ERX031790 SC_EXP_6738_5#1 <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341717, constructed from sample accession ERS041750 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041750" refname="Ura3_1-sc-2011-07-14T16:06:17Z-1232615" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041750</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_1-sc-2011-07-14T16:06:17Z-1232615</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341717</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#2" center_name="SC" accession="ERX031791"> <IDENTIFIERS> <PRIMARY_ID>ERX031791</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341718, constructed from sample accession ERS041751 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041751" refname="Ura3_2-sc-2011-07-14T16:06:18Z-1232616" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041751</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_2-sc-2011-07-14T16:06:18Z-1232616</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341718</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#3" center_name="SC" accession="ERX031792"> <IDENTIFIERS> <PRIMARY_ID>ERX031792</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341719, constructed from sample accession ERS041752 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041752" refname="Ura3_3-sc-2011-07-14T16:06:20Z-1232617" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041752</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_3-sc-2011-07-14T16:06:20Z-1232617</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341719</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#4" center_name="SC" accession="ERX031793"> <IDENTIFIERS> <PRIMARY_ID>ERX031793</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341720, constructed from sample accession ERS041753 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041753" refname="Ura3_4-sc-2011-07-14T16:06:21Z-1232618" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041753</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_4-sc-2011-07-14T16:06:21Z-1232618</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341720</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#5" center_name="SC" accession="ERX031794"> <IDENTIFIERS> <PRIMARY_ID>ERX031794</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341721, constructed from sample accession ERS041754 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041754" refname="Ura3_5-sc-2011-07-14T16:06:22Z-1232619" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041754</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_5-sc-2011-07-14T16:06:22Z-1232619</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341721</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#6" center_name="SC" accession="ERX031795"> <IDENTIFIERS> <PRIMARY_ID>ERX031795</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341722, constructed from sample accession ERS041755 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041755" refname="Ura3_6-sc-2011-07-14T16:06:23Z-1232620" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041755</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_6-sc-2011-07-14T16:06:23Z-1232620</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341722</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#7" center_name="SC" accession="ERX031796"> <IDENTIFIERS> <PRIMARY_ID>ERX031796</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341723, constructed from sample accession ERS041756 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041756" refname="Ura3_7-sc-2011-07-14T16:06:23Z-1232621" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041756</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_7-sc-2011-07-14T16:06:23Z-1232621</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341723</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#8" center_name="SC" accession="ERX031797"> <IDENTIFIERS> <PRIMARY_ID>ERX031797</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341724, constructed from sample accession ERS041757 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041757" refname="Ura3_8-sc-2011-07-14T16:06:24Z-1232622" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041757</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_8-sc-2011-07-14T16:06:24Z-1232622</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341724</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#9" center_name="SC" accession="ERX031798"> <IDENTIFIERS> <PRIMARY_ID>ERX031798</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341725, constructed from sample accession ERS041758 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041758" refname="Ura3_9-sc-2011-07-14T16:06:25Z-1232623" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041758</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_9-sc-2011-07-14T16:06:25Z-1232623</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341725</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#10" center_name="SC" accession="ERX031799"> <IDENTIFIERS> <PRIMARY_ID>ERX031799</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341726, constructed from sample accession ERS041759 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041759" refname="Ura3_10-sc-2011-07-14T16:06:26Z-1232624" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041759</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_10-sc-2011-07-14T16:06:26Z-1232624</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341726</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#11" center_name="SC" accession="ERX031800"> <IDENTIFIERS> <PRIMARY_ID>ERX031800</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341727, constructed from sample accession ERS041760 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041760" refname="Ura3_11-sc-2011-07-14T16:06:26Z-1232625" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041760</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_11-sc-2011-07-14T16:06:26Z-1232625</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341727</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#12" center_name="SC" accession="ERX031801"> <IDENTIFIERS> <PRIMARY_ID>ERX031801</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341728, constructed from sample accession ERS041761 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041761" refname="Ura3_13-sc-2011-07-14T16:06:28Z-1232626" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041761</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_13-sc-2011-07-14T16:06:28Z-1232626</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341728</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#13" center_name="SC" accession="ERX031802"> <IDENTIFIERS> <PRIMARY_ID>ERX031802</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341729, constructed from sample accession ERS041762 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041762" refname="Ura3_14-sc-2011-07-14T16:06:29Z-1232627" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041762</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_14-sc-2011-07-14T16:06:29Z-1232627</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341729</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#14" center_name="SC" accession="ERX031803"> <IDENTIFIERS> <PRIMARY_ID>ERX031803</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341730, constructed from sample accession ERS041763 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041763" refname="Ura3_15-sc-2011-07-14T16:06:29Z-1232628" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041763</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_15-sc-2011-07-14T16:06:29Z-1232628</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341730</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#15" center_name="SC" accession="ERX031804"> <IDENTIFIERS> <PRIMARY_ID>ERX031804</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341731, constructed from sample accession ERS041764 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041764" refname="Ura3_16-sc-2011-07-14T16:06:30Z-1232629" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041764</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_16-sc-2011-07-14T16:06:30Z-1232629</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341731</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#16" center_name="SC" accession="ERX031805"> <IDENTIFIERS> <PRIMARY_ID>ERX031805</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341732, constructed from sample accession ERS041765 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041765" refname="Ura3_17-sc-2011-07-14T16:06:30Z-1232630" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041765</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_17-sc-2011-07-14T16:06:30Z-1232630</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341732</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#17" center_name="SC" accession="ERX031806"> <IDENTIFIERS> <PRIMARY_ID>ERX031806</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341733, constructed from sample accession ERS041766 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041766" refname="Ura3_18-sc-2011-07-14T16:06:31Z-1232631" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041766</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_18-sc-2011-07-14T16:06:31Z-1232631</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341733</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#18" center_name="SC" accession="ERX031807"> <IDENTIFIERS> <PRIMARY_ID>ERX031807</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341734, constructed from sample accession ERS041767 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041767" refname="Ura3_19-sc-2011-07-14T16:06:32Z-1232632" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041767</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_19-sc-2011-07-14T16:06:32Z-1232632</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341734</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#19" center_name="SC" accession="ERX031808"> <IDENTIFIERS> <PRIMARY_ID>ERX031808</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341735, constructed from sample accession ERS041768 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041768" refname="Ura3_21-sc-2011-07-14T16:06:33Z-1232633" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041768</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_21-sc-2011-07-14T16:06:33Z-1232633</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341735</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#20" center_name="SC" accession="ERX031809"> <IDENTIFIERS> <PRIMARY_ID>ERX031809</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341736, constructed from sample accession ERS041769 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041769" refname="Ura3_22-sc-2011-07-14T16:06:34Z-1232634" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041769</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_22-sc-2011-07-14T16:06:34Z-1232634</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341736</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#21" center_name="SC" accession="ERX031810"> <IDENTIFIERS> <PRIMARY_ID>ERX031810</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341737, constructed from sample accession ERS041770 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041770" refname="Ura3_24-sc-2011-07-14T16:06:35Z-1232635" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041770</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_24-sc-2011-07-14T16:06:35Z-1232635</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341737</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#22" center_name="SC" accession="ERX031811"> <IDENTIFIERS> <PRIMARY_ID>ERX031811</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341738, constructed from sample accession ERS041771 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041771" refname="Ura3_25-sc-2011-07-14T16:06:35Z-1232636" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041771</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_25-sc-2011-07-14T16:06:35Z-1232636</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341738</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#23" center_name="SC" accession="ERX031812"> <IDENTIFIERS> <PRIMARY_ID>ERX031812</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341739, constructed from sample accession ERS041772 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041772" refname="Ura3_26-sc-2011-07-14T16:06:36Z-1232637" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041772</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_26-sc-2011-07-14T16:06:36Z-1232637</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341739</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#24" center_name="SC" accession="ERX031813"> <IDENTIFIERS> <PRIMARY_ID>ERX031813</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341740, constructed from sample accession ERS041773 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041773" refname="Ura3_27-sc-2011-07-14T16:06:37Z-1232638" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041773</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_27-sc-2011-07-14T16:06:37Z-1232638</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341740</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#25" center_name="SC" accession="ERX031814"> <IDENTIFIERS> <PRIMARY_ID>ERX031814</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#25</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341741, constructed from sample accession ERS041774 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGCGATCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041774" refname="Ura3_28-sc-2011-07-14T16:06:37Z-1232639" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041774</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_28-sc-2011-07-14T16:06:37Z-1232639</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341741</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#26" center_name="SC" accession="ERX031815"> <IDENTIFIERS> <PRIMARY_ID>ERX031815</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#26</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341742, constructed from sample accession ERS041775 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTCCTGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041775" refname="Ura3_29-sc-2011-07-14T16:06:38Z-1232640" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041775</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_29-sc-2011-07-14T16:06:38Z-1232640</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341742</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#27" center_name="SC" accession="ERX031816"> <IDENTIFIERS> <PRIMARY_ID>ERX031816</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#27</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341743, constructed from sample accession ERS041776 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAGTGACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041776" refname="Ura3_30-sc-2011-07-14T16:06:39Z-1232641" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041776</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_30-sc-2011-07-14T16:06:39Z-1232641</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341743</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#28" center_name="SC" accession="ERX031817"> <IDENTIFIERS> <PRIMARY_ID>ERX031817</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#28</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341744, constructed from sample accession ERS041777 