructed from sample accession ERS038970 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038970" refname="Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#21" center_name="SC" accession="ERX029949"> <IDENTIFIERS> <PRIMARY_ID>ERX029949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066400, constructed from sample accession ERS038971 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038971" refname="Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#22" center_name="SC" accession="ERX029950"> <IDENTIFIERS> <PRIMARY_ID>ERX029950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066401, constructed from sample accession ERS038972 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038972" refname="Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#23" center_name="SC" accession="ERX029951"> <IDENTIFIERS> <PRIMARY_ID>ERX029951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066402, constructed from sample accession ERS038973 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038973" refname="Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#24" center_name="SC" accession="ERX029952"> <IDENTIFIERS> <PRIMARY_ID>ERX029952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066403, constructed from sample accession ERS038974 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038974" refname="Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#1" center_name="SC" accession="ERX029953"> <IDENTIFIERS> <PRIMARY_ID>ERX029953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066380, constructed from sample accession ERS038951 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038951" refname="Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#2" center_name="SC" accession="ERX029954"> <IDENTIFIERS> <PRIMARY_ID>ERX029954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066381, constructed from sample accession ERS038952 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038952" refname="Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066381</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#3" center_name="SC" accession="ERX029955"> <IDENTIFIERS> <PRIMARY_ID>ERX029955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066382, constructed from sample accession ERS038953 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038953" refname="Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066382</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#4" center_name="SC" accession="ERX029956"> <IDENTIFIERS> <PRIMARY_ID>ERX029956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066383, constructed from sample accession ERS038954 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038954" refname="Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066383</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#5" center_name="SC" accession="ERX029957"> <IDENTIFIERS> <PRIMARY_ID>ERX029957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066384, constructed from sample accession ERS038955 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038955" refname="Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#6" center_name="SC" accession="ERX029958"> <IDENTIFIERS> <PRIMARY_ID>ERX029958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066385, constructed from sample accession ERS038956 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038956" refname="Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#7" center_name="SC" accession="ERX029959"> <IDENTIFIERS> <PRIMARY_ID>ERX029959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066386, constructed from sample accession ERS038957 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038957" refname="Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#8" center_name="SC" accession="ERX029960"> <IDENTIFIERS> <PRIMARY_ID>ERX029960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066387, constructed from sample accession ERS038958 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038958" refname="Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#9" center_name="SC" accession="ERX029961"> <IDENTIFIERS> <PRIMARY_ID>ERX029961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066388, constructed from sample accession ERS038959 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038959" refname="Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#10" center_name="SC" accession="ERX029962"> <IDENTIFIERS> <PRIMARY_ID>ERX029962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066389, constructed from sample accession ERS038960 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038960" refname="Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#11" center_name="SC" accession="ERX029963"> <IDENTIFIERS> <PRIMARY_ID>ERX029963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066390, constructed from sample accession ERS038961 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038961" refname="Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#12" center_name="SC" accession="ERX029964"> <IDENTIFIERS> <PRIMARY_ID>ERX029964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066391, constructed from sample accession ERS038962 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038962" refname="Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#13" center_name="SC" accession="ERX029965"> <IDENTIFIERS> <PRIMARY_ID>ERX029965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066392, constructed from sample accession ERS038963 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038963" refname="Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#14" center_name="SC" accession="ERX029966"> <IDENTIFIERS> <PRIMARY_ID>ERX029966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066393, constructed from sample accession ERS038964 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038964" refname="Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#15" center_name="SC" accession="ERX029967"> <IDENTIFIERS> <PRIMARY_ID>ERX029967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066394, constructed from sample accession ERS038965 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038965" refname="Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#16" center_name="SC" accession="ERX029968"> <IDENTIFIERS> <PRIMARY_ID>ERX029968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066395, constructed from sample accession ERS038966 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038966" refname="Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#17" center_name="SC" accession="ERX029969"> <IDENTIFIERS> <PRIMARY_ID>ERX029969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066396, constructed from sample accession ERS038967 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038967" refname="Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#18" center_name="SC" accession="ERX029970"> <IDENTIFIERS> <PRIMARY_ID>ERX029970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066397, constructed from sample accession ERS038968 