ERX085473 SC_EXP_7463_1#1 <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343897, constructed from sample accession ERS088978 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence TAAGGCGATAGATCGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088978" refname="MRSA9-sc-1341017" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088978</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA9-sc-1341017</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343897</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#14" center_name="SC" accession="ERX085474"> <IDENTIFIERS> <PRIMARY_ID>ERX085474</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343898, constructed from sample accession ERS088979 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence CGTACTAGCTCTCTAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088979" refname="MRSA10-sc-1341018" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088979</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA10-sc-1341018</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343898</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#27" center_name="SC" accession="ERX085475"> <IDENTIFIERS> <PRIMARY_ID>ERX085475</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#27</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343899, constructed from sample accession ERS088980 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence AGGCAGAATATCCTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088980" refname="MRSA11-sc-1341019" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088980</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA11-sc-1341019</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343899</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#40" center_name="SC" accession="ERX085476"> <IDENTIFIERS> <PRIMARY_ID>ERX085476</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#40</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343900, constructed from sample accession ERS088981 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence TCCTGAGCAGAGTAGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088981" refname="AMS16-sc-2012-01-30T12:55:43Z-1341020" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088981</PRIMARY_ID> <SUBMITTER_ID namespace="SC">AMS16-sc-2012-01-30T12:55:43Z-1341020</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343900</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#53" center_name="SC" accession="ERX085477"> <IDENTIFIERS> <PRIMARY_ID>ERX085477</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#53</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343901, constructed from sample accession ERS088982 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088982" refname="MRSA13-sc-1341021" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088982</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA13-sc-1341021</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343901</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#66" center_name="SC" accession="ERX085478"> <IDENTIFIERS> <PRIMARY_ID>ERX085478</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#66</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343902, constructed from sample accession ERS088983 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence TAGGCATGACTGCATA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088983" refname="MRSA14-sc-1341022" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088983</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA14-sc-1341022</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343902</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#79" center_name="SC" accession="ERX085479"> <IDENTIFIERS> <PRIMARY_ID>ERX085479</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#79</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343903, constructed from sample accession ERS088984 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence CTCTCTACAAGGAGTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088984" refname="MRSA15-sc-1341023" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088984</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA15-sc-1341023</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343903</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7463_1#92" center_name="SC" accession="ERX085480"> <IDENTIFIERS> <PRIMARY_ID>ERX085480</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7463_1#92</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4343904, constructed from sample accession ERS088985 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7463_1). This submission includes reads tagged with the sequence CAGAGAGGCTAAGCCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088985" refname="MRSA16-sc-1341024" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088985</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA16-sc-1341024</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4343904</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="315" NOMINAL_SDEV="132"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#1" center_name="SC" accession="ERX085481"> <IDENTIFIERS> <PRIMARY_ID>ERX085481</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344788, constructed from sample accession ERS088986 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence TAAGGCGATAGATCGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088986" refname="MRSA17-sc-1341025" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088986</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA17-sc-1341025</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344788</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#14" center_name="SC" accession="ERX085482"> <IDENTIFIERS> <PRIMARY_ID>ERX085482</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344789, constructed from sample accession ERS088987 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence CGTACTAGCTCTCTAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088987" refname="MRSA18-sc-1341026" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088987</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA18-sc-1341026</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344789</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#27" center_name="SC" accession="ERX085483"> <IDENTIFIERS> <PRIMARY_ID>ERX085483</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#27</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344790, constructed from sample accession ERS088988 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence AGGCAGAATATCCTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088988" refname="MRSA19-sc-1341027" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088988</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA19-sc-1341027</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344790</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#40" center_name="SC" accession="ERX085484"> <IDENTIFIERS> <PRIMARY_ID>ERX085484</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#40</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344791, constructed from sample accession ERS088989 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence TCCTGAGCAGAGTAGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088989" refname="MRSA20-sc-1341028" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088989</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA20-sc-1341028</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344791</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#53" center_name="SC" accession="ERX085485"> <IDENTIFIERS> <PRIMARY_ID>ERX085485</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#53</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344792, constructed from sample accession ERS088990 