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TACAGGAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041777" refname="Ura3_32-sc-2011-07-14T16:06:40Z-1232642" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041777</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_32-sc-2011-07-14T16:06:40Z-1232642</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341744</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#29" center_name="SC" accession="ERX031818"> <IDENTIFIERS> <PRIMARY_ID>ERX031818</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#29</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341745, constructed from sample accession ERS041778 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCCTCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041778" refname="Ura3_33-sc-2011-07-14T16:06:41Z-1232643" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041778</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_33-sc-2011-07-14T16:06:41Z-1232643</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341745</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#30" center_name="SC" accession="ERX031819"> <IDENTIFIERS> <PRIMARY_ID>ERX031819</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#30</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341746, constructed from sample accession ERS041779 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTGGTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041779" refname="Ura3_34-sc-2011-07-14T16:06:41Z-1232644" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041779</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_34-sc-2011-07-14T16:06:41Z-1232644</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341746</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#31" center_name="SC" accession="ERX031820"> <IDENTIFIERS> <PRIMARY_ID>ERX031820</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#31</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341747, constructed from sample accession ERS041780 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAGTCTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041780" refname="Ura3_35-sc-2011-07-14T16:06:42Z-1232645" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_35-sc-2011-07-14T16:06:42Z-1232645</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341747</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#32" center_name="SC" accession="ERX031821"> <IDENTIFIERS> <PRIMARY_ID>ERX031821</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#32</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341748, constructed from sample accession ERS041781 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTCCATTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041781" refname="Ura3_36-sc-2011-07-14T16:06:43Z-1232646" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041781</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_36-sc-2011-07-14T16:06:43Z-1232646</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341748</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#33" center_name="SC" accession="ERX031822"> <IDENTIFIERS> <PRIMARY_ID>ERX031822</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#33</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341749, constructed from sample accession ERS041782 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCGAAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041782" refname="Ura3_37-sc-2011-07-14T16:06:43Z-1232647" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041782</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_37-sc-2011-07-14T16:06:43Z-1232647</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341749</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#34" center_name="SC" accession="ERX031823"> <IDENTIFIERS> <PRIMARY_ID>ERX031823</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#34</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341750, constructed from sample accession ERS041783 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAACGCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041783" refname="Ura3_38-sc-2011-07-14T16:06:45Z-1232648" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041783</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_38-sc-2011-07-14T16:06:45Z-1232648</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341750</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#35" center_name="SC" accession="ERX031824"> <IDENTIFIERS> <PRIMARY_ID>ERX031824</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#35</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341751, constructed from sample accession ERS041784 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTGGTATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041784" refname="Ura3_39-sc-2011-07-14T16:06:45Z-1232649" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041784</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_39-sc-2011-07-14T16:06:45Z-1232649</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341751</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#36" center_name="SC" accession="ERX031825"> <IDENTIFIERS> <PRIMARY_ID>ERX031825</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#36</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341752, constructed from sample accession ERS041785 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGAACTGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041785" refname="Ura3_40-sc-2011-07-14T16:06:46Z-1232650" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041785</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_40-sc-2011-07-14T16:06:46Z-1232650</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341752</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#37" center_name="SC" accession="ERX031826"> <IDENTIFIERS> <PRIMARY_ID>ERX031826</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#37</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341753, constructed from sample accession ERS041786 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TACTTCGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041786" refname="Ura3_41-sc-2011-07-14T16:06:46Z-1232651" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041786</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_41-sc-2011-07-14T16:06:46Z-1232651</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341753</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#38" center_name="SC" accession="ERX031827"> <IDENTIFIERS> <PRIMARY_ID>ERX031827</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#38</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341754, constructed from sample accession ERS041787 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCTCACGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041787" refname="Ura3_42-sc-2011-07-14T16:06:47Z-1232652" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041787</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_42-sc-2011-07-14T16:06:47Z-1232652</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341754</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#39" center_name="SC" accession="ERX031828"> <IDENTIFIERS> <PRIMARY_ID>ERX031828</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#39</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341755, constructed from sample accession ERS041788 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCAGGAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041788" refname="Ura3_43-sc-2011-07-14T16:06:48Z-1232653" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041788</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_43-sc-2011-07-14T16:06:48Z-1232653</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341755</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#40" center_name="SC" accession="ERX031829"> <IDENTIFIERS> <PRIMARY_ID>ERX031829</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#40</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341756, constructed from sample accession ERS041789 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAAGTTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041789" refname="Ura3_44-sc-2011-07-14T16:06:48Z-1232654" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041789</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_44-sc-2011-07-14T16:06:48Z-1232654</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341756</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#41" center_name="SC" accession="ERX031830"> <IDENTIFIERS> <PRIMARY_ID>ERX031830</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#41</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341757, constructed from sample accession ERS041790 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCCAGTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041790" refname="Ura3_45-sc-2011-07-14T16:06:49Z-1232655" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041790</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_45-sc-2011-07-14T16:06:49Z-1232655</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341757</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#42" center_name="SC" accession="ERX031831"> <IDENTIFIERS> <PRIMARY_ID>ERX031831</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#42</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341758, constructed from sample accession ERS041791 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTATGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041791" refname="Ura3_46-sc-2011-07-14T16:06:51Z-1232656" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041791</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_46-sc-2011-07-14T16:06:51Z-1232656</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341758</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#43" center_name="SC" accession="ERX031832"> <IDENTIFIERS> <PRIMARY_ID>ERX031832</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#43</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341759, constructed from sample accession ERS041792 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCATTGAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041792" refname="Ura3_47-sc-2011-07-14T16:06:52Z-1232657" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041792</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_47-sc-2011-07-14T16:06:52Z-1232657</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341759</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#44" center_name="SC" accession="ERX031833"> <IDENTIFIERS> <PRIMARY_ID>ERX031833</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#44</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341760, constructed from sample accession ERS041793 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGGCTCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041793" refname="Ura3_48-sc-2011-07-14T16:06:52Z-1232658" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041793</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_48-sc-2011-07-14T16:06:52Z-1232658</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341760</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#45" center_name="SC" accession="ERX031834"> <IDENTIFIERS> <PRIMARY_ID>ERX031834</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#45</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341761, constructed from sample accession ERS041794 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TATGCCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041794" refname="Ura3_49-sc-2011-07-14T16:06:53Z-1232659" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041794</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_49-sc-2011-07-14T16:06:53Z-1232659</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341761</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#46" center_name="SC" accession="ERX031835"> <IDENTIFIERS> <PRIMARY_ID>ERX031835</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#46</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341762, constructed from sample accession ERS041795 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCAGATTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041795" refname="Ura3_50-sc-2011-07-14T16:06:54Z-1232660" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041795</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_50-sc-2011-07-14T16:06:54Z-1232660</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341762</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#47" center_name="SC" accession="ERX031836"> <IDENTIFIERS> <PRIMARY_ID>ERX031836</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#47</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341763, constructed from sample accession ERS041796 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TACTAGTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041796" refname="Ura3_51-sc-2011-07-14T16:06:54Z-1232661" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041796</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_51-sc-2011-07-14T16:06:54Z-1232661</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341763</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#48" center_name="SC" accession="ERX031837"> <IDENTIFIERS> <PRIMARY_ID>ERX031837</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#48</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341764, constructed from sample accession ERS041797 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTCAGCTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041797" refname="Ura3_52-sc-2011-07-14T16:06:55Z-1232662" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041797</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_52-sc-2011-07-14T16:06:55Z-1232662</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341764</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#49" center_name="SC" accession="ERX031838"> <IDENTIFIERS> <PRIMARY_ID>ERX031838</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#49</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341765, constructed from sample accession ERS041798 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTCTATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041798" refname="Ura3_53-sc-2011-07-14T16:06:56Z-1232663" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041798</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_53-sc-2011-07-14T16:06:56Z-1232663</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341765</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#50" center_name="SC" accession="ERX031839"> <IDENTIFIERS> <PRIMARY_ID>ERX031839</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#50</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341766, constructed from sample accession ERS041799 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TATGTGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041799" refname="Ura3_54-sc-2011-07-14T16:06:57Z-1232664" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041799</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_54-sc-2011-07-14T16:06:57Z-1232664</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341766</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#51" center_name="SC" accession="ERX031840"> <IDENTIFIERS> <PRIMARY_ID>ERX031840</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#51</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341767, constructed from sample accession ERS041800 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTACTCGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041800" refname="Ura3_55-sc-2011-07-14T16:06:58Z-1232665" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041800</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_55-sc-2011-07-14T16:06:58Z-1232665</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341767</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#52" center_name="SC" accession="ERX031841"> <IDENTIFIERS> <PRIMARY_ID>ERX031841</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#52</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341768, constructed