<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY accession="ERP105064" alias="ena-STUDY-UNIVERSITY OF LIVERPOOL-03-11-2017-14:40:52:147-2" center_name="UNIVERSITY OF LIVERPOOL">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP105064</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJEB23320</EXTERNAL_ID>
      <SUBMITTER_ID namespace="UNIVERSITY OF LIVERPOOL">ena-STUDY-UNIVERSITY OF LIVERPOOL-03-11-2017-14:40:52:147-2</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Diversity analysis of SNPs and methylation across wheat varieties</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>We survey genotype and DNA methylation across the core Watkins bread wheat landrace collection. We observe high transposable element variability and expansion, most frequently in retrotransposons, alongside high epigenomic diversity; while there is an association between methylation and genotype, methylation is a standalone source of variation between closely related accessions. Both methylation and genotype are influenced by geographic origin.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>Epigenomic variation across a polyploid wheat diversity collection</CENTER_PROJECT_NAME>
      <STUDY_DESCRIPTION>We survey genotype and DNA methylation across the core Watkins bread wheat landrace collection. We observe high transposable element variability and expansion, most frequently in retrotransposons, alongside high epigenomic diversity; while there is an association between methylation and genotype, methylation is a standalone source of variation between closely related accessions. Both methylation and genotype are influenced by geographic origin.</STUDY_DESCRIPTION>
    </DESCRIPTOR>
    <STUDY_ATTRIBUTES>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2018-07-01</VALUE>
      </STUDY_ATTRIBUTE>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2017-11-03</VALUE>
      </STUDY_ATTRIBUTE>
    </STUDY_ATTRIBUTES>
  </STUDY>
</STUDY_SET>