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038968" refname="Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#19" center_name="SC" accession="ERX029971"> <IDENTIFIERS> <PRIMARY_ID>ERX029971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066398, constructed from sample accession ERS038969 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038969" refname="Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#20" center_name="SC" accession="ERX029972"> <IDENTIFIERS> <PRIMARY_ID>ERX029972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066399, constructed from sample accession ERS038970 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038970" refname="Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#21" center_name="SC" accession="ERX029973"> <IDENTIFIERS> <PRIMARY_ID>ERX029973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066400, constructed from sample accession ERS038971 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038971" refname="Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#22" center_name="SC" accession="ERX029974"> <IDENTIFIERS> <PRIMARY_ID>ERX029974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066401, constructed from sample accession ERS038972 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038972" refname="Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#23" center_name="SC" accession="ERX029975"> <IDENTIFIERS> <PRIMARY_ID>ERX029975</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066402, constructed from sample accession ERS038973 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038973" refname="Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#24" center_name="SC" accession="ERX029976"> <IDENTIFIERS> <PRIMARY_ID>ERX029976</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066403, constructed from sample accession ERS038974 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038974" refname="Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT

ERX029929 SC_EXP_6711_2#1 <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066380, constructed from sample accession ERS038951 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038951" refname="Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#2" center_name="SC" accession="ERX029930"> <IDENTIFIERS> <PRIMARY_ID>ERX029930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066381, constructed from sample accession ERS038952 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038952" refname="Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066381</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#3" center_name="SC" accession="ERX029931"> <IDENTIFIERS> <PRIMARY_ID>ERX029931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066382, constructed from sample accession ERS038953 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038953" refname="Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066382</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#4" center_name="SC" accession="ERX029932"> <IDENTIFIERS> <PRIMARY_ID>ERX029932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066383, constructed from sample accession ERS038954 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038954" refname="Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066383</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#5" center_name="SC" accession="ERX029933"> <IDENTIFIERS> <PRIMARY_ID>ERX029933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066384, constructed from sample accession ERS038955 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038955" refname="Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#6" center_name="SC" accession="ERX029934"> <IDENTIFIERS> <PRIMARY_ID>ERX029934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066385, constructed from sample accession ERS038956 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038956" refname="Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#7" center_name="SC" accession="ERX029935"> <IDENTIFIERS> <PRIMARY_ID>ERX029935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066386, constructed from sample accession ERS038957 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038957" refname="Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#8" center_name="SC" accession="ERX029936"> <IDENTIFIERS> <PRIMARY_ID>ERX029936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066387, constructed from sample accession ERS038958 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038958" refname="Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#9" center_name="SC" accession="ERX029937"> <IDENTIFIERS> <PRIMARY_ID>ERX029937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066388, constructed from sample accession ERS038959 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038959" refname="Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#10" center_name="SC" accession="ERX029938"> <IDENTIFIERS> <PRIMARY_ID>ERX029938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066389, constructed from sample accession ERS038960 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038960" refname="Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#11" center_name="SC" accession="ERX029939"> <IDENTIFIERS> <PRIMARY_ID>ERX029939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066390, constructed from sample accession ERS038961 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038961" refname="Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#12" center_name="SC" accession="ERX029940"> <IDENTIFIERS> <PRIMARY_ID>ERX029940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066391, constructed from sample accession ERS038962 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038962" refname="Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#13" center_name="SC" accession="ERX029941"> <IDENTIFIERS> <PRIMARY_ID>ERX029941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066392, constructed from sample accession ERS038963 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038963" refname="Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#14" center_name="SC" accession="ERX029942"> <IDENTIFIERS> <PRIMARY_ID>ERX029942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066393, constructed from sample accession ERS038964 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038964" refname="Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#15" center_name="SC" accession="ERX029943"> <IDENTIFIERS> <PRIMARY_ID>ERX029943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066394, constructed from sample accession ERS038965 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038965" refname="Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#16" center_name="SC" accession="ERX029944"> <IDENTIFIERS> <PRIMARY_ID>ERX029944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066395, constructed from sample accession ERS038966 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038966" refname="Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#17" center_name="SC" accession="ERX029945"> <IDENTIFIERS> <PRIMARY_ID>ERX029945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066396, constructed