from sample accession ERS041801 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCGTTAGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041801" refname="Ura3_56-sc-2011-07-14T16:06:58Z-1232666" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041801</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_56-sc-2011-07-14T16:06:58Z-1232666</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341768</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#53" center_name="SC" accession="ERX031842"> <IDENTIFIERS> <PRIMARY_ID>ERX031842</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#53</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341769, constructed from sample accession ERS041802 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TACCGAGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041802" refname="Ura3_57-sc-2011-07-14T16:06:59Z-1232667" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041802</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_57-sc-2011-07-14T16:06:59Z-1232667</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341769</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#54" center_name="SC" accession="ERX031843"> <IDENTIFIERS> <PRIMARY_ID>ERX031843</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#54</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341770, constructed from sample accession ERS041803 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTTCTCC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041803" refname="Ura3_58-sc-2011-07-14T16:06:59Z-1232668" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041803</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_58-sc-2011-07-14T16:06:59Z-1232668</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341770</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#55" center_name="SC" accession="ERX031844"> <IDENTIFIERS> <PRIMARY_ID>ERX031844</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#55</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341771, constructed from sample accession ERS041804 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTCGCACC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041804" refname="Ura3_59-sc-2011-07-14T16:07:00Z-1232669" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041804</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_59-sc-2011-07-14T16:07:00Z-1232669</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341771</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#56" center_name="SC" accession="ERX031845"> <IDENTIFIERS> <PRIMARY_ID>ERX031845</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#56</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341772, constructed from sample accession ERS041805 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTGCGTAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041805" refname="Ura3_60-sc-2011-07-14T16:07:00Z-1232670" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041805</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_60-sc-2011-07-14T16:07:00Z-1232670</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341772</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#57" center_name="SC" accession="ERX031846"> <IDENTIFIERS> <PRIMARY_ID>ERX031846</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#57</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341773, constructed from sample accession ERS041806 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCTACGAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041806" refname="Ura3_61-sc-2011-07-14T16:07:02Z-1232671" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041806</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_61-sc-2011-07-14T16:07:02Z-1232671</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341773</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#58" center_name="SC" accession="ERX031847"> <IDENTIFIERS> <PRIMARY_ID>ERX031847</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#58</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341774, constructed from sample accession ERS041807 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGACAGAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041807" refname="Ura3_62-sc-2011-07-14T16:07:02Z-1232672" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041807</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_62-sc-2011-07-14T16:07:02Z-1232672</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341774</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#59" center_name="SC" accession="ERX031848"> <IDENTIFIERS> <PRIMARY_ID>ERX031848</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#59</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341775, constructed from sample accession ERS041808 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAGAACAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041808" refname="Ura3_63-sc-2011-07-14T16:07:03Z-1232673" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041808</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_63-sc-2011-07-14T16:07:03Z-1232673</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341775</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#60" center_name="SC" accession="ERX031849"> <IDENTIFIERS> <PRIMARY_ID>ERX031849</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#60</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341776, constructed from sample accession ERS041809 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCATCCTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041809" refname="Ura3_64-sc-2011-07-14T16:07:04Z-1232674" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041809</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_64-sc-2011-07-14T16:07:04Z-1232674</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341776</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#61" center_name="SC" accession="ERX031850"> <IDENTIFIERS> <PRIMARY_ID>ERX031850</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#61</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341777, constructed from sample accession ERS041810 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGCTGATA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041810" refname="Ura3_65-sc-2011-07-14T16:07:04Z-1232675" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041810</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_65-sc-2011-07-14T16:07:04Z-1232675</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341777</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#62" center_name="SC" accession="ERX031851"> <IDENTIFIERS> <PRIMARY_ID>ERX031851</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#62</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341778, constructed from sample accession ERS041811 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TAGACGGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041811" refname="Ura3_66-sc-2011-07-14T16:07:05Z-1232676" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041811</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_66-sc-2011-07-14T16:07:05Z-1232676</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341778</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#63" center_name="SC" accession="ERX031852"> <IDENTIFIERS> <PRIMARY_ID>ERX031852</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#63</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341779, constructed from sample accession ERS041812 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGTGAAGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041812" refname="Ura3_67-sc-2011-07-14T16:07:06Z-1232677" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041812</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_67-sc-2011-07-14T16:07:06Z-1232677</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341779</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#64" center_name="SC" accession="ERX031853"> <IDENTIFIERS> <PRIMARY_ID>ERX031853</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#64</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341780, constructed from sample accession ERS041813 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TCTCTTCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041813" refname="Ura3_68-sc-2011-07-14T16:07:07Z-1232678" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041813</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_68-sc-2011-07-14T16:07:07Z-1232678</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341780</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#65" center_name="SC" accession="ERX031854"> <IDENTIFIERS> <PRIMARY_ID>ERX031854</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#65</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341781, constructed from sample accession ERS041814 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TTGTTCCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041814" refname="Ura3_69-sc-2011-07-14T16:07:08Z-1232679" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041814</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_69-sc-2011-07-14T16:07:08Z-1232679</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341781</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#66" center_name="SC" accession="ERX031855"> <IDENTIFIERS> <PRIMARY_ID>ERX031855</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#66</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341782, constructed from sample accession ERS041815 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGAAGCCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041815" refname="Ura3_70-sc-2011-07-14T16:07:09Z-1232680" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041815</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_70-sc-2011-07-14T16:07:09Z-1232680</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341782</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#67" center_name="SC" accession="ERX031856"> <IDENTIFIERS> <PRIMARY_ID>ERX031856</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#67</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341783, constructed from sample accession ERS041816 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TACCACCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041816" refname="Ura3_71-sc-2011-07-14T16:07:09Z-1232681" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041816</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_71-sc-2011-07-14T16:07:09Z-1232681</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341783</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#68" center_name="SC" accession="ERX031857"> <IDENTIFIERS> <PRIMARY_ID>ERX031857</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#68</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341784, constructed from sample accession ERS041817 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence TGCGTGAA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041817" refname="Ura3_72-sc-2011-07-14T16:07:10Z-1232682" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041817</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_72-sc-2011-07-14T16:07:10Z-1232682</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341784</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#69" center_name="SC" accession="ERX031858"> <IDENTIFIERS> <PRIMARY_ID>ERX031858</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#69</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341785, constructed from sample accession ERS041818 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GGTGAGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041818" refname="Ura3_73-sc-2011-07-14T16:07:10Z-1232683" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041818</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_73-sc-2011-07-14T16:07:10Z-1232683</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341785</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#70" center_name="SC" accession="ERX031859"> <IDENTIFIERS> <PRIMARY_ID>ERX031859</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#70</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341786, constructed from sample accession ERS041819 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GATCTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041819" refname="Ura3_74-sc-2011-07-14T16:07:11Z-1232684" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041819</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_74-sc-2011-07-14T16:07:11Z-1232684</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341786</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#71" center_name="SC" accession="ERX031860"> <IDENTIFIERS> <PRIMARY_ID>ERX031860</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#71</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341787, constructed from sample accession ERS041820 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTGTCCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041820" refname="Ura3_75-sc-2011-07-14T16:07:12Z-1232685" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041820</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_75-sc-2011-07-14T16:07:12Z-1232685</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341787</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#72" center_name="SC" accession="ERX031861"> <IDENTIFIERS> <PRIMARY_ID>ERX031861</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#72</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341788, constructed from sample accession ERS041821 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GACGGATT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041821" refname="Ura3_76-sc-2011-07-14T16:07:13Z-1232686" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041821</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_76-sc-2011-07-14T16:07:13Z-1232686</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341788</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#73" center_name="SC" accession="ERX031862"> <IDENTIFIERS> <PRIMARY_ID>ERX031862</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#73</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341789, constructed from sample accession ERS041822 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCAACATT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041822" refname="Ura3_77-sc-2011-07-14T16:07:14Z-1232687" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041822</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_77-sc-2011-07-14T16:07:14Z-1232687</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341789</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#74" center_name="SC" accession="ERX031863"> <IDENTIFIERS> <PRIMARY_ID>ERX031863</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#74</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341790, constructed from sample accession ERS041823 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GGTCGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041823" refname="Ura3_78-sc-2011-07-14T16:07:14Z-1232688" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041823</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_78-sc-2011-07-14T16:07:14Z-1232688</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341790</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#75" center_name="SC" accession="ERX031864"> <IDENTIFIERS> <PRIMARY_ID>ERX031864</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#75</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341791, constructed from sample accession ERS041824 