ERX088888 SC_EXP_2730_2#1 <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60296, constructed from sample accession ERS004203 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence ATCACG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004203" refname="Clostridium_difficile_strain_BI_10-sc-2010-05-07-2797" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004203</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_BI_10-sc-2010-05-07-2797</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60296</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_2#2" center_name="SC" accession="ERX088889"> <IDENTIFIERS> <PRIMARY_ID>ERX088889</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_2#2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60298, constructed from sample accession ERS004200 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence CGATGT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004200" refname="Clostridium_difficile_strain_196-sc-2010-05-07-2798" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004200</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_196-sc-2010-05-07-2798</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60298</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_2#3" center_name="SC" accession="ERX088890"> <IDENTIFIERS> <PRIMARY_ID>ERX088890</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_2#3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60300, constructed from sample accession ERS004201 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence TTAGGC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004201" refname="Clostridium_difficile_strain_2004013-sc-2010-05-07-2799" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004201</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2004013-sc-2010-05-07-2799</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60300</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_2#4" center_name="SC" accession="ERX088891"> <IDENTIFIERS> <PRIMARY_ID>ERX088891</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_2#4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60302, constructed from sample accession ERS004207 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence TGACCA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004207" refname="Clostridium_difficile_strain_2006439-sc-2010-05-07-2800" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004207</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2006439-sc-2010-05-07-2800</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60302</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_2#5" center_name="SC" accession="ERX088892"> <IDENTIFIERS> <PRIMARY_ID>ERX088892</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_2#5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60304, constructed from sample accession ERS004205 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence ACAGTG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004205" refname="Clostridium_difficile_strain_2007140-sc-2010-05-07-2801" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004205</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2007140-sc-2010-05-07-2801</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60304</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_2#6" center_name="SC" accession="ERX088893"> <IDENTIFIERS> <PRIMARY_ID>ERX088893</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_2#6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60306, constructed from sample accession ERS004204 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_2). This submission includes reads tagged with the sequence GCCAAT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004204" refname="Clostridium_difficile_strain_2007825-sc-2010-05-07-2802" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004204</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2007825-sc-2010-05-07-2802</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60306</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="49"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#7" center_name="SC" accession="ERX088894"> <IDENTIFIERS> <PRIMARY_ID>ERX088894</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60308, constructed from sample accession ERS004206 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence CAGATC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004206" refname="Clostridium_difficile_strain_2007837-sc-2010-05-07-2803" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004206</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2007837-sc-2010-05-07-2803</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60308</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#8" center_name="SC" accession="ERX088895"> <IDENTIFIERS> <PRIMARY_ID>ERX088895</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#8</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60310, constructed from sample accession ERS004208 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence ACTTGA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004208" refname="Clostridium_difficile_strain_2004102-sc-2010-05-07-2804" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004208</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2004102-sc-2010-05-07-2804</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60310</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#9" center_name="SC" accession="ERX088896"> <IDENTIFIERS> <PRIMARY_ID>ERX088896</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#9</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60312, constructed from sample accession ERS004209 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence GATCAG.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004209" refname="Clostridium_difficile_strain_2004118-sc-2010-05-07-2805" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004209</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2004118-sc-2010-05-07-2805</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60312</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#10" center_name="SC" accession="ERX088897"> <IDENTIFIERS> <PRIMARY_ID>ERX088897</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#10</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60314, constructed from sample accession ERS004210 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence TAGCTT.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004210" refname="Clostridium_difficile_strain_2004163-sc-2010-05-07-2806" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004210</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2004163-sc-2010-05-07-2806</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60314</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#11" center_name="SC" accession="ERX088898"> <IDENTIFIERS> <PRIMARY_ID>ERX088898</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#11</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60316, constructed from sample accession ERS004212 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence GGCTAC.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004212" refname="Clostridium_difficile_strain_2007833-sc-2010-05-07-2808" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004212</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2007833-sc-2010-05-07-2808</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60316</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="SC_EXP_2730_3#12" center_name="SC" accession="ERX088899"> <IDENTIFIERS> <PRIMARY_ID>ERX088899</PRIMARY_ID> <SUBMITTER_ID namespace="SC">SC_EXP_2730_3#12</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP000093" refname="Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERP000093</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Microevolution of hypervirulent clade and ribotype 027 C. difficile isolates</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Illumina sequencing of library 60318, constructed from sample accession ERS004214 for study accession ERP000093. This is part of an Illumina multiplexed sequencing run (2730_3). This submission includes reads tagged with the sequence CTTGTA.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="ERS004214" refname="Clostridium_difficile_strain_2007218-sc-2010-05-07-2810" refcenter="SC"> <IDENTIFIERS> <PRIMARY_ID>ERS004214</PRIMARY_ID> <SUBMITTER_ID namespace="SC">Clostridium_difficile_strain_2007218-sc-2010-05-07-2810</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>60318</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED NOMINAL_LENGTH="179" NOMINAL_SDEV="50"/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>61</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <RELATIVE_ORDER follows_read_index="0"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>