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088990" refname="MRSA21-sc-1341029" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088990</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA21-sc-1341029</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344792</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#66" center_name="SC" accession="ERX085486"> <IDENTIFIERS> <PRIMARY_ID>ERX085486</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#66</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344793, constructed from sample accession ERS088991 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence TAGGCATGACTGCATA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088991" refname="MRSA22-sc-1341030" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088991</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA22-sc-1341030</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344793</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#79" center_name="SC" accession="ERX085487"> <IDENTIFIERS> <PRIMARY_ID>ERX085487</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#79</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344794, constructed from sample accession ERS088992 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence CTCTCTACAAGGAGTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088992" refname="MRSA23-sc-1341031" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088992</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA23-sc-1341031</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344794</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7473_1#92" center_name="SC" accession="ERX085488"> <IDENTIFIERS> <PRIMARY_ID>ERX085488</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7473_1#92</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4344795, constructed from sample accession ERS088993 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7473_1). This submission includes reads tagged with the sequence CAGAGAGGCTAAGCCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088993" refname="H2H_25-sc-2012-01-30T12:55:53Z-1341032" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088993</PRIMARY_ID> <SUBMITTER_ID namespace="SC">H2H_25-sc-2012-01-30T12:55:53Z-1341032</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4344795</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="358" NOMINAL_SDEV="148"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#1" center_name="SC" accession="ERX085489"> <IDENTIFIERS> <PRIMARY_ID>ERX085489</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#1</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352740, constructed from sample accession ERS088970 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence TAAGGCGATAGATCGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088970" refname="MRSA1-sc-1341009" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088970</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA1-sc-1341009</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352740</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#14" center_name="SC" accession="ERX085490"> <IDENTIFIERS> <PRIMARY_ID>ERX085490</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#14</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352741, constructed from sample accession ERS088971 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence CGTACTAGCTCTCTAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088971" refname="MRSA2-sc-1341010" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088971</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA2-sc-1341010</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352741</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#27" center_name="SC" accession="ERX085491"> <IDENTIFIERS> <PRIMARY_ID>ERX085491</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#27</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352742, constructed from sample accession ERS088972 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence AGGCAGAATATCCTCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088972" refname="MRSA3-sc-1341011" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088972</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA3-sc-1341011</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352742</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#40" center_name="SC" accession="ERX085492"> <IDENTIFIERS> <PRIMARY_ID>ERX085492</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#40</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352743, constructed from sample accession ERS088973 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence TCCTGAGCAGAGTAGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088973" refname="MRSA4-sc-1341012" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088973</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA4-sc-1341012</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352743</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#53" center_name="SC" accession="ERX085493"> <IDENTIFIERS> <PRIMARY_ID>ERX085493</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#53</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352744, constructed from sample accession ERS088974 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088974" refname="MRSA5-sc-1341013" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088974</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA5-sc-1341013</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352744</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#66" center_name="SC" accession="ERX085494"> <IDENTIFIERS> <PRIMARY_ID>ERX085494</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#66</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352745, constructed from sample accession ERS088975 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence TAGGCATGACTGCATA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088975" refname="MRSA6-sc-1341014" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088975</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA6-sc-1341014</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352745</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#79" center_name="SC" accession="ERX085495"> <IDENTIFIERS> <PRIMARY_ID>ERX085495</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#79</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352746, constructed from sample accession ERS088976 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence CTCTCTACAAGGAGTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088976" refname="MRSA7-sc-1341015" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088976</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA7-sc-1341015</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352746</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_7499_1#92" center_name="SC" accession="ERX085496"> <IDENTIFIERS> <PRIMARY_ID>ERX085496</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_7499_1#92</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP001177" refname="MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP001177</PRIMARY_ID> <SUBMITTER_ID namespace="SC">MRSA_library_sequencing-sc-2012-01-30T12:38:06Z-2097</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 4352747, constructed from sample accession ERS088977 for study accession ERP001177. This is part of an Illumina multiplexed sequencing run (7499_1). This submission includes reads tagged with the sequence CAGAGAGGCTAAGCCT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS088977" refname="AMS12-sc-2012-01-30T12:55:41Z-1341016" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS088977</PRIMARY_ID> <SUBMITTER_ID namespace="SC">AMS12-sc-2012-01-30T12:55:41Z-1341016</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4352747</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="343" NOMINAL_SDEV="142"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>qPCR only</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>318</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>