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GAATCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041824" refname="Ura3_79-sc-2011-07-14T16:07:15Z-1232689" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041824</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_79-sc-2011-07-14T16:07:15Z-1232689</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341791</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#76" center_name="SC" accession="ERX031865"> <IDENTIFIERS> <PRIMARY_ID>ERX031865</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#76</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341792, constructed from sample accession ERS041825 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTACATCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041825" refname="Ura3_80-sc-2011-07-14T16:07:16Z-1232690" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041825</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_80-sc-2011-07-14T16:07:16Z-1232690</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341792</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#77" center_name="SC" accession="ERX031866"> <IDENTIFIERS> <PRIMARY_ID>ERX031866</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#77</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341793, constructed from sample accession ERS041826 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GAGGTGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041826" refname="Ura3_81-sc-2011-07-14T16:07:16Z-1232691" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041826</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_81-sc-2011-07-14T16:07:16Z-1232691</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341793</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#78" center_name="SC" accession="ERX031867"> <IDENTIFIERS> <PRIMARY_ID>ERX031867</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#78</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341794, constructed from sample accession ERS041827 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCATGGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041827" refname="Ura3_82-sc-2011-07-14T16:07:17Z-1232692" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041827</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_82-sc-2011-07-14T16:07:17Z-1232692</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341794</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#79" center_name="SC" accession="ERX031868"> <IDENTIFIERS> <PRIMARY_ID>ERX031868</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#79</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341795, constructed from sample accession ERS041828 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTTAGCCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041828" refname="Ura3_83-sc-2011-07-14T16:07:19Z-1232693" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041828</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_83-sc-2011-07-14T16:07:19Z-1232693</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341795</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#80" center_name="SC" accession="ERX031869"> <IDENTIFIERS> <PRIMARY_ID>ERX031869</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#80</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341796, constructed from sample accession ERS041829 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTCGCTAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041829" refname="Ura3_84-sc-2011-07-14T16:07:19Z-1232694" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041829</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_84-sc-2011-07-14T16:07:19Z-1232694</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341796</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#81" center_name="SC" accession="ERX031870"> <IDENTIFIERS> <PRIMARY_ID>ERX031870</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#81</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341797, constructed from sample accession ERS041830 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GGAATGAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041830" refname="Ura3_85-sc-2011-07-14T16:07:20Z-1232695" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041830</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_85-sc-2011-07-14T16:07:20Z-1232695</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341797</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#82" center_name="SC" accession="ERX031871"> <IDENTIFIERS> <PRIMARY_ID>ERX031871</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#82</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341798, constructed from sample accession ERS041831 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GAGCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041831" refname="Ura3_86-sc-2011-07-14T16:07:21Z-1232696" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041831</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_86-sc-2011-07-14T16:07:21Z-1232696</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341798</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#83" center_name="SC" accession="ERX031872"> <IDENTIFIERS> <PRIMARY_ID>ERX031872</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#83</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341799, constructed from sample accession ERS041832 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCTCCTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041832" refname="Ura3_87-sc-2011-07-14T16:07:21Z-1232697" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041832</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_87-sc-2011-07-14T16:07:21Z-1232697</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341799</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#84" center_name="SC" accession="ERX031873"> <IDENTIFIERS> <PRIMARY_ID>ERX031873</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#84</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341800, constructed from sample accession ERS041833 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTAAGGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041833" refname="Ura3_120-sc-2011-07-14T16:07:22Z-1232698" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041833</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_120-sc-2011-07-14T16:07:22Z-1232698</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341800</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#85" center_name="SC" accession="ERX031874"> <IDENTIFIERS> <PRIMARY_ID>ERX031874</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#85</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341801, constructed from sample accession ERS041834 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GAGGATGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041834" refname="Ura3_121-sc-2011-07-14T16:07:23Z-1232699" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041834</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_121-sc-2011-07-14T16:07:23Z-1232699</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341801</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#86" center_name="SC" accession="ERX031875"> <IDENTIFIERS> <PRIMARY_ID>ERX031875</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#86</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341802, constructed from sample accession ERS041835 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTTGTCGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041835" refname="Ura3_122-sc-2011-07-14T16:07:23Z-1232700" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041835</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_122-sc-2011-07-14T16:07:23Z-1232700</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341802</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#87" center_name="SC" accession="ERX031876"> <IDENTIFIERS> <PRIMARY_ID>ERX031876</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#87</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341803, constructed from sample accession ERS041836 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GGATTAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041836" refname="Ura3_123-sc-2011-07-14T16:07:25Z-1232701" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041836</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_123-sc-2011-07-14T16:07:25Z-1232701</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341803</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#88" center_name="SC" accession="ERX031877"> <IDENTIFIERS> <PRIMARY_ID>ERX031877</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#88</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341804, constructed from sample accession ERS041837 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GATAGAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041837" refname="Ura3_124-sc-2011-07-14T16:07:25Z-1232702" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041837</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_124-sc-2011-07-14T16:07:25Z-1232702</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341804</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#89" center_name="SC" accession="ERX031878"> <IDENTIFIERS> <PRIMARY_ID>ERX031878</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#89</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341805, constructed from sample accession ERS041838 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTGTGTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041838" refname="Ura3_126-sc-2011-07-14T16:07:26Z-1232703" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041838</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_126-sc-2011-07-14T16:07:26Z-1232703</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341805</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#90" center_name="SC" accession="ERX031879"> <IDENTIFIERS> <PRIMARY_ID>ERX031879</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#90</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341806, constructed from sample accession ERS041839 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCAATCCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041839" refname="Ura3_127-sc-2011-07-14T16:07:26Z-1232704" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041839</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_127-sc-2011-07-14T16:07:26Z-1232704</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341806</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#91" center_name="SC" accession="ERX031880"> <IDENTIFIERS> <PRIMARY_ID>ERX031880</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#91</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341807, constructed from sample accession ERS041840 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GACCTTAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041840" refname="Ura3_128-sc-2011-07-14T16:07:27Z-1232705" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041840</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_128-sc-2011-07-14T16:07:27Z-1232705</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341807</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#92" center_name="SC" accession="ERX031881"> <IDENTIFIERS> <PRIMARY_ID>ERX031881</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#92</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341808, constructed from sample accession ERS041841 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCCTGTTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041841" refname="Ura3_129-sc-2011-07-14T16:07:28Z-1232706" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041841</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_129-sc-2011-07-14T16:07:28Z-1232706</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341808</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#93" center_name="SC" accession="ERX031882"> <IDENTIFIERS> <PRIMARY_ID>ERX031882</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#93</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341809, constructed from sample accession ERS041842 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCACTGTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041842" refname="Ura3_130-sc-2011-07-14T16:07:28Z-1232707" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041842</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_130-sc-2011-07-14T16:07:28Z-1232707</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341809</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#94" center_name="SC" accession="ERX031883"> <IDENTIFIERS> <PRIMARY_ID>ERX031883</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#94</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341810, constructed from sample accession ERS041843 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GCTAACTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041843" refname="Ura3_131-sc-2011-07-14T16:07:30Z-1232708" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041843</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_131-sc-2011-07-14T16:07:30Z-1232708</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341810</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#95" center_name="SC" accession="ERX031884"> <IDENTIFIERS> <PRIMARY_ID>ERX031884</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#95</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341811, constructed from sample accession ERS041844 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GATTCATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041844" refname="Ura3_132-sc-2011-07-14T16:07:30Z-1232709" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041844</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_132-sc-2011-07-14T16:07:30Z-1232709</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341811</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_5#96" center_name="SC" accession="ERX031885"> <IDENTIFIERS> <PRIMARY_ID>ERX031885</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_5#96</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341812, constructed from sample accession ERS041845 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_5). This submission includes reads tagged with the sequence GTCTTGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041845" refname="Ura3_133-sc-2011-07-14T16:07:31Z-1232710" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041845</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Ura3_133-sc-2011-07-14T16:07:31Z-1232710</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341812</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="226" NOMINAL_SDEV="64"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#96" center_name="SC" accession="ERX031981"> <IDENTIFIERS> <PRIMARY_ID>ERX031981</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#96</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342017, constructed from sample accession ERS041941 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTCTTGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041941" refname="Lys_306-sc-2011-07-14T16:08:46Z-1232806" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_306-sc-2011-07-14T16:08:46Z-1232806</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342017</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#1" center_name="SC" accession="ERX031886"> <IDENTIFIERS> <PRIMARY_ID>ERX031886</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341922, constructed from sample accession ERS041846 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence ATCACGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041846" refname="Lys_201-sc-2011-07-14T16:07:32Z-1232711" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041846</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_201-sc-2011-07-14T16:07:32Z-1232711</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341922</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#2" center_name="SC" accession="ERX031887"> <IDENTIFIERS> <PRIMARY_ID>ERX031887</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341923, constructed