from sample accession ERS038967 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038967" refname="Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#18" center_name="SC" accession="ERX029946"> <IDENTIFIERS> <PRIMARY_ID>ERX029946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066397, constructed from sample accession ERS038968 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038968" refname="Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#19" center_name="SC" accession="ERX029947"> <IDENTIFIERS> <PRIMARY_ID>ERX029947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066398, constructed from sample accession ERS038969 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038969" refname="Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#20" center_name="SC" accession="ERX029948"> <IDENTIFIERS> <PRIMARY_ID>ERX029948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066399, constructed from sample accession ERS038970 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038970" refname="Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#21" center_name="SC" accession="ERX029949"> <IDENTIFIERS> <PRIMARY_ID>ERX029949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066400, constructed from sample accession ERS038971 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038971" refname="Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#22" center_name="SC" accession="ERX029950"> <IDENTIFIERS> <PRIMARY_ID>ERX029950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066401, constructed from sample accession ERS038972 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038972" refname="Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#23" center_name="SC" accession="ERX029951"> <IDENTIFIERS> <PRIMARY_ID>ERX029951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066402, constructed from sample accession ERS038973 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038973" refname="Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6711_2#24" center_name="SC" accession="ERX029952"> <IDENTIFIERS> <PRIMARY_ID>ERX029952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6711_2#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066403, constructed from sample accession ERS038974 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6711_2). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038974" refname="Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="217" NOMINAL_SDEV="59"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#1" center_name="SC" accession="ERX029953"> <IDENTIFIERS> <PRIMARY_ID>ERX029953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066380, constructed from sample accession ERS038951 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038951" refname="Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_925-sc-2011-06-17T10:53:36Z-1166015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066380</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#2" center_name="SC" accession="ERX029954"> <IDENTIFIERS> <PRIMARY_ID>ERX029954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066381, constructed from sample accession ERS038952 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038952" refname="Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_927-sc-2011-06-17T10:53:37Z-1166016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066381</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#3" center_name="SC" accession="ERX029955"> <IDENTIFIERS> <PRIMARY_ID>ERX029955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066382, constructed from sample accession ERS038953 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038953" refname="Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_938-sc-2011-06-17T10:53:37Z-1166017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066382</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#4" center_name="SC" accession="ERX029956"> <IDENTIFIERS> <PRIMARY_ID>ERX029956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066383, constructed from sample accession ERS038954 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038954" refname="Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_940-sc-2011-06-17T10:53:38Z-1166018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066383</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#5" center_name="SC" accession="ERX029957"> <IDENTIFIERS> <PRIMARY_ID>ERX029957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066384, constructed from sample accession ERS038955 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038955" refname="Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_953-sc-2011-06-17T10:53:38Z-1166019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066384</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#6" center_name="SC" accession="ERX029958"> <IDENTIFIERS> <PRIMARY_ID>ERX029958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066385, constructed from sample accession ERS038956 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038956" refname="Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_986-sc-2011-06-17T10:53:39Z-1166020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066385</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#7" center_name="SC" accession="ERX029959"> <IDENTIFIERS> <PRIMARY_ID>ERX029959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066386, constructed from sample accession ERS038957 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038957" refname="Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1034-sc-2011-06-17T10:53:40Z-1166021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066386</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#8" center_name="SC" accession="ERX029960"> <IDENTIFIERS> <PRIMARY_ID>ERX029960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066387, constructed from sample accession ERS038958 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038958" refname="Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1074-sc-2011-06-17T10:53:41Z-1166022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066387</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#9" center_name="SC" accession="ERX029961"> <IDENTIFIERS> <PRIMARY_ID>ERX029961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066388, constructed from sample accession ERS038959 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038959" refname="Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1085-sc-2011-06-17T10:53:41Z-1166023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066388</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#10" center_name="SC" accession="ERX029962"> <IDENTIFIERS> <PRIMARY_ID>ERX029962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066389, constructed from sample accession ERS038960 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038960" refname="Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1091-sc-2011-06-17T10:53:42Z-1166024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066389</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#11" center_name="SC" accession="ERX029963"> <IDENTIFIERS> <PRIMARY_ID>ERX029963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066390, constructed