ERS2572323 SAMEA4752222 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752222 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R01_SG08 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 1 sample name E-MTAB-6933:R01_SG08 scientific_name Homo sapiens ERS2572324 SAMEA4752223 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752223 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R01_SG10A broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 2 sample name E-MTAB-6933:R01_SG10A scientific_name Homo sapiens ERS2572325 SAMEA4752224 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752224 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R01_SG15 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 3 sample name E-MTAB-6933:R01_SG15 scientific_name Homo sapiens ERS2572326 SAMEA4752225 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752225 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R02_SG09 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 4 sample name E-MTAB-6933:R02_SG09 scientific_name Homo sapiens ERS2572327 SAMEA4752226 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752226 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R02_SG11 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 5 sample name E-MTAB-6933:R02_SG11 scientific_name Homo sapiens ERS2572328 SAMEA4752227 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752227 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R02_SG17 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 6 sample name E-MTAB-6933:R02_SG17 scientific_name Homo sapiens ERS2572329 SAMEA4752228 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752228 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R02_SG20 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 7 sample name E-MTAB-6933:R02_SG20 scientific_name Homo sapiens ERS2572330 SAMEA4752229 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752229 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R02_SG23 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 8 sample name E-MTAB-6933:R02_SG23 scientific_name Homo sapiens ERS2572331 SAMEA4752230 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752230 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R03_SG12 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 9 sample name E-MTAB-6933:R03_SG12 scientific_name Homo sapiens ERS2572332 SAMEA4752231 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752231 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R03_SG13 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 10 sample name E-MTAB-6933:R03_SG13 scientific_name Homo sapiens ERS2572333 SAMEA4752232 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:35Z External Id SAMEA4752232 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:35Z INSDC status public Submitter Id E-MTAB-6933:R03_SG16 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 11 sample name E-MTAB-6933:R03_SG16 scientific_name Homo sapiens ERS2572334 SAMEA4752233 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752233 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R03_SG18 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 12 sample name E-MTAB-6933:R03_SG18 scientific_name Homo sapiens ERS2572335 SAMEA4752234 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752234 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R03_SG19 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 13 sample name E-MTAB-6933:R03_SG19 scientific_name Homo sapiens ERS2572336 SAMEA4752235 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752235 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R03_SG22 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 14 sample name E-MTAB-6933:R03_SG22 scientific_name Homo sapiens ERS2572337 SAMEA4752236 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752236 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R03_SG25 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 15 sample name E-MTAB-6933:R03_SG25 scientific_name Homo sapiens ERS2572338 SAMEA4752237 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752237 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R03_SGP1 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 16 sample name E-MTAB-6933:R03_SGP1 scientific_name Homo sapiens ERS2572339 SAMEA4752238 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752238 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R04_SG07A broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 17 sample name E-MTAB-6933:R04_SG07A scientific_name Homo sapiens ERS2572340 SAMEA4752239 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752239 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R04_SG24 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 18 sample name E-MTAB-6933:R04_SG24 scientific_name Homo sapiens ERS2572341 SAMEA4752240 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752240 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R04_SG26 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 19 sample name E-MTAB-6933:R04_SG26 scientific_name Homo sapiens ERS2572342 SAMEA4752241 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752241 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R04_SG27 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 20 sample name E-MTAB-6933:R04_SG27 scientific_name Homo sapiens ERS2572343 SAMEA4752242 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752242 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R04_SG28 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 21 sample name E-MTAB-6933:R04_SG28 scientific_name Homo sapiens ERS2572344 SAMEA4752243 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752243 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R05_SG01 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 22 sample name E-MTAB-6933:R05_SG01 scientific_name Homo sapiens ERS2572345 SAMEA4752244 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752244 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R07_SG30 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 23 sample name E-MTAB-6933:R07_SG30 scientific_name Homo sapiens ERS2572346 SAMEA4752245 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752245 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R08_SG1614_ddPCR broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 24 sample name E-MTAB-6933:R08_SG1614_ddPCR scientific_name Homo sapiens ERS2572347 SAMEA4752246 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752246 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R08_SG1614_regPCR broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 24 sample name E-MTAB-6933:R08_SG1614_regPCR scientific_name Homo sapiens ERS2572348 SAMEA4752247 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752247 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R09_SG1603 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 25 sample name E-MTAB-6933:R09_SG1603 scientific_name Homo sapiens ERS2572349 SAMEA4752248 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752248 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R09_SG1608 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 26 sample name E-MTAB-6933:R09_SG1608 scientific_name Homo sapiens ERS2572350 SAMEA4752249 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752249 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R09_SG1609 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 27 sample name E-MTAB-6933:R09_SG1609 scientific_name Homo sapiens ERS2572351 SAMEA4752250 9606 Homo sapiens Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator. ENA-FIRST-PUBLIC 2019-04-04T04:03:44Z ENA-LAST-UPDATE 2018-06-21T13:16:36Z External Id SAMEA4752250 INSDC center name Universite Cote d'Azur, Inserm, CNRS INSDC first public 2019-04-04T04:03:44Z INSDC last update 2018-06-21T13:16:36Z INSDC status public Submitter Id E-MTAB-6933:R09_SG1610 broker name ArrayExpress cell line HeLa-S3 common name human genotype L1.3 retrotransposon replicate 28 sample name E-MTAB-6933:R09_SG1610 scientific_name Homo sapiens