from sample accession ERS041847 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence CGATGTTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041847" refname="Lys_202-sc-2011-07-14T16:07:32Z-1232712" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041847</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_202-sc-2011-07-14T16:07:32Z-1232712</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341923</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#3" center_name="SC" accession="ERX031888"> <IDENTIFIERS> <PRIMARY_ID>ERX031888</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341924, constructed from sample accession ERS041848 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTAGGCAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041848" refname="Lys_203-sc-2011-07-14T16:07:33Z-1232713" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041848</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_203-sc-2011-07-14T16:07:33Z-1232713</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341924</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#4" center_name="SC" accession="ERX031889"> <IDENTIFIERS> <PRIMARY_ID>ERX031889</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341925, constructed from sample accession ERS041849 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGACCACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041849" refname="Lys_204-sc-2011-07-14T16:07:33Z-1232714" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041849</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_204-sc-2011-07-14T16:07:33Z-1232714</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341925</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#5" center_name="SC" accession="ERX031890"> <IDENTIFIERS> <PRIMARY_ID>ERX031890</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341926, constructed from sample accession ERS041850 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence ACAGTGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041850" refname="Lys_205-sc-2011-07-14T16:07:34Z-1232715" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041850</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_205-sc-2011-07-14T16:07:34Z-1232715</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341926</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#6" center_name="SC" accession="ERX031891"> <IDENTIFIERS> <PRIMARY_ID>ERX031891</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341927, constructed from sample accession ERS041851 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCCAATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041851" refname="Lys_206-sc-2011-07-14T16:07:35Z-1232716" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041851</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_206-sc-2011-07-14T16:07:35Z-1232716</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341927</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#7" center_name="SC" accession="ERX031892"> <IDENTIFIERS> <PRIMARY_ID>ERX031892</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341928, constructed from sample accession ERS041852 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence CAGATCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041852" refname="Lys_207-sc-2011-07-14T16:07:36Z-1232717" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041852</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_207-sc-2011-07-14T16:07:36Z-1232717</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341928</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#8" center_name="SC" accession="ERX031893"> <IDENTIFIERS> <PRIMARY_ID>ERX031893</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341929, constructed from sample accession ERS041853 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence ACTTGATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041853" refname="Lys_208-sc-2011-07-14T16:07:37Z-1232718" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041853</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_208-sc-2011-07-14T16:07:37Z-1232718</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341929</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#9" center_name="SC" accession="ERX031894"> <IDENTIFIERS> <PRIMARY_ID>ERX031894</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341930, constructed from sample accession ERS041854 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GATCAGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041854" refname="Lys_209-sc-2011-07-14T16:07:37Z-1232719" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041854</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_209-sc-2011-07-14T16:07:37Z-1232719</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341930</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#10" center_name="SC" accession="ERX031895"> <IDENTIFIERS> <PRIMARY_ID>ERX031895</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341931, constructed from sample accession ERS041855 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAGCTTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041855" refname="Lys_210-sc-2011-07-14T16:07:38Z-1232720" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041855</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_210-sc-2011-07-14T16:07:38Z-1232720</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341931</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#11" center_name="SC" accession="ERX031896"> <IDENTIFIERS> <PRIMARY_ID>ERX031896</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341932, constructed from sample accession ERS041856 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GGCTACAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041856" refname="Lys_211-sc-2011-07-14T16:07:39Z-1232721" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041856</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_211-sc-2011-07-14T16:07:39Z-1232721</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341932</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#12" center_name="SC" accession="ERX031897"> <IDENTIFIERS> <PRIMARY_ID>ERX031897</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341933, constructed from sample accession ERS041857 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence CTTGTACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041857" refname="Lys_212-sc-2011-07-14T16:07:40Z-1232722" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041857</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_212-sc-2011-07-14T16:07:40Z-1232722</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341933</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#13" center_name="SC" accession="ERX031898"> <IDENTIFIERS> <PRIMARY_ID>ERX031898</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#13</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341934, constructed from sample accession ERS041858 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGGTTGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041858" refname="Lys_213-sc-2011-07-14T16:07:42Z-1232723" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041858</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_213-sc-2011-07-14T16:07:42Z-1232723</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341934</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#14" center_name="SC" accession="ERX031899"> <IDENTIFIERS> <PRIMARY_ID>ERX031899</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341935, constructed from sample accession ERS041859 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCTCGGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041859" refname="Lys_214-sc-2011-07-14T16:07:43Z-1232724" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041859</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_214-sc-2011-07-14T16:07:43Z-1232724</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341935</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#15" center_name="SC" accession="ERX031900"> <IDENTIFIERS> <PRIMARY_ID>ERX031900</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#15</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341936, constructed from sample accession ERS041860 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAAGCGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041860" refname="Lys_215-sc-2011-07-14T16:07:43Z-1232725" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041860</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_215-sc-2011-07-14T16:07:43Z-1232725</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341936</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#16" center_name="SC" accession="ERX031901"> <IDENTIFIERS> <PRIMARY_ID>ERX031901</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#16</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341937, constructed from sample accession ERS041861 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCCGTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041861" refname="Lys_216-sc-2011-07-14T16:07:44Z-1232726" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041861</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_216-sc-2011-07-14T16:07:44Z-1232726</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341937</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#17" center_name="SC" accession="ERX031902"> <IDENTIFIERS> <PRIMARY_ID>ERX031902</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#17</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341938, constructed from sample accession ERS041862 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTACCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041862" refname="Lys_217-sc-2011-07-14T16:07:45Z-1232727" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041862</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_217-sc-2011-07-14T16:07:45Z-1232727</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341938</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#18" center_name="SC" accession="ERX031903"> <IDENTIFIERS> <PRIMARY_ID>ERX031903</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#18</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341939, constructed from sample accession ERS041863 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTCTGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041863" refname="Lys_218-sc-2011-07-14T16:07:45Z-1232728" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041863</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_218-sc-2011-07-14T16:07:45Z-1232728</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341939</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#19" center_name="SC" accession="ERX031904"> <IDENTIFIERS> <PRIMARY_ID>ERX031904</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#19</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341940, constructed from sample accession ERS041864 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCTGCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041864" refname="Lys_219-sc-2011-07-14T16:07:46Z-1232729" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041864</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_219-sc-2011-07-14T16:07:46Z-1232729</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341940</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#20" center_name="SC" accession="ERX031905"> <IDENTIFIERS> <PRIMARY_ID>ERX031905</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#20</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341941, constructed from sample accession ERS041865 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTGGAGGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041865" refname="Lys_220-sc-2011-07-14T16:07:47Z-1232730" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041865</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_220-sc-2011-07-14T16:07:47Z-1232730</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341941</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#21" center_name="SC" accession="ERX031906"> <IDENTIFIERS> <PRIMARY_ID>ERX031906</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#21</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341942, constructed from sample accession ERS041866 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCGAGCGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041866" refname="Lys_221-sc-2011-07-14T16:07:48Z-1232731" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041866</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_221-sc-2011-07-14T16:07:48Z-1232731</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341942</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#22" center_name="SC" accession="ERX031907"> <IDENTIFIERS> <PRIMARY_ID>ERX031907</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#22</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341943, constructed from sample accession ERS041867 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGATACGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041867" refname="Lys_222-sc-2011-07-14T16:07:49Z-1232732" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041867</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_222-sc-2011-07-14T16:07:49Z-1232732</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341943</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#23" center_name="SC" accession="ERX031908"> <IDENTIFIERS> <PRIMARY_ID>ERX031908</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#23</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341944, constructed from sample accession ERS041868 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGCATAGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041868" refname="Lys_223-sc-2011-07-14T16:07:50Z-1232733" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041868</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_223-sc-2011-07-14T16:07:50Z-1232733</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341944</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#24" center_name="SC" accession="ERX031909"> <IDENTIFIERS> <PRIMARY_ID>ERX031909</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#24</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341945, constructed from sample accession ERS041869 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTGACTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041869" refname="Lys_224-sc-2011-07-14T16:07:50Z-1232734" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041869</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_224-sc-2011-07-14T16:07:50Z-1232734</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341945</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#25" center_name="SC" accession="ERX031910"> <IDENTIFIERS> <PRIMARY_ID>ERX031910</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#25</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341946, constructed from sample accession ERS041870 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGCGATCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041870" refname="Lys_227-sc-2011-07-14T16:07:51Z-1232735" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041870</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_227-sc-2011-07-14T16:07:51Z-1232735</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341946</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#26" center_name="SC" accession="ERX031911"> <IDENTIFIERS> <PRIMARY_ID>ERX031911</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#26</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341947, constructed from sample accession ERS041871 