from sample accession ERS038961 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038961" refname="Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1111-sc-2011-06-17T10:53:42Z-1166025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066390</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#12" center_name="SC" accession="ERX029964"> <IDENTIFIERS> <PRIMARY_ID>ERX029964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066391, constructed from sample accession ERS038962 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038962" refname="Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1189-sc-2011-06-17T10:53:43Z-1166026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066391</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#13" center_name="SC" accession="ERX029965"> <IDENTIFIERS> <PRIMARY_ID>ERX029965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066392, constructed from sample accession ERS038963 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038963" refname="Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1245-sc-2011-06-17T10:53:43Z-1166027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066392</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#14" center_name="SC" accession="ERX029966"> <IDENTIFIERS> <PRIMARY_ID>ERX029966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066393, constructed from sample accession ERS038964 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038964" refname="Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1287-sc-2011-06-17T10:53:44Z-1166028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066393</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#15" center_name="SC" accession="ERX029967"> <IDENTIFIERS> <PRIMARY_ID>ERX029967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066394, constructed from sample accession ERS038965 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038965" refname="Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1298-sc-2011-06-17T10:53:45Z-1166029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066394</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#16" center_name="SC" accession="ERX029968"> <IDENTIFIERS> <PRIMARY_ID>ERX029968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066395, constructed from sample accession ERS038966 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038966" refname="Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1373-sc-2011-06-17T10:53:46Z-1166030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066395</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#17" center_name="SC" accession="ERX029969"> <IDENTIFIERS> <PRIMARY_ID>ERX029969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066396, constructed from sample accession ERS038967 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038967" refname="Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1392-sc-2011-06-17T10:53:46Z-1166031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066396</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#18" center_name="SC" accession="ERX029970"> <IDENTIFIERS> <PRIMARY_ID>ERX029970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066397, constructed from sample accession ERS038968 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038968" refname="Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1541-sc-2011-06-17T10:53:47Z-1166032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066397</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#19" center_name="SC" accession="ERX029971"> <IDENTIFIERS> <PRIMARY_ID>ERX029971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066398, constructed from sample accession ERS038969 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038969" refname="Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1548-sc-2011-06-17T10:53:47Z-1166033</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066398</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#20" center_name="SC" accession="ERX029972"> <IDENTIFIERS> <PRIMARY_ID>ERX029972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066399, constructed from sample accession ERS038970 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038970" refname="Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1624-sc-2011-06-17T10:53:48Z-1166034</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066399</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#21" center_name="SC" accession="ERX029973"> <IDENTIFIERS> <PRIMARY_ID>ERX029973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066400, constructed from sample accession ERS038971 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038971" refname="Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1646-sc-2011-06-17T10:53:48Z-1166035</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066400</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#22" center_name="SC" accession="ERX029974"> <IDENTIFIERS> <PRIMARY_ID>ERX029974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066401, constructed from sample accession ERS038972 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038972" refname="Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1716-sc-2011-06-17T10:53:49Z-1166036</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066401</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#23" center_name="SC" accession="ERX029975"> <IDENTIFIERS> <PRIMARY_ID>ERX029975</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066402, constructed from sample accession ERS038973 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038973" refname="Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1779-sc-2011-06-17T10:53:50Z-1166037</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066402</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6732_2#24" center_name="SC" accession="ERX029976"> <IDENTIFIERS> <PRIMARY_ID>ERX029976</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6732_2#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000733" refname="Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000733</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Global_phylogeny_of_enterotoxigenic_Escherichia_coli_collection-sc-2011-06-17T09:46:09Z-1867</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3066403, constructed from sample accession ERS038974 for study accession ERP000733. This is part of an Illumina multiplexed sequencing run (6732_2). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS038974" refname="Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS038974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Escherichia_coli_E_1784-sc-2011-06-17T10:53:51Z-1166038</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3066403</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="65"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>158</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>