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTCCTGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041871" refname="Lys_228-sc-2011-07-14T16:07:52Z-1232736" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041871</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_228-sc-2011-07-14T16:07:52Z-1232736</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341947</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#27" center_name="SC" accession="ERX031912"> <IDENTIFIERS> <PRIMARY_ID>ERX031912</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#27</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341948, constructed from sample accession ERS041872 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAGTGACT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041872" refname="Lys_229-sc-2011-07-14T16:07:52Z-1232737" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041872</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_229-sc-2011-07-14T16:07:52Z-1232737</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341948</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#28" center_name="SC" accession="ERX031913"> <IDENTIFIERS> <PRIMARY_ID>ERX031913</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#28</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341949, constructed from sample accession ERS041873 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TACAGGAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041873" refname="Lys_230-sc-2011-07-14T16:07:54Z-1232738" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041873</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_230-sc-2011-07-14T16:07:54Z-1232738</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341949</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#29" center_name="SC" accession="ERX031914"> <IDENTIFIERS> <PRIMARY_ID>ERX031914</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#29</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341950, constructed from sample accession ERS041874 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCCTCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041874" refname="Lys_231-sc-2011-07-14T16:07:54Z-1232739" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041874</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_231-sc-2011-07-14T16:07:54Z-1232739</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341950</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#30" center_name="SC" accession="ERX031915"> <IDENTIFIERS> <PRIMARY_ID>ERX031915</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#30</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341951, constructed from sample accession ERS041875 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTGGTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041875" refname="Lys_232-sc-2011-07-14T16:07:55Z-1232740" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041875</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_232-sc-2011-07-14T16:07:55Z-1232740</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341951</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#31" center_name="SC" accession="ERX031916"> <IDENTIFIERS> <PRIMARY_ID>ERX031916</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#31</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341952, constructed from sample accession ERS041876 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAGTCTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041876" refname="Lys_233-sc-2011-07-14T16:07:56Z-1232741" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041876</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_233-sc-2011-07-14T16:07:56Z-1232741</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341952</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#32" center_name="SC" accession="ERX031917"> <IDENTIFIERS> <PRIMARY_ID>ERX031917</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#32</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341953, constructed from sample accession ERS041877 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTCCATTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041877" refname="Lys_234-sc-2011-07-14T16:07:56Z-1232742" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041877</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_234-sc-2011-07-14T16:07:56Z-1232742</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341953</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#33" center_name="SC" accession="ERX031918"> <IDENTIFIERS> <PRIMARY_ID>ERX031918</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#33</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341954, constructed from sample accession ERS041878 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCGAAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041878" refname="Lys_235-sc-2011-07-14T16:07:57Z-1232743" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041878</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_235-sc-2011-07-14T16:07:57Z-1232743</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341954</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#34" center_name="SC" accession="ERX031919"> <IDENTIFIERS> <PRIMARY_ID>ERX031919</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#34</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341955, constructed from sample accession ERS041879 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAACGCTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041879" refname="Lys_236-sc-2011-07-14T16:07:57Z-1232744" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041879</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_236-sc-2011-07-14T16:07:57Z-1232744</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341955</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#35" center_name="SC" accession="ERX031920"> <IDENTIFIERS> <PRIMARY_ID>ERX031920</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#35</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341956, constructed from sample accession ERS041880 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTGGTATG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041880" refname="Lys_237-sc-2011-07-14T16:07:58Z-1232745" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041880</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_237-sc-2011-07-14T16:07:58Z-1232745</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341956</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#36" center_name="SC" accession="ERX031921"> <IDENTIFIERS> <PRIMARY_ID>ERX031921</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#36</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341957, constructed from sample accession ERS041881 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGAACTGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041881" refname="Lys_238-sc-2011-07-14T16:08:00Z-1232746" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041881</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_238-sc-2011-07-14T16:08:00Z-1232746</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341957</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#37" center_name="SC" accession="ERX031922"> <IDENTIFIERS> <PRIMARY_ID>ERX031922</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#37</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341958, constructed from sample accession ERS041882 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TACTTCGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041882" refname="Lys_239-sc-2011-07-14T16:08:01Z-1232747" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041882</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_239-sc-2011-07-14T16:08:01Z-1232747</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341958</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#38" center_name="SC" accession="ERX031923"> <IDENTIFIERS> <PRIMARY_ID>ERX031923</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#38</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341959, constructed from sample accession ERS041883 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCTCACGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041883" refname="Lys_241-sc-2011-07-14T16:08:01Z-1232748" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041883</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_241-sc-2011-07-14T16:08:01Z-1232748</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341959</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#39" center_name="SC" accession="ERX031924"> <IDENTIFIERS> <PRIMARY_ID>ERX031924</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#39</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341960, constructed from sample accession ERS041884 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCAGGAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041884" refname="Lys_243-sc-2011-07-14T16:08:02Z-1232749" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041884</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_243-sc-2011-07-14T16:08:02Z-1232749</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341960</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#40" center_name="SC" accession="ERX031925"> <IDENTIFIERS> <PRIMARY_ID>ERX031925</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#40</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341961, constructed from sample accession ERS041885 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAAGTTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041885" refname="Lys_244-sc-2011-07-14T16:08:02Z-1232750" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041885</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_244-sc-2011-07-14T16:08:02Z-1232750</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341961</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#41" center_name="SC" accession="ERX031926"> <IDENTIFIERS> <PRIMARY_ID>ERX031926</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#41</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341962, constructed from sample accession ERS041886 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCCAGTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041886" refname="Lys_245-sc-2011-07-14T16:08:03Z-1232751" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041886</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_245-sc-2011-07-14T16:08:03Z-1232751</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341962</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#42" center_name="SC" accession="ERX031927"> <IDENTIFIERS> <PRIMARY_ID>ERX031927</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#42</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341963, constructed from sample accession ERS041887 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTATGCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041887" refname="Lys_246-sc-2011-07-14T16:08:04Z-1232752" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041887</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_246-sc-2011-07-14T16:08:04Z-1232752</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341963</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#43" center_name="SC" accession="ERX031928"> <IDENTIFIERS> <PRIMARY_ID>ERX031928</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#43</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341964, constructed from sample accession ERS041888 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCATTGAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041888" refname="Lys_247-sc-2011-07-14T16:08:05Z-1232753" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041888</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_247-sc-2011-07-14T16:08:05Z-1232753</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341964</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#44" center_name="SC" accession="ERX031929"> <IDENTIFIERS> <PRIMARY_ID>ERX031929</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#44</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341965, constructed from sample accession ERS041889 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGGCTCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041889" refname="Lys_248-sc-2011-07-14T16:08:06Z-1232754" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041889</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_248-sc-2011-07-14T16:08:06Z-1232754</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341965</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#45" center_name="SC" accession="ERX031930"> <IDENTIFIERS> <PRIMARY_ID>ERX031930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#45</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341966, constructed from sample accession ERS041890 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TATGCCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041890" refname="Lys_249-sc-2011-07-14T16:08:06Z-1232755" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041890</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_249-sc-2011-07-14T16:08:06Z-1232755</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341966</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#46" center_name="SC" accession="ERX031931"> <IDENTIFIERS> <PRIMARY_ID>ERX031931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#46</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341967, constructed from sample accession ERS041891 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCAGATTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041891" refname="Lys_250-sc-2011-07-14T16:08:07Z-1232756" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041891</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_250-sc-2011-07-14T16:08:07Z-1232756</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341967</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#47" center_name="SC" accession="ERX031932"> <IDENTIFIERS> <PRIMARY_ID>ERX031932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#47</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341968, constructed from sample accession ERS041892 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TACTAGTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041892" refname="Lys_251-sc-2011-07-14T16:08:08Z-1232757" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041892</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_251-sc-2011-07-14T16:08:08Z-1232757</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341968</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#48" center_name="SC" accession="ERX031933"> <IDENTIFIERS> <PRIMARY_ID>ERX031933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#48</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341969, constructed from sample accession ERS041893 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTCAGCTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041893" refname="Lys_252-sc-2011-07-14T16:08:08Z-1232758" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041893</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_252-sc-2011-07-14T16:08:08Z-1232758</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341969</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#49" center_name="SC" accession="ERX031934"> <IDENTIFIERS> <PRIMARY_ID>ERX031934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#49</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341970, constructed from sample accession ERS041894 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTCTATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041894" refname="Lys_253-sc-2011-07-14T16:08:09Z-1232759" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041894</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_253-sc-2011-07-14T16:08:09Z-1232759</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341970</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#50" center_name="SC" accession="ERX031935"> <IDENTIFIERS> <PRIMARY_ID>ERX031935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#50</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341971, constructed from sample accession ERS041895 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TATGTGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041895" refname="Lys_254-sc-2011-07-14T16:08:09Z-1232760" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041895</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_254-sc-2011-07-14T16:08:09Z-1232760</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341971</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#51" center_name="SC" accession="ERX031936"> <IDENTIFIERS> <PRIMARY_ID>ERX031936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#51</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341972, constructed from sample accession ERS041896 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTACTCGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041896" refname="Lys_255-sc-2011-07-14T16:08:11Z-1232761" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041896</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_255-sc-2011-07-14T16:08:11Z-1232761</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341972</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#52" center_name="SC" accession="ERX031937"> <IDENTIFIERS> <PRIMARY_ID>ERX031937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#52</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341973, constructed from sample accession ERS041897 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCGTTAGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041897" refname="Lys_256-sc-2011-07-14T16:08:12Z-1232762" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041897</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_256-sc-2011-07-14T16:08:12Z-1232762</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341973</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#53" center_name="SC" accession="ERX031938"> <IDENTIFIERS> <PRIMARY_ID>ERX031938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#53</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341974, constructed from sample accession ERS041898 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TACCGAGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041898" refname="Lys_257-sc-2011-07-14T16:08:12Z-1232763" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041898</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_257-sc-2011-07-14T16:08:12Z-1232763</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341974</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#54" center_name="SC" accession="ERX031939"> <IDENTIFIERS> <PRIMARY_ID>ERX031939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#54</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341975, constructed from sample accession ERS041899 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTTCTCC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041899" refname="Lys_258-sc-2011-07-14T16:08:13Z-1232764" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041899</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_258-sc-2011-07-14T16:08:13Z-1232764</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341975</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#55" center_name="SC" accession="ERX031940"> <IDENTIFIERS> <PRIMARY_ID>ERX031940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#55</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341976, constructed from sample accession ERS041900 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTCGCACC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041900" refname="Lys_259-sc-2011-07-14T16:08:13Z-1232765" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041900</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_259-sc-2011-07-14T16:08:13Z-1232765</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341976</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#56" center_name="SC" accession="ERX031941"> <IDENTIFIERS> <PRIMARY_ID>ERX031941</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#56</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341977, constructed from sample accession ERS041901 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTGCGTAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041901" refname="Lys_260-sc-2011-07-14T16:08:14Z-1232766" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041901</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_260-sc-2011-07-14T16:08:14Z-1232766</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341977</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#57" center_name="SC" accession="ERX031942"> <IDENTIFIERS> <PRIMARY_ID>ERX031942</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#57</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341978, constructed from sample accession ERS041902 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCTACGAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041902" refname="Lys_261-sc-2011-07-14T16:08:15Z-1232767" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041902</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_261-sc-2011-07-14T16:08:15Z-1232767</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341978</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#58" center_name="SC" accession="ERX031943"> <IDENTIFIERS> <PRIMARY_ID>ERX031943</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#58</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341979, constructed from sample accession ERS041903 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGACAGAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041903" refname="Lys_262-sc-2011-07-14T16:08:16Z-1232768" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041903</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_262-sc-2011-07-14T16:08:16Z-1232768</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341979</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#59" center_name="SC" accession="ERX031944"> <IDENTIFIERS> <PRIMARY_ID>ERX031944</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#59</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341980, constructed from sample accession ERS041904 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAGAACAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041904" refname="Lys_263-sc-2011-07-14T16:08:17Z-1232769" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041904</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_263-sc-2011-07-14T16:08:17Z-1232769</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341980</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#60" center_name="SC" accession="ERX031945"> <IDENTIFIERS> <PRIMARY_ID>ERX031945</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#60</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341981, constructed from sample accession ERS041905 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCATCCTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041905" refname="Lys_264-sc-2011-07-14T16:08:17Z-1232770" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041905</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_264-sc-2011-07-14T16:08:17Z-1232770</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341981</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#61" center_name="SC" accession="ERX031946"> <IDENTIFIERS> <PRIMARY_ID>ERX031946</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#61</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341982, constructed from sample accession ERS041906 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGCTGATA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041906" refname="Lys_265-sc-2011-07-14T16:08:18Z-1232771" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041906</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_265-sc-2011-07-14T16:08:18Z-1232771</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341982</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#62" center_name="SC" accession="ERX031947"> <IDENTIFIERS> <PRIMARY_ID>ERX031947</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#62</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341983, constructed from sample accession ERS041907 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TAGACGGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041907" refname="Lys_266-sc-2011-07-14T16:08:18Z-1232772" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041907</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_266-sc-2011-07-14T16:08:18Z-1232772</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341983</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#63" center_name="SC" accession="ERX031948"> <IDENTIFIERS> <PRIMARY_ID>ERX031948</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#63</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341984, constructed from sample accession ERS041908 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGTGAAGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041908" refname="Lys_267-sc-2011-07-14T16:08:19Z-1232773" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041908</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_267-sc-2011-07-14T16:08:19Z-1232773</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341984</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#64" center_name="SC" accession="ERX031949"> <IDENTIFIERS> <PRIMARY_ID>ERX031949</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#64</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341985, constructed from sample accession ERS041909 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TCTCTTCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041909" refname="Lys_268-sc-2011-07-14T16:08:19Z-1232774" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041909</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_268-sc-2011-07-14T16:08:19Z-1232774</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341985</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#65" center_name="SC" accession="ERX031950"> <IDENTIFIERS> <PRIMARY_ID>ERX031950</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#65</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341986, constructed from sample accession ERS041910 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TTGTTCCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041910" refname="Lys_270-sc-2011-07-14T16:08:20Z-1232775" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041910</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_270-sc-2011-07-14T16:08:20Z-1232775</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341986</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#66" center_name="SC" accession="ERX031951"> <IDENTIFIERS> <PRIMARY_ID>ERX031951</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#66</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341987, constructed from sample accession ERS041911 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGAAGCCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041911" refname="Lys_271-sc-2011-07-14T16:08:22Z-1232776" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041911</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_271-sc-2011-07-14T16:08:22Z-1232776</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341987</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#67" center_name="SC" accession="ERX031952"> <IDENTIFIERS> <PRIMARY_ID>ERX031952</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#67</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341988, constructed from sample accession ERS041912 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TACCACCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041912" refname="Lys_272-sc-2011-07-14T16:08:22Z-1232777" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041912</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_272-sc-2011-07-14T16:08:22Z-1232777</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341988</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#68" center_name="SC" accession="ERX031953"> <IDENTIFIERS> <PRIMARY_ID>ERX031953</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#68</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341989, constructed from sample accession ERS041913 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence TGCGTGAA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041913" refname="Lys_273-sc-2011-07-14T16:08:23Z-1232778" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041913</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_273-sc-2011-07-14T16:08:23Z-1232778</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341989</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#69" center_name="SC" accession="ERX031954"> <IDENTIFIERS> <PRIMARY_ID>ERX031954</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#69</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341990, constructed from sample accession ERS041914 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GGTGAGTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041914" refname="Lys_274-sc-2011-07-14T16:08:23Z-1232779" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041914</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_274-sc-2011-07-14T16:08:23Z-1232779</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341990</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#70" center_name="SC" accession="ERX031955"> <IDENTIFIERS> <PRIMARY_ID>ERX031955</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#70</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341991, constructed from sample accession ERS041915 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GATCTCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041915" refname="Lys_275-sc-2011-07-14T16:08:24Z-1232780" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041915</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_275-sc-2011-07-14T16:08:24Z-1232780</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341991</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#71" center_name="SC" accession="ERX031956"> <IDENTIFIERS> <PRIMARY_ID>ERX031956</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#71</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341992, constructed from sample accession ERS041916 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTGTCCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041916" refname="Lys_276-sc-2011-07-14T16:08:24Z-1232781" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041916</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_276-sc-2011-07-14T16:08:24Z-1232781</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341992</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#72" center_name="SC" accession="ERX031957"> <IDENTIFIERS> <PRIMARY_ID>ERX031957</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#72</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341993, constructed from sample accession ERS041917 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GACGGATT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041917" refname="Lys_277-sc-2011-07-14T16:08:25Z-1232782" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041917</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_277-sc-2011-07-14T16:08:25Z-1232782</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341993</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#73" center_name="SC" accession="ERX031958"> <IDENTIFIERS> <PRIMARY_ID>ERX031958</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#73</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341994, constructed from sample accession ERS041918 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCAACATT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041918" refname="Lys_278-sc-2011-07-14T16:08:26Z-1232783" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041918</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_278-sc-2011-07-14T16:08:26Z-1232783</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341994</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#74" center_name="SC" accession="ERX031959"> <IDENTIFIERS> <PRIMARY_ID>ERX031959</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#74</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341995, constructed from sample accession ERS041919 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GGTCGTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041919" refname="Lys_279-sc-2011-07-14T16:08:27Z-1232784" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041919</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_279-sc-2011-07-14T16:08:27Z-1232784</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341995</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#75" center_name="SC" accession="ERX031960"> <IDENTIFIERS> <PRIMARY_ID>ERX031960</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#75</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341996, constructed from sample accession ERS041920 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GAATCTGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041920" refname="Lys_280-sc-2011-07-14T16:08:28Z-1232785" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041920</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_280-sc-2011-07-14T16:08:28Z-1232785</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341996</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#76" center_name="SC" accession="ERX031961"> <IDENTIFIERS> <PRIMARY_ID>ERX031961</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#76</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341997, constructed from sample accession ERS041921 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTACATCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041921" refname="Lys_281-sc-2011-07-14T16:08:28Z-1232786" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041921</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_281-sc-2011-07-14T16:08:28Z-1232786</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341997</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#77" center_name="SC" accession="ERX031962"> <IDENTIFIERS> <PRIMARY_ID>ERX031962</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#77</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341998, constructed from sample accession ERS041922 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GAGGTGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041922" refname="Lys_282-sc-2011-07-14T16:08:30Z-1232787" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041922</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_282-sc-2011-07-14T16:08:30Z-1232787</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341998</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#78" center_name="SC" accession="ERX031963"> <IDENTIFIERS> <PRIMARY_ID>ERX031963</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#78</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3341999, constructed from sample accession ERS041923 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCATGGCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041923" refname="Lys_283-sc-2011-07-14T16:08:30Z-1232788" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041923</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_283-sc-2011-07-14T16:08:30Z-1232788</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3341999</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#79" center_name="SC" accession="ERX031964"> <IDENTIFIERS> <PRIMARY_ID>ERX031964</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#79</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342000, constructed from sample accession ERS041924 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTTAGCCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041924" refname="Lys_284-sc-2011-07-14T16:08:31Z-1232789" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041924</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_284-sc-2011-07-14T16:08:31Z-1232789</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342000</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#80" center_name="SC" accession="ERX031965"> <IDENTIFIERS> <PRIMARY_ID>ERX031965</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#80</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342001, constructed from sample accession ERS041925 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTCGCTAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041925" refname="Lys_286-sc-2011-07-14T16:08:31Z-1232790" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041925</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_286-sc-2011-07-14T16:08:31Z-1232790</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342001</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#81" center_name="SC" accession="ERX031966"> <IDENTIFIERS> <PRIMARY_ID>ERX031966</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#81</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342002, constructed from sample accession ERS041926 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GGAATGAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041926" refname="Lys_287-sc-2011-07-14T16:08:34Z-1232791" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041926</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_287-sc-2011-07-14T16:08:34Z-1232791</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342002</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#82" center_name="SC" accession="ERX031967"> <IDENTIFIERS> <PRIMARY_ID>ERX031967</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#82</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342003, constructed from sample accession ERS041927 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GAGCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041927" refname="Lys_288-sc-2011-07-14T16:08:34Z-1232792" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041927</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_288-sc-2011-07-14T16:08:34Z-1232792</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342003</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#83" center_name="SC" accession="ERX031968"> <IDENTIFIERS> <PRIMARY_ID>ERX031968</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#83</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342004, constructed from sample accession ERS041928 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCTCCTTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041928" refname="Lys_289-sc-2011-07-14T16:08:35Z-1232793" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041928</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_289-sc-2011-07-14T16:08:35Z-1232793</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342004</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#84" center_name="SC" accession="ERX031969"> <IDENTIFIERS> <PRIMARY_ID>ERX031969</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#84</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342005, constructed from sample accession ERS041929 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTAAGGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041929" refname="Lys_290-sc-2011-07-14T16:08:35Z-1232794" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041929</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_290-sc-2011-07-14T16:08:35Z-1232794</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342005</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#85" center_name="SC" accession="ERX031970"> <IDENTIFIERS> <PRIMARY_ID>ERX031970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#85</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342006, constructed from sample accession ERS041930 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GAGGATGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041930" refname="Lys_291-sc-2011-07-14T16:08:37Z-1232795" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041930</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_291-sc-2011-07-14T16:08:37Z-1232795</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342006</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#86" center_name="SC" accession="ERX031971"> <IDENTIFIERS> <PRIMARY_ID>ERX031971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#86</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342007, constructed from sample accession ERS041931 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTTGTCGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041931" refname="Lys_292-sc-2011-07-14T16:08:37Z-1232796" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041931</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_292-sc-2011-07-14T16:08:37Z-1232796</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342007</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#87" center_name="SC" accession="ERX031972"> <IDENTIFIERS> <PRIMARY_ID>ERX031972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#87</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342008, constructed from sample accession ERS041932 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GGATTAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041932" refname="Lys_293-sc-2011-07-14T16:08:38Z-1232797" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041932</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_293-sc-2011-07-14T16:08:38Z-1232797</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342008</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#88" center_name="SC" accession="ERX031973"> <IDENTIFIERS> <PRIMARY_ID>ERX031973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#88</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342009, constructed from sample accession ERS041933 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GATAGAGG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041933" refname="Lys_295-sc-2011-07-14T16:08:40Z-1232798" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041933</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_295-sc-2011-07-14T16:08:40Z-1232798</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342009</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#89" center_name="SC" accession="ERX031974"> <IDENTIFIERS> <PRIMARY_ID>ERX031974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#89</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342010, constructed from sample accession ERS041934 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GTGTGTCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041934" refname="Lys_296-sc-2011-07-14T16:08:41Z-1232799" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041934</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_296-sc-2011-07-14T16:08:41Z-1232799</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342010</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#90" center_name="SC" accession="ERX031975"> <IDENTIFIERS> <PRIMARY_ID>ERX031975</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#90</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342011, constructed from sample accession ERS041935 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCAATCCG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041935" refname="Lys_297-sc-2011-07-14T16:08:41Z-1232800" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041935</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_297-sc-2011-07-14T16:08:41Z-1232800</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342011</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#91" center_name="SC" accession="ERX031976"> <IDENTIFIERS> <PRIMARY_ID>ERX031976</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#91</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342012, constructed from sample accession ERS041936 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GACCTTAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041936" refname="Lys_298-sc-2011-07-14T16:08:42Z-1232801" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041936</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_298-sc-2011-07-14T16:08:42Z-1232801</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342012</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#92" center_name="SC" accession="ERX031977"> <IDENTIFIERS> <PRIMARY_ID>ERX031977</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#92</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342013, constructed from sample accession ERS041937 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCCTGTTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041937" refname="Lys_300-sc-2011-07-14T16:08:43Z-1232802" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041937</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_300-sc-2011-07-14T16:08:43Z-1232802</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342013</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#93" center_name="SC" accession="ERX031978"> <IDENTIFIERS> <PRIMARY_ID>ERX031978</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#93</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342014, constructed from sample accession ERS041938 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCACTGTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041938" refname="Lys_301-sc-2011-07-14T16:08:43Z-1232803" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041938</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_301-sc-2011-07-14T16:08:43Z-1232803</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342014</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#94" center_name="SC" accession="ERX031979"> <IDENTIFIERS> <PRIMARY_ID>ERX031979</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#94</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342015, constructed from sample accession ERS041939 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GCTAACTC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041939" refname="Lys_304-sc-2011-07-14T16:08:44Z-1232804" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041939</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_304-sc-2011-07-14T16:08:44Z-1232804</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342015</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_6738_6#95" center_name="SC" accession="ERX031980"> <IDENTIFIERS> <PRIMARY_ID>ERX031980</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_6738_6#95</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000780" refname="Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000780</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Quantifying_Linkage_and_Selection_in_Artificially_Outbred_Populations-sc-2011-07-14T15:04:39Z-1899</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 3342016, constructed from sample accession ERS041940 for study accession ERP000780. This is part of an Illumina multiplexed sequencing run (6738_6). This submission includes reads tagged with the sequence GATTCATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS041940" refname="Lys_305-sc-2011-07-14T16:08:45Z-1232805" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS041940</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Lys_305-sc-2011-07-14T16:08:45Z-1232805</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>3342016</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="223" NOMINAL_SDEV="